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Homology
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: D7FJC7_ECTSI (Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC7_ECTSI) HSP 1 Score: 377 bits (967), Expect = 5.020e-125 Identity = 193/203 (95.07%), Postives = 193/203 (95.07%), Query Frame = 1
Query: 1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 609
MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEAR YAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPR EQKSGCC
Sbjct: 1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------ESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARLYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRTEQKSGCC 195
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A835Z7I1_9STRA (Rab5, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I1_9STRA) HSP 1 Score: 326 bits (836), Expect = 2.310e-105 Identity = 167/199 (83.92%), Postives = 178/199 (89.45%), Query Frame = 1
Query: 13 RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 609
RVCHFKLVLLGDTAVGKSCLVVRFVR+EFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK +SFNGAKSWVKELQRRGDPNV+IALAGNKADLE RRQV EEA YAE+NG+IHMETSAKSA NVKSIFVEIA++LPKA QPEREAFPIM PR ++K+G C
Sbjct: 3 RVCHFKLVLLGDTAVGKSCLVVRFVRNEFFEFQEPTIGAAFLTQTVGLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------DSFNGAKSWVKELQRRGDPNVVIALAGNKADLEGRRQVHFEEAHAYAEENGIIHMETSAKSALNVKSIFVEIAKRLPKAGAQPEREAFPIMPPRRDKKAGGC 193
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: F0YJN1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJN1_AURAN) HSP 1 Score: 321 bits (822), Expect = 2.980e-103 Identity = 158/203 (77.83%), Postives = 181/203 (89.16%), Query Frame = 1
Query: 1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 609
M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V L++ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TNK ESFNGAKSWVKELQRRGDPNVIIALAGNKADL+++R+V+SEEA+QY+E+NG++HMETSAK+A +VK +F EIA+KLPK QPER+AFPI+ P+ + CC
Sbjct: 1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQSVNLENATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNK--------ESFNGAKSWVKELQRRGDPNVIIALAGNKADLQNKRRVESEEAKQYSEENGILHMETSAKNATHVKDLFQEIARKLPKTPPQPERDAFPIIPPKHNENKVCC 195
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A6V1MPB5_HETAK (Hypothetical protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1MPB5_HETAK) HSP 1 Score: 316 bits (809), Expect = 2.540e-101 Identity = 163/203 (80.30%), Postives = 174/203 (85.71%), Query Frame = 1
Query: 1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 609
M+SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQ V L +ATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK +SFNGAKSWVKELQRRGDPNV+IALAGNK DLE RRQV EEA YA +NG+IHMETSAKSA NV+ IF++IA+KLPK Q ERE FPIM P+ E K GCC
