prot_P-lacustris_contig1045.447.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-lacustris_contig1045.447.1
Unique Name	prot_P-lacustris_contig1045.447.1
Type	polypeptide
Organism	Pleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length	185

Homology

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 347 bits (889), Expect = 2.050e-120
Identity = 176/184 (95.65%), Postives = 183/184 (99.46%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184
            MRKLKYHEQKLLKKVDFL+WKSD+NIREIQVLRRYLVQNRDDYVKYN+IVGLITK+TARLKTLDASDEFRIKMTEQLLEKLF+MGIINTKKSL+KTETASVS+FCRRRLPVVMVRLKMSETLTEA TYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA)

HSP 1 Score: 279 bits (714), Expect = 9.590e-94
Identity = 138/184 (75.00%), Postives = 161/184 (87.50%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184
            MRKLKYHEQKLLKKVDFL+WKSD+NIREI+VLRRY +Q+R+DYVKYNR+VG +T + A+LKTL ++D FR+KMT QLL KL S+G+I+T+KSL K E  +VSAFCRRRLPVVMVR KMSETL EA T+IE GH+RVGP+ VTDPAFLVTR+MEDFVTWVD SKIKR I  Y DK+DDFDLLGEG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIKVLRRYHIQDREDYVKYNRLVGHVTSLAAKLKTLSSTDPFRVKMTSQLLSKLQSIGVIDTEKSLIKAEQLTVSAFCRRRLPVVMVRAKMSETLREAITFIESGHIRVGPNVVTDPAFLVTRTMEDFVTWVDSSKIKRTIAKYNDKLDDFDLLGEG 184

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA)

HSP 1 Score: 273 bits (697), Expect = 3.600e-91
Identity = 134/182 (73.63%), Postives = 159/182 (87.36%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 182
            MR+L++HEQKLLKKVDFL+WKSD+NIREI++LRRY +Q+R+DYVKYN+I G ITK+TA+LK L   DEFRIKMT+ LL KL++MG+I TKKSLS+ ET + SAFCRRRLPVVMVR+KM+ETL EA T+IEQGHVRVGP  VTDP FLVTRS EDF+TWVD SKIKRA+  Y DK+DDFDLLG
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK)

HSP 1 Score: 271 bits (694), Expect = 1.030e-90
Identity = 132/182 (72.53%), Postives = 158/182 (86.81%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 182
            MRKLK+HEQKLLKKVDFL+WKSD+NIREI+++RRYL+Q+R+DY KYN+I G + K+ A+L+ L  +D+FRIKMTE LLEKLF+MG+IN+KKSL   E  +VSAFCRRRLPVVMVRLKMSET+ EA T+IE GHVRVGPH VTDPAFLV R+MEDF+TWVD SKIKR I  Y DK+DD+DLLG
Sbjct:    1 MRKLKHHEQKLLKKVDFLQWKSDQNIREIKIIRRYLLQDREDYTKYNKICGHMWKLVAKLRALPPTDQFRIKMTEDLLEKLFNMGVINSKKSLQLVEKVNVSAFCRRRLPVVMVRLKMSETIKEAITFIEHGHVRVGPHCVTDPAFLVPRAMEDFLTWVDSSKIKRTIMKYNDKLDDYDLLG 182

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: D8UBE0_VOLCA (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=D8UBE0_VOLCA)

HSP 1 Score: 259 bits (663), Expect = 5.230e-86
Identity = 128/181 (70.72%), Postives = 154/181 (85.08%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 181
            MR+LKYHEQKLLKKVDFL WKSD N+RE+QVLRRY +Q+RDDY KYN+I G+ITK+T+ LK LD  D  RI++T+QLLEKL++MG++ TKKSL + +  + +AFCRRRL VVMVRLKMSETL EAAT+IEQGHVRVGP  VTDPAF VTR+MEDFVTWVD SK+KR +  Y DK+DD+DLL
Sbjct:    1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCRRRLAVVMVRLKMSETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A0A250X5I3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X5I3_9CHLO)

