prot_P-lacustris_contig1046.454.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-lacustris_contig1046.454.1
Unique Name	prot_P-lacustris_contig1046.454.1
Type	polypeptide
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length	204

Homology

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: D7FJC7_ECTSI (Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC7_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 1.190e-131
Identity = 193/203 (95.07%), Postives = 193/203 (95.07%), Query Frame = 0

Query:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 203
            MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK        ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEAR YAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPR EQKSGCC
Sbjct:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 195

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A835Z7I1_9STRA (Rab5, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I1_9STRA)

HSP 1 Score: 326 bits (835), Expect = 1.070e-111
Identity = 167/199 (83.92%), Postives = 178/199 (89.45%), Query Frame = 0

Query:    5 RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 203
            RVCHFKLVLLGDTAVGKSCLVVRFVR+EFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK        +SFNGAKSWVKELQRRGDPNV+IALAGNKADLE RRQV  EEA  YAE+NG+IHMETSAKSA NVKSIFVEIA++LPKA  QPEREAFPIM PR ++K+G C
Sbjct:    3 RVCHFKLVLLGDTAVGKSCLVVRFVRNEFFEFQEPTIGAAFLTQTVGLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------DSFNGAKSWVKELQRRGDPNVVIALAGNKADLEGRRQVHFEEAHAYAEENGIIHMETSAKSALNVKSIFVEIAKRLPKAGAQPEREAFPIMPPRRDKKAGGC 193

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: F0YJN1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJN1_AURAN)

HSP 1 Score: 320 bits (821), Expect = 1.500e-109
Identity = 158/203 (77.83%), Postives = 181/203 (89.16%), Query Frame = 0

Query:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 203
            M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L++ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TNK        ESFNGAKSWVKELQRRGDPNVIIALAGNKADL+++R+V+SEEA+QY+E+NG++HMETSAK+A +VK +F EIA+KLPK   QPER+AFPI+ P+  +   CC
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQSVNLENATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNK--------ESFNGAKSWVKELQRRGDPNVIIALAGNKADLQNKRRVESEEAKQYSEENGILHMETSAKNATHVKDLFQEIARKLPKTPPQPERDAFPIIPPKHNENKVCC 195

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A6V1MPB5_HETAK (Hypothetical protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1MPB5_HETAK)

HSP 1 Score: 315 bits (808), Expect = 1.380e-107
Identity = 163/203 (80.30%), Postives = 174/203 (85.71%), Query Frame = 0

Query:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 203
            M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQ V L +ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK        +SFNGAKSWVKELQRRGDPNV+IALAGNK DLE RRQV  EEA  YA +NG+IHMETSAKSA NV+ IF++IA+KLPK   Q ERE FPIM P+ E K GCC
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQTVSLPEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------DSFNGAKSWVKELQRRGDPNVVIALAGNKCDLEPRRQVPFEEAAAYAAENGIIHMETSAKSAHNVQQIFLDIAKKLPKNPPQVEREVFPIMPPKRESK-GCC 194

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A7S1ZIQ9_TRICV (Hypothetical protein n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A7S1ZIQ9_TRICV)

HSP 1 Score: 313 bits (801), Expect = 6.910e-106
Identity = 156/200 (78.00%), Postives = 175/200 (87.50%), Query Frame = 0

Query:    3 SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGC 202
            S RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LD+ATVKFEIWDTAGQERYRSLAPMYYRGAAAAI+VYD+TN         +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA  YAE+NG++H+ETSAK+A NVK++FVEIA+KLPK   QPEREAFPI+ P+ E +S C
Sbjct:   45 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNP--------DSFAGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEANAYAEENGILHLETSAKNASNVKALFVEIAKKLPKTPPQPEREAFPIVTPKQENRSCC 236

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A7S2RYM3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYM3_9STRA)

HSP 1 Score: 310 bits (794), Expect = 2.010e-105
Identity = 155/204 (75.98%), Postives = 178/204 (87.25%), Query Frame = 0

Query:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQ-KSGCC 203
            M++ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TNK        +SFNGA+SWVKELQ+RGDPNV+IALAGNK+DLEH+R+V++EEA  YA +NG++HMETSAKSA NVKS+FVEIA+KLPK   +  REAFPI+ P+  Q +  CC
Sbjct:    1 MAANRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNK--------DSFNGARSWVKELQKRGDPNVVIALAGNKSDLEHKRKVETEEAEAYALENGILHMETSAKSATNVKSLFVEIARKLPKNPPETPREAFPIIPPKTSQSRRQCC 196

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: B8BUG2_THAPS (Canine-like rab-type small G protein n=2 Tax=Thalassiosira TaxID=35127 RepID=B8BUG2_THAPS)

HSP 1 Score: 309 bits (792), Expect = 3.660e-105
Identity = 156/201 (77.61%), Postives = 175/201 (87.06%), Query Frame = 0

Query:    3 SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 203
            S RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TN         +SF GAKSWVKELQRRGD +V+IA+AGNKADLE RRQV  EEA  YAE+NG++HMETSAK+A NVK++FVEIA++LPK+T QP+REAFPIM P+ ++   CC
Sbjct:    2 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNP--------DSFAGAKSWVKELQRRGDQDVVIAMAGNKADLEARRQVDFEEANAYAEENGILHMETSAKNANNVKALFVEIARRLPKSTQQPDREAFPIM-PQKQESRNCC 193