Sbjct: 1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQTVSLPEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------DSFNGAKSWVKELQRRGDPNVVIALAGNKCDLEPRRQVPFEEAAAYAAENGIIHMETSAKSAHNVQQIFLDIAKKLPKNPPQVEREVFPIMPPKRESK-GCC 194
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A7S1ZIQ9_TRICV (Hypothetical protein n=3 Tax=Mediophyceae TaxID=589449 RepID=A0A7S1ZIQ9_TRICV) HSP 1 Score: 313 bits (802), Expect = 1.210e-99 Identity = 156/200 (78.00%), Postives = 175/200 (87.50%), Query Frame = 1
Query: 7 SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGC 606
S RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LD+ATVKFEIWDTAGQERYRSLAPMYYRGAAAAI+VYD+TN +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA YAE+NG++H+ETSAK+A NVK++FVEIA+KLPK QPEREAFPI+ P+ E +S C
Sbjct: 45 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDEATVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNP--------DSFAGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEANAYAEENGILHLETSAKNASNVKALFVEIAKKLPKTPPQPEREAFPIVTPKQENRSCC 236
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A7S2RYM3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYM3_9STRA) HSP 1 Score: 310 bits (795), Expect = 3.380e-99 Identity = 155/204 (75.98%), Postives = 178/204 (87.25%), Query Frame = 1
Query: 1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQ-KSGCC 609
M++ RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGA+AAIVVYD+TNK +SFNGA+SWVKELQ+RGDPNV+IALAGNK+DLEH+R+V++EEA YA +NG++HMETSAKSA NVKS+FVEIA+KLPK + REAFPI+ P+ Q + CC
Sbjct: 1 MAANRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGASAAIVVYDITNK--------DSFNGARSWVKELQKRGDPNVVIALAGNKSDLEHKRKVETEEAEAYALENGILHMETSAKSATNVKSLFVEIARKLPKNPPETPREAFPIIPPKTSQSRRQCC 196
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: B8BUG2_THAPS (Canine-like rab-type small G protein n=2 Tax=Thalassiosira TaxID=35127 RepID=B8BUG2_THAPS) HSP 1 Score: 310 bits (793), Expect = 6.070e-99 Identity = 156/201 (77.61%), Postives = 175/201 (87.06%), Query Frame = 1
Query: 7 SGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 609
S RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYD+TN +SF GAKSWVKELQRRGD +V+IA+AGNKADLE RRQV EEA YAE+NG++HMETSAK+A NVK++FVEIA++LPK+T QP+REAFPIM P+ ++ CC
Sbjct: 2 SNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVALDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITNP--------DSFAGAKSWVKELQRRGDQDVVIAMAGNKADLEARRQVDFEEANAYAEENGILHMETSAKNANNVKALFVEIARRLPKSTQQPDREAFPIM-PQKQESRNCC 193
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: T0Q598_SAPDV (Ras-like protein Rab-5A n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q598_SAPDV) HSP 1 Score: 309 bits (792), Expect = 9.500e-99 Identity = 160/204 (78.43%), Postives = 173/204 (84.80%), Query Frame = 1
Query: 1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGCC 609
