mRNA_P-lacustris_contig1055.514.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1055.514.1 vs. uniprot
Match: A0A6H5LDR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDR5_9PHAE) HSP 1 Score: 193 bits (491), Expect = 7.360e-47 Identity = 135/205 (65.85%), Postives = 147/205 (71.71%), Query Frame = 1
Query: 907 GSGGAFLGSSLWAESDLEWRDAPRAGSDALYELNMQLAAYAKDAQWEMAIMLLRQARALSMKRSSSGSSEGEKEERGDPSARDGRNTQEXXXXXXXXXQSGRRTNGVNPSNDVSPSVSSSSSFSFSAEEEWPVAVPVVVPNVVSYNNVITACANAKKQKRAEGVFREMTKERGIRPNXXXXXXXXXXXAKRGNWEDSVNYLEHMR 1521
G AF G SLWA+SD EWRDAPRA SDAL+ELNMQLAAYAKDAQWEMAIMLLRQAR LS + S XXXXXXX + +R GV+P + + SVS + + EEEW +AVP V PNVVSYNNVITACANAKKQKRAEG+FREMTKERGIR XXXXXXXXXXXAKRGNWEDSVNYLE MR
Sbjct: 155 GGAAAFTGPSLWADSDPEWRDAPRADSDALFELNMQLAAYAKDAQWEMAIMLLRQARVLSRR----SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNDAAKRRYGVHPGGNDNLSVSVPYTSAAEKEEEWRLAVPAVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRXXXXXXXXXXXXXAKRGNWEDSVNYLEQMR 355
BLAST of mRNA_P-lacustris_contig1055.514.1 vs. uniprot
Match: D7FHW4_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW4_ECTSI) HSP 1 Score: 186 bits (471), Expect = 2.830e-45 Identity = 99/140 (70.71%), Postives = 103/140 (73.57%), Query Frame = 1
Query: 2626 VDADKIEEAIQLFNKLQARRSCSVNIHSYTPLVEALTRELRWQEAIMLFQEMEDRKITPTVQCYXXXXXXXXXXXXXXXXXXXLDEMRKKRMRFYDIGILDELFKRLLAGLSLLRGRAPPRGGATGSADPRRAGSRTTVG 3045
VDAD+IEEAIQLFNKLQARR+CSV IHSYTPLV+ALTRELRWQEAIMLFQEMEDRKI PTVQCY LD+MRKKRMRFYDIGILDELFKRLLAGLSLLRGR P G PR SR G
Sbjct: 516 VDADQIEEAIQLFNKLQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRACERSGQYDVALRLLDDMRKKRMRFYDIGILDELFKRLLAGLSLLRGRGGPGGAKGRGGAPRIGSSRAPAG 655 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1055.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1055.514.1 >prot_P-lacustris_contig1055.514.1 ID=prot_P-lacustris_contig1055.514.1|Name=mRNA_P-lacustris_contig1055.514.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=1020bp MQRMGRRQTRYRGAAFSMTRVLGAMAAGGLDTSLTAVVLVTHTAGTAVTTback to top mRNA from alignment at P-lacustris_contig1055:36831..55607+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1055.514.1 ID=mRNA_P-lacustris_contig1055.514.1|Name=mRNA_P-lacustris_contig1055.514.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=18777bp|location=Sequence derived from alignment at P-lacustris_contig1055:36831..55607+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1055:36831..55607+ >mRNA_P-lacustris_contig1055.514.1 ID=mRNA_P-lacustris_contig1055.514.1|Name=mRNA_P-lacustris_contig1055.514.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=6120bp|location=Sequence derived from alignment at P-lacustris_contig1055:36831..55607+ (Pleurocladia lacustris SAG_25_93)back to top |