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: T0Q598_SAPDV (Ras-like protein Rab-5A n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q598_SAPDV)

HSP 1 Score: 309 bits (791), Expect = 5.760e-105
Identity = 160/204 (78.43%), Postives = 173/204 (84.80%), Query Frame = 0

Query:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 203
            M+S + CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD  TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK        +SF GAKSWVKELQRRGDPNVIIALAGNKADLE RR+V  EEARQYAE+N ++HMETSAK+A NVK +FV IAQKLPK   QPER+AFPI      +K+GCC
Sbjct:    1 MASNKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVSLDDGMTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------DSFTGAKSWVKELQRRGDPNVIIALAGNKADLEARRKVDLEEARQYAEENEILHMETSAKTAVNVKDLFVAIAQKLPKNPQQPERDAFPITPVTPPKKNGCC 196

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A1E7EUF1_9STRA (Ras-related small GTPase Rab5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUF1_9STRA)

HSP 1 Score: 308 bits (790), Expect = 7.640e-105
Identity = 153/202 (75.74%), Postives = 177/202 (87.62%), Query Frame = 0

Query:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGC 202
            MSS RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ VQLD++TVKFEIWDTAGQERYRSLAPMYYRGAAAAI+VYD+TN         +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA+ YAE+NG++H+ETSAK+A NVK++FVE+A+KLPK   QPEREAFP+  P+ + ++ C
Sbjct:    1 MSSSRVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDESTVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNP--------DSFTGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEAQSYAEENGILHLETSAKNANNVKALFVELAKKLPKNAPQPEREAFPLAAPQNDNRNCC 194

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BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A5D6XMY9_9STRA (Uncharacterized protein n=23 Tax=Oomycota TaxID=4762 RepID=A0A5D6XMY9_9STRA)

HSP 1 Score: 308 bits (790), Expect = 8.770e-105
Identity = 160/206 (77.67%), Postives = 175/206 (84.95%), Query Frame = 0

Query:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRP--RAEQKSGCC 203
            M+ G+ CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD  TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK        +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA QYAEDN ++HMETSAK+A NVK +FV IA++LPK   QPEREAFPI  P  + + KSGCC
Sbjct:    1 MAQGKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVGLDDGLTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------DSFTGAKSWVKELQRRGDPNVVIALAGNKADLEARRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPHQPEREAFPITPPTNQKQNKSGCC 198

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FJC7_ECTSI	1.190e-131	95.07	Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835Z7I1_9STRA	1.070e-111	83.92	Rab5, rab family GTPase n=1 Tax=Tribonema minus Ta...	[more]
F0YJN1_AURAN	1.500e-109	77.83	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A6V1MPB5_HETAK	1.380e-107	80.30	Hypothetical protein n=2 Tax=Chattonellaceae TaxID...	[more]
A0A7S1ZIQ9_TRICV	6.910e-106	78.00	Hypothetical protein n=3 Tax=Mediophyceae TaxID=58...	[more]
A0A7S2RYM3_9STRA	2.010e-105	75.98	Hypothetical protein n=2 Tax=Rhizochromulina marin...	[more]
B8BUG2_THAPS	3.660e-105	77.61	Canine-like rab-type small G protein n=2 Tax=Thala...	[more]
T0Q598_SAPDV	5.760e-105	78.43	Ras-like protein Rab-5A n=4 Tax=Saprolegniaceae Ta...	[more]
A0A1E7EUF1_9STRA	7.640e-105	75.74	Ras-related small GTPase Rab5 n=1 Tax=Fragilariops...	[more]
A0A5D6XMY9_9STRA	8.770e-105	77.67	Uncharacterized protein n=23 Tax=Oomycota TaxID=47...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..150
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 155..177 score: 37.28 coord: 32..48 score: 32.53 coord: 50..72 score: 50.66 coord: 9..30 score: 50.96 coord: 120..133 score: 51.08
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 14..203 e-value: 1.0E-4 score: 18.3
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 6..180 e-value: 3.5E-27 score: 106.3
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 11..179 e-value: 3.3E-11 score: 24.0
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 9..180 e-value: 5.8E-83 score: 291.6
None	No IPR available	GENE3D	3.40.50.300		coord: 6..203 e-value: 6.1E-62 score: 210.5
None	No IPR available	PANTHER	PTHR24073:SF1090	RAS SMALL GTP-BINDING FAMILY PROTEIN-RELATED	coord: 7..185
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 7..185
None	No IPR available	PROSITE	PS51419	RAB	coord: 3..203 score: 31.629
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 9..172 e-value: 1.6E-28 score: 97.5
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 10..177 e-value: 6.5E-57 score: 191.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 8..194

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig1046	contig	P-lacustris_contig1046:22904..29492 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig1046.454.1	mRNA_P-lacustris_contig1046.454.1	Pleurocladia lacustris SAG_25_93	mRNA	P-lacustris_contig1046 21569..29492 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-lacustris_contig1046.454.1 ID=prot_P-lacustris_contig1046.454.1|Name=mRNA_P-lacustris_contig1046.454.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=204bp
MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKV
QLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQI
IESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAED
NGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKS
GCC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005225	Small_GTP-bd_dom
IPR001806	Small_GTPase
IPR027417	P-loop_NTPase