M+S + CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK +SF GAKSWVKELQRRGDPNVIIALAGNKADLE RR+V EEARQYAE+N ++HMETSAK+A NVK +FV IAQKLPK QPER+AFPI +K+GCC
Sbjct: 1 MASNKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVSLDDGMTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------DSFTGAKSWVKELQRRGDPNVIIALAGNKADLEARRKVDLEEARQYAEENEILHMETSAKTAVNVKDLFVAIAQKLPKNPQQPERDAFPITPVTPPKKNGCC 196
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A1E7EUF1_9STRA (Ras-related small GTPase Rab5 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUF1_9STRA) HSP 1 Score: 309 bits (791), Expect = 1.250e-98 Identity = 153/202 (75.74%), Postives = 177/202 (87.62%), Query Frame = 1
Query: 1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKSGC 606
MSS RV HFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ VQLD++TVKFEIWDTAGQERYRSLAPMYYRGAAAAI+VYD+TN +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA+ YAE+NG++H+ETSAK+A NVK++FVE+A+KLPK QPEREAFP+ P+ + ++ C
Sbjct: 1 MSSSRVHHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVQLDESTVKFEIWDTAGQERYRSLAPMYYRGAAAAIIVYDITNP--------DSFTGAKSWVKELQRRGDPNVVIALAGNKADLESRRKVEFEEAQSYAEENGILHLETSAKNANNVKALFVELAKKLPKNAPQPEREAFPLAAPQNDNRNCC 194
BLAST of mRNA_P-lacustris_contig1046.454.1 vs. uniprot
Match: A0A5D6XMY9_9STRA (Uncharacterized protein n=23 Tax=Oomycota TaxID=4762 RepID=A0A5D6XMY9_9STRA) HSP 1 Score: 309 bits (791), Expect = 1.440e-98 Identity = 160/206 (77.67%), Postives = 175/206 (84.95%), Query Frame = 1
Query: 1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKVQLDDA-TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQIIESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAEDNGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRP--RAEQKSGCC 609
M+ G+ CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGAAFLTQ V LDD TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK +SF GAKSWVKELQRRGDPNV+IALAGNKADLE RR+V+ EEA QYAEDN ++HMETSAK+A NVK +FV IA++LPK QPEREAFPI P + + KSGCC
Sbjct: 1 MAQGKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGAAFLTQTVGLDDGLTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNK--------DSFTGAKSWVKELQRRGDPNVVIALAGNKADLEARRKVEFEEAHQYAEDNDILHMETSAKTAVNVKDLFVAIAKRLPKNPHQPEREAFPITPPTNQKQNKSGCC 198
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 380.9 |
| Seed ortholog evalue | 3.6e-103 |
| Seed eggNOG ortholog | 2880.D7FJC7 |
| Preferred name | VPS21 |
| KEGG ko | ko:K07889,ko:K17785 |
| KEGG Pathway | ko04014,ko04144,ko04145,ko04962,ko05146,ko05152,map04014,map04144,map04145,map04962,map05146,map05152 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000011,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005769,GO:0005770,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006906,GO:0006914,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007154,GO:0007165,GO:0007264,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019867,GO:0022411,GO:0022607,GO:0023052,GO:0030139,GO:0031090,GO:0031410,GO:0031901,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032386,GO:0032509,GO:0032511,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033365,GO:0034058,GO:0034613,GO:0035556,GO:0035639,GO:0036010,GO:0036094,GO:0036257,GO:0036258,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048284,GO:0048308,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0061024,GO:0061025,GO:0061709,GO:0061912,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090087,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:1901265,GO:1901363,GO:1903008,GO:1903827 |
| EggNOG free text desc. | GTPase activity |
| EggNOG OGs | KOG0092@1,KOG0092@2759 |
| Ec32 ortholog description | Rab5, RAB family GTPase |
| Ec32 ortholog | Ec-14_005840.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03029,ko04031,ko04131,ko04147 |
| Exons | 5 |
| Model size | 1947 |
| Cds size | 612 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815316.9941018-UTR-P-lacustris_contig1046:21568..22903 | 1622815316.9941018-UTR-P-lacustris_contig1046:21568..22903 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1046 21569..22903 - |
| 1693493472.17601-UTR-P-lacustris_contig1046:21568..22903 | 1693493472.17601-UTR-P-lacustris_contig1046:21568..22903 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig1046 21569..22903 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815317.0106688-CDS-P-lacustris_contig1046:22903..22995 | 1622815317.0106688-CDS-P-lacustris_contig1046:22903..22995 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 22904..22995 - |
| 1693493472.1870944-CDS-P-lacustris_contig1046:22903..22995 | 1693493472.1870944-CDS-P-lacustris_contig1046:22903..22995 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 22904..22995 - |
| 1622815317.0292618-CDS-P-lacustris_contig1046:23307..23417 | 1622815317.0292618-CDS-P-lacustris_contig1046:23307..23417 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 23308..23417 - |
| 1693493472.1963959-CDS-P-lacustris_contig1046:23307..23417 | 1693493472.1963959-CDS-P-lacustris_contig1046:23307..23417 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 23308..23417 - |
| 1622815317.0406718-CDS-P-lacustris_contig1046:25672..25779 | 1622815317.0406718-CDS-P-lacustris_contig1046:25672..25779 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 25673..25779 - |
| 1693493472.2058456-CDS-P-lacustris_contig1046:25672..25779 | 1693493472.2058456-CDS-P-lacustris_contig1046:25672..25779 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 25673..25779 - |
| 1622815317.0507696-CDS-P-lacustris_contig1046:27422..27598 | 1622815317.0507696-CDS-P-lacustris_contig1046:27422..27598 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 27423..27598 - |
| 1693493472.2164006-CDS-P-lacustris_contig1046:27422..27598 | 1693493472.2164006-CDS-P-lacustris_contig1046:27422..27598 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 27423..27598 - |
| 1622815317.0645282-CDS-P-lacustris_contig1046:29365..29492 | 1622815317.0645282-CDS-P-lacustris_contig1046:29365..29492 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 29366..29492 - |
| 1693493472.2279193-CDS-P-lacustris_contig1046:29365..29492 | 1693493472.2279193-CDS-P-lacustris_contig1046:29365..29492 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig1046 29366..29492 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1046.454.1 >prot_P-lacustris_contig1046.454.1 ID=prot_P-lacustris_contig1046.454.1|Name=mRNA_P-lacustris_contig1046.454.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=204bp
MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGAAFLTQKV QLDDATVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDVTNKASTGRQI IESFNGAKSWVKELQRRGDPNVIIALAGNKADLEHRRQVQSEEARQYAED NGLIHMETSAKSAQNVKSIFVEIAQKLPKATVQPEREAFPIMRPRAEQKS GCC* back to topmRNA from alignment at P-lacustris_contig1046:21569..29492- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig1046.454.1 ID=mRNA_P-lacustris_contig1046.454.1|Name=mRNA_P-lacustris_contig1046.454.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7924bp|location=Sequence derived from alignment at P-lacustris_contig1046:21569..29492- (Pleurocladia lacustris SAG_25_93) ATGAGTTCGGGGAGAGTGTGCCACTTCAAGCTTGTCTTGCTGGGGGACAC
GGCCGTCGGAAAGTCGTGTCTCGTTGTGCGTTTTGTCAGGGACGAGTTCT
TCGAGTATCAGGAACCGACGATCGGAGGTAAGGAGGGTGGTGAGGGTTTC
ATCCCACGTGCTTCGCTGAGATCGCTGTATGTGGGTTGTTTGCGGCGGAA
GCCACACGCTGTACTCCCAGTAGACTTTAAGTAGAAAAGGCGCCCGAGGG
GGCGTGTGTTTGTGGGGATGTGGGGAGTGAAGTAATCTTGCGAATTTTTG
GTACATAGGACAGTTTAGCATTGTGGAGTTAAGCGCCGCCCGTATGTCTT
CTTTCCTGGCACGAGCTTGCCGCACATTCCTTTGCATTTGGGTTTCTATA
TAGTCAATCGGTGATGGAGTTTAGTTTGGCCGATTTGGACATCGGCATCT
ATGATGTCAGTTGGCATTTTGACCATTTCGCAACATTGAATTATGCGGAC
GGGGCAAACATGTGGGTTACCACCCTCCGCTTGGCTCGAACGTTTGAGTA
CAGATCCCGTAGAACTAAAGGTGTCACAGATGCTGTACCACAGCCAGAGG
GTGCCACAAGGCGGGAGAGTTCTCTGTTTTGGGAAAGCTCTCGACGATAT
CGTCATCGCCGGCCGCACGGGCGGGTCATCGAGAGCTCCATCGTTGTTTG
GGGATTAGACTTCTGAATTTGTCCTACGGATGTGAGTCGTGGTCGTTACC
GCGCCGGGCACGGCGTACGTCGCCATCGTGTTGGCCTATTCTCACTCCTC
CCGAAATACAGCACGTGGAAAGGCTTGAGCAAGAGAGATGCATGTCAGAG
TCAAGGGAGAAGAGGCCCCAGGACCCGAAGAAAGCTGTGTTCTTGCCTTT
TGCGCGTGCGACAATTGTACACATCGAAGTCCTCGTCCTACGAGGGGAGA
AAGACACCGACAAGTAACCGGCTCAGAGCTCCTCTTGCGACGTGGCCTGC
CATCGTCTCCTGCACTCCACAAGCAGATTTGGTTTTACAGTTTTTTGTCG
CGAGGTACGCCGCTATGCGAACGCGTAGCTGAAAACCTTCGTGTAGCCGG
GCTGGAGGCCCGTGGGACGACTCCGAGGCTACCGTGGGGTTTTGAGGACG
TCGTTGAATGAGTATTTTCCGCGACAGACTATGGGGCTGCGGGTGCCGGC
GTCTTAAATTATGCACCCAACAAAGAGTGTTGCCGAGGACGTTATCCACG
CAGGGCTTATTGAGCAAGAGCTATTTAACGTGTCGTTGAGAAAACTCAAC
ATGTGTCCCATTTCCGAGAAGGGGTATCCGCACCGCCACCTTTCCTCTCT
AGGCACTTGTTGTGTGTACCAGGTCTGTTGGTTGACCGACTTTTAGGAGG
ATATCGGGGGGGGTATCCTTTGTCGCGGACGCTCCTTTGCGGTTCCGGAG
CTCCCGCTTGCTCTAGTCGAAGCGATGCAGACGAAGGTGTTGCGAACTCG
CTAAAAGTGAGAGTTGCTCGGTTATGTCTGTCTTCACGGGTCCTGCGTGA
TCATCGTTGTGTTGTTTACATCGTTCTTCGCAGTTCTGACCTGCTGCTGC
TAGGTAAACTCGTAACAGGTGTGTGATGAACCGGTGGACGCTGATACCAG
CAGACACATGTTGCGAAAATCGCATCGGCGCGAAGGCTTCAAACCCGATG
AGGTTTACGACGGTTACCTCTTCCTTACGGCGCGTCTCGCACGAACGCCT
TCCTGTTCTGTACTGTAGTGCCCTAGACGCGCAAGACCCCCCCACTCACT
TGCTGAATCCGTCAAGCTTAAATGTTCAATACACGACCGCCTGCCGCTGC
TGGGAACCTCTTTGGGATGTTCGTTTTGTGCTTGTTCACAACAGCTGCGT
TTCTGACACAAAAGGTGCAGCTCGATGACGCGACTGTAAAGTTCGAGATT
TGGGATACCGCCGGACAGGAGCGATACCGCAGCCTTGCACCCATGTACTA
CCGGGGAGCCGCGGCGGCGATCGTGGTATACGACGTTACGAACAAGGCAA
GCACGGGAAGGCAGATAATTGTTGCACCTTTCAAGATGCTTTTTAACAAC
CCCGCTTGTTCTTTGTTTGTGCGACATATTTGATGTTGCCACAACCACCC
GCAACTGCGATAGGCAAGGGTGCGTTCGGCAAGAAGTGGCATGAATATTT
TCATGTATATTCCTTATTTTGGAAAGGACGCAAGATATTCAGGGCGGAGG
CGAGGGTGTTAATCAAATACTCAGAGTATCCATTTTTTGGATCAGGGGTG
TGTGTCAAGTACAGTATCTGATTTTTTTTTCTTTGTTTGAGGGGCGGGAG
ATTTCAATACAACGGGTGTGTTTAAACCAACGGGTGTGTTTAAACTTCTA
TTTATTTTCCGCATTTTTGTTTTGGCGGGACGCACGCAAATTTCATGTAG
ACGTGCGTTTGTCAAACATTGGTATTGCAGAGAGGGCAGCATGTGTTTTT
TAACTTACCTTTTTATTCCTTGTTTTGAGAAGAAAAGAGTACGCCCGAAC
TGCATGGACAGAGGAGCAATGTTTTTAGCTACGAGTGCGCGGGCACGGTG
CACTTTACAGCATTGCACATTGATCTTTGTGCTGTGCTAAGTGTCTAGGG
TTGTGATTTCGTCATTCGTGTATGTCTGGTAGTGGAACGACACAAGAGAA
GACAGCGGTTCGCGCACGCGGCGGGCAGTCCAAACAGCAAGCAGCAAAAA
AAAAAACATGCTTGGCATTCGAGCCGCGTGTTCCCCTGGTCAGTTGGTGT
GCTTTGTCCCTGCTAGTGCCTGCAGGCTGCTGTTGGGGTGGTAGGCATCA
TGCCGATTCCATGTGGAACTGGATGCATTCGTGTGCCTTTGAGGGTGGTT
CGTGCGGCTAACGGCGGCTCTCGGGTTAGTATTTCGGCACCAATGCCGCT
GCTAAGGCTTTTGCCCCCAAGGCCGTTGTAGAGCAGCAGCCTGGACATAA
TTGCAGCCAATGTTCGAACTACTGTGGACCATACAAGCTCGCCGTTGATG
TGGAGGCCCCAAATCAAACTCGACACACTGGGTGCACACACAGGCGATGC
AAGGGTTTAGTACAAACTCGTGGTCGATGTCGATGTCGACGGTGGGTGAA
GTTACAGACGCCAGCGAACCCTGCGCGAGCCTTGGCTCCTCACACACGGT
GTGTCTCAAATTCTGTTTTTCCGCAGCACCAAATACAGCTCGTGTATCCT
GTGGATACGGATGATGAACGGCACGGGCAAAGCCCCTATCCTAACCAACG
ACCGTCCCACTCGTAGCGAGGCAGCCGTGATGATATGGCGGCTCAGTCAG
CGGGCGATGCCTTGCTTTTTTACTCCGTTCTGCGTGTGTATTTTTGTGAC
CACTTTCGACAAGAGTTTCGAGTTTTGTGTCTCATTTTCCGATTGGACCC
AGGAAATGCTCCAACCAGGCCGATCCACGCTACAGGGTGGTCCTGCATTT
GTTTCCCAACACACTAGTGTACCGAAACATGTGACGGTCTCGCATATTGT
TTCCGGACCGTAACATGCGTCACAGGCGACGGCTATGAACAACGTGCGCG
GAGTTGTAGTGTATTGCGCATCCTCCCTGCCCGATGACTCCCTCCCCCGC
TGTCGGACTGCGTTTGGTGCTCTTGTGTTGTTGACTTCGGGTTTTGCGTC
CAACGTCGTTCAGGAGTCTTTCAACGGGGCCAAGTCGTGGGTGAAGGAGC
TGCAGCGTAGAGGAGACCCGAACGTAATTATCGCGCTCGCAGGAAACAAG
GCAGATCTCGAGCATCGCCGGTGAGGAAAAAAATCATAATGTTTTGATAT
TGTCGCTTCTGCTTTGCGTCTAGGAAGGGTATGGCTGTTCTTTTGTCGAC
AGCCTTGCTTTTCCTCGAGCAAGTATGAATCCCATTTTTGACGCATATCG
ACAGGAGGGATGTGTTTTGGGTTTCGAGAGAGACAATCGTTTATGGGGTT
GTCAACCAAGTCGGAAAACCGAGGGGGCTGGCAGGGGGACTGACGTGATC
AAGTACCTTTGTTTGCTGCATGCTGCCAAAGCTTCTGTTGGCGCAGCACA
TGGTTTTCCTTTTTTGTGCGCATATGCGTACGACTGCTGTGACTCGTGGC
GGTGATGCAATCAATCTTTCTCGCGCAGTTGACTCTCGGGTAGCTTCGCA
TATGAGCTATGTCGGCAACACAGAAAATGCTGAAATGGCGTCGGGGTTGA
AATACGATGACGAGAGGAGCTCAGCTTGGGCCCTCTCCTTGTTGAGAAGA
TGAAGATGAAGATCAAGCATGGACGAACGATCGCGCGCTTGCTCGAACTA
GCGAGGCTTGCGGACATTTCACGCAGCAGAAGTCTCGCTTGTTGAGGGCT
GCTGTTACTGTTTTCGTCGTCATTTTCGTGCAATAGCAAGATAGCAAGAG
TGCCCTCAACGGCCTTTGCGGCCAGCGGCTGTGGCTAGGGAGGAGAAAGG
AGTGCGCCATGGCACCCGTTTCTTTGGGGAGTGCGTGCGTGAACCGCGAG
AACCGACGGAAAAAACACAATTGTTTGGGGAGGGGGGGATTCGCGGTCTG
TTTGTGTCCGGCGCCTGATTGGTTGGGTTCAGTCAGCGTACACAAACCAC
ACCATTTTACCGCAATCGGGTTCCGTGAGCGACGCAAATTACCAGACCTA
CAGAAGATACCACCCACCCCTGCAGAAAATTAGCTCAAGGTGCCCAGAAG
AACAACATTTTCAGAGTAAAAGGACGACGTCGCATTTCACGCCCCTTACA
GAATACAACACAGGGGTAATTTTTTTGTAACACTTGAGTAGGGCACTGGG
GTGGTGTGTCATGATCTTGGGGGTTTACGATTGGTGATGTTTTATGTTTT
GTTTTTTTCATCCCATCTGTTGTGGACGCTAGCCTTCTTTACACCTTTCG
GCGATGTTGGAGGGTGACACCCAGCAGCGGTCACACAGAAGAGTTCCTCT
CCTGAGGCCCCCATCCGCCCTCCTGCGGTCCTTAATTTTATCGCGAGAAG
GGTTCAGCCGTTCCTTTCCCTCGTCGACAAGTTTGCGTCTTGTATTTTTC
TAGTTTTATTTTTTCCAACGCGTCTCAAAAAAATAATTTCTTATTTCGTT
TTTTTGAAAAAATCAACCCCCGCTCCCTGCATGCTAGAAGAAACCCATGT
TGCGTGCCAGTCACCCAAGTGTTGTTGGTGACTTCGTTATTTGGTGCTAA
TTATTTGTTCTAAGCCACCGTATTGATCATTGCGAGACGGTTTCAACAGG
GAATGGGAAGCTCCAACTTGTGCACGAGAGATCTAATCGAGATCTACCCC
TGAGTTGCTTGCTTAAGCCGTGCCGTGGTCGCTTCGTGGAGTTAGGAGCC
GTCACTTCGCTTTATATGTGCACGTTTCAGAGCTTAAGCAGGCTTTTCTT
GAACCTCAACACACAACCGCCGCGCAGCGGATACAACCGAGAGAGAGAGA
GAGAAAAAGCGAGCCCTTTCTTTTTTTTCGTGCTTTTCTTTTTCCTTGCG
CCCGCCTTTATGCTGCTCGTCCACCGAAGGTACAAAAGGTACATTATGTT
AGCCAACAGTATCTGTTTTTCCAAGAAGAGGTTCATCTGCAACTCAACTC
TAGGAGAATTTACTGTCAGACGATACAATCTTTGACCATTTCTCGATGGG
TGTCCTCCTCGGAACCGCCTCGGAAAATCCCGGTGATCACCAAATAGGAG
CGCAGCGGCGTTTCTTGAGGAATAAGAAAGCCAGACATGTTTTGGGGTGT
CGCGTGTGCCCGTGAGCCTCATGATCATACCCGGCAGATCGGTATCGATG
ACCGAGTACCCTATGCATGACACAATTAGCCTGGTTCTTTTTTCCTTTTT
GTTGGCGGCTCTTTCTCTGTTCTCACCCCCTTCCTCTTCGTGCTCAACGA
TTTCATTAACAGGTAGGAGTAGCATTTAACGCGGCCCATCGCTTTGTCCC
GCCGGTCGTGATCACGTGATCAGGAGTACCCCCCCCTACCCCGCCGCCGC
CGCCTTTCTTTGCGTGACCTCCCAGGCAAGTACAGTCGGAAGAGGCTCGC
CAGTATGCTGAAGACAACGGGCTTATTCACATGGAAACCTCGGCCAAGAG
CGCGCAAAACGTCAAGAGCATTTTCGTCGAGATCGGTGAGAGTGAGAGTG
TGACAAGACGATGATGCGGTGGTTTCATTCTTGGGCATAGGAGGTGTAGG
AGATGTAGGACACCTTCTCTTCTATTCTCCTCTCGTGTCAGCAGAAAGAG
CAACGCGGACTTGTCGACGTTTGATTTGCGTGAGTTGCTCTTGAGTTTCA
AGTGTCAAGCCACCCTATGAACGCCTCAAGAATCCCCTTCGAGCACCCGT
GCCATTCCCCTGCCACAGAAGCGCACCCCTCTACTAACCGCCCCTTTACC
CTCTCGATCGCTTGCGCCGCGCGCCACCAAACTCCACCTCACGGCAGCCC
AAAAGCTTCCTAAAGCCACGGTGCAGCCGGAGAGGGAAGCGTTCCCCATC
ATGCGGCCGAGGGCGGAGCAGAAATCCGGATGCTGCTGAAAAAGGCCTTA
GTTTTCTCCCCCGCTCTTCTGCCATCATGCCATTCCTCCCTTATTTCCTC
GGAAGTTCCACACAGCAGCTGTAGTTGTTGCTGTCAACGCTGGGTTCGCT
TGTCGGTTCGTCCCTATCGGCCTGTCTGAGCGCAGCTCCCGGTATGATAT
CCCGCCGGTAATATATATTGGTGTCGGATAGGCCGCTGCGAATAGCGGTG
GAGGAGTGGGGCCCAGGTCGAATCGATTTTGTGGGGAAATTATTTTCGGT
TGTTCGGTACATAGACTCTGTGACGAGACGTTCCGCCGCTAACGCTAACT
TTCTCGAGGAATGGAGATGCGCTACTGTAGTGCAGTGGCAGCGCTTGTGT
ATATGGTACATGGGGATTTGTGTGGGGCCTTTCCGAGGCGGGAGGCAAAG
GACCCAGGGGCGAGTGGGACTGGTATGCCATGGGTGTGGTGCGTCGATTG
ATTTTCTCATGACACTCACTCGGCACCAGCTACTGCGTATACTTTCGTGC
GAGACTTTGGGGGGCGGGCTGCAGGGTCAGCGGGAGCGGTGGTAATACCA
AGCGCCCGCCGACTTCTAGCATAGAAGTGTGGAGGTTGAGGCCTCTAGAA
TATGGAGTTTGAGACCTGTGTTCCGTGTTACGTTGCCTCATCGTGTTAGC
TTTTTGCGGCTTTTTTTTTCGAGTCGATTTGTCAGCATGTGTCAACATGT
GTCAAGGTACACCAACGCGTCAGGTCATGTGCGATTTGATTCAATGGAGT
TTCTATTGTGTGTATCGTTCGACGTCTGGAGTTACTCTGGGCGTGTGCGC
CCTCGTCGTCCTCGGAGGGTGTTTCTGCGCGGTGTGGGCTCTTGTCTTTT
GTGAATACTTCGAGGGTATCCGCGTCATAGCGGGGGTGGGCTGTGCAAGG
GCGAGGAACAAAAAACTGGCGGCGTTGATTTCTTTTGTGGCCATCGCTTT
GGCTTTTATTCGAACAGGGGCCATAAGCACCACGTCGCTTTCTGCTGCTG
GCTGCTGGTCAGGCATCCCTTTTGCTTTGCATGTGTTTTTTGTGCTATTA
TTTTGTCTTTTTTTGAGGACATGACCATGAATGTATCGAAAAACAGCCGC
AGGAAATGAGAGCAAGGTTGACAGGGTTAGTGTCACCATACCTCACCTTC
GAGGTATCAACTTCGTGCCGCGTTTGTCCCTTCGACGAAAAAAGTCCTGC
AGCTGTACAGCATGGCCATCACTTCCATGTGGAGGGCCCACCGAGAGGAA
GTCCTCCGCAGAGTAATCAGTAACGTGATAACGAACGGCTATAGAACATT
CAATCATCTACCGGGAAACATCAG back to topCoding sequence (CDS) from alignment at P-lacustris_contig1046:21569..29492- >mRNA_P-lacustris_contig1046.454.1 ID=mRNA_P-lacustris_contig1046.454.1|Name=mRNA_P-lacustris_contig1046.454.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1224bp|location=Sequence derived from alignment at P-lacustris_contig1046:21569..29492- (Pleurocladia lacustris SAG_25_93) ATGAGTTCGGGGAGAGTGTGCCACTTCAAGCTTGTCTTGCTGGGGGACAC GGCCGTCGGAAAGTCGTGTCTCGTTGTGCGTTTTGTCAGGGACGAGTTCT TCGAGTATCAGGAACCGACGATCGGAGATGAGTTCGGGGAGAGTGTGCCA CTTCAAGCTTGTCTTGCTGGGGGACACGGCCGTCGGAAAGTCGTGTCTCG TTGTGCGTTTTGTCAGGGACGAGTTCTTCGAGTATCAGGAACCGACGATC GGAGCTGCGTTTCTGACACAAAAGGTGCAGCTCGATGACGCGACTGTAAA GTTCGAGATTTGGGATACCGCCGGACAGGAGCGATACCGCAGCCTTGCAC CCATGTACTACCGGGGAGCCGCGGCGGCGATCGTGGTATACGACGTTACG AACAAGGCAAGCACGGGAAGGCAGATAATTCTGCGTTTCTGACACAAAAG GTGCAGCTCGATGACGCGACTGTAAAGTTCGAGATTTGGGATACCGCCGG ACAGGAGCGATACCGCAGCCTTGCACCCATGTACTACCGGGGAGCCGCGG CGGCGATCGTGGTATACGACGTTACGAACAAGGCAAGCACGGGAAGGCAG ATAATTGAGTCTTTCAACGGGGCCAAGTCGTGGGTGAAGGAGCTGCAGCG TAGAGGAGACCCGAACGTAATTATCGCGCTCGCAGGAAACAAGGCAGATC TCGAGCATCGCCGGAGTCTTTCAACGGGGCCAAGTCGTGGGTGAAGGAGC TGCAGCGTAGAGGAGACCCGAACGTAATTATCGCGCTCGCAGGAAACAAG GCAGATCTCGAGCATCGCCGGCAAGTACAGTCGGAAGAGGCTCGCCAGTA TGCTGAAGACAACGGGCTTATTCACATGGAAACCTCGGCCAAGAGCGCGC AAAACGTCAAGAGCATTTTCGTCGAGATCGGCAAGTACAGTCGGAAGAGG CTCGCCAGTATGCTGAAGACAACGGGCTTATTCACATGGAAACCTCGGCC AAGAGCGCGCAAAACGTCAAGAGCATTTTCGTCGAGATCGCCCAAAAGCT TCCTAAAGCCACGGTGCAGCCGGAGAGGGAAGCGTTCCCCATCATGCGGC CGAGGGCGGAGCAGAAATCCGGATGCTGCTGACCCAAAAGCTTCCTAAAG CCACGGTGCAGCCGGAGAGGGAAGCGTTCCCCATCATGCGGCCGAGGGCG GAGCAGAAATCCGGATGCTGCTGA back to top
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