HSP 1 Score: 254 bits (650), Expect = 4.980e-84
Identity = 126/181 (69.61%), Postives = 156/181 (86.19%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 181
            MR+LK+HE+KLLKKVDFL+WK++ N+RE+QV+RRY +Q+RDDY KYN+IVGLITK+T+ LK LDA D  RI++T+QLLEKLFSMG++ TKKSL +TE  +VSAFCRRRL VVM+RLKM+ET+ EA T+IEQGHVRVG   VT+PAF VT +MEDFVTWVD SKIKR +  Y DK+DD+DLL
Sbjct:    1 MRQLKFHEKKLLKKVDFLKWKNEDNLRELQVMRRYHIQDRDDYKKYNKIVGLITKLTSVLKQLDAKDTARIELTDQLLEKLFSMGVVPTKKSLVQTEKLAVSAFCRRRLSVVMMRLKMAETMKEAVTFIEQGHVRVGTETVTNPAFHVTTNMEDFVTWVDTSKIKRKVLMYNDKLDDYDLL 181

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: L1JBM1_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBM1_GUITC)

HSP 1 Score: 254 bits (650), Expect = 5.150e-84
Identity = 123/181 (67.96%), Postives = 149/181 (82.32%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 181
            MR+LKYHE+KLLKKV+F +WKSDKN+REIQ+LRRY VQNRDDY KYN+I GLITK+T++LK L   D  R+K TE L++KL++MG+I+TKKSL + E    SAFCRRRLPVV+VRLK  E L EA T++EQGH+R+GP  VTDPAF VTRSMEDF+TWVD SKI+R +  Y D VDDFDLL
Sbjct:    1 MRQLKYHEEKLLKKVNFFQWKSDKNVREIQILRRYRVQNRDDYHKYNKIAGLITKLTSKLKELRQDDPTRVKTTELLIDKLYNMGLISTKKSLLQCEKIPTSAFCRRRLPVVLVRLKFCENLKEAVTFVEQGHIRIGPEVVTDPAFHVTRSMEDFITWVDSSKIRRKVMKYNDAVDDFDLL 181

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A8IEP3_CHLRE (Small nucleolar ribonucleoprotein U3 component n=4 Tax=Chlamydomonadales TaxID=3042 RepID=A8IEP3_CHLRE)

HSP 1 Score: 254 bits (649), Expect = 7.070e-84
Identity = 125/181 (69.06%), Postives = 153/181 (84.53%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 181
            MR+LK+HEQKLLKKVDFL WKSD N+RE+QV+RRY +Q+RDDY KYN+I G++TK+T+ LK LDA D  R+++T+QLLEKL +MGII TKKSL + +    ++FCRRRL VVMVRLKM+ETL EAAT+IEQGHVRVGP  VTDPAF VTR+MEDFVTWVD SK+KR +  Y DK+DD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKISGMVTKLTSMLKQLDAKDPARVELTDQLLEKLHAMGIIPTKKSLVQCDKLPTASFCRRRLAVVMVRLKMAETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: E1ZQC4_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQC4_CHLVA)

HSP 1 Score: 253 bits (647), Expect = 1.470e-83
Identity = 123/181 (67.96%), Postives = 152/181 (83.98%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 181
            MRKLK+HE KLL+KVDFL+WK++ N RE+QV+RRY +Q+RDDY KYN++ G++TK+ A LK LDA D  RI++T+QLL+KL +MG+I TKKSL + E  S ++FCRRRL V+MVRLKMSETL EA T+IEQGHVRVGP  VTDPAFLVTRSMEDFVTWVD SKIKR +  Y DK+DDFD++
Sbjct:    1 MRKLKHHEHKLLRKVDFLQWKNEHNQRELQVMRRYHIQDRDDYSKYNKVCGMVTKLVATLKRLDARDSTRIELTDQLLDKLHNMGVITTKKSLVQLEKLSTASFCRRRLSVIMVRLKMSETLREACTFIEQGHVRVGPDTVTDPAFLVTRSMEDFVTWVDTSKIKRKVLRYNDKLDDFDIM 181

[Close]

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A0A7S1U2R4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2R4_9STRA)

HSP 1 Score: 253 bits (645), Expect = 2.970e-83
Identity = 127/182 (69.78%), Postives = 149/182 (81.87%), Query Frame = 0

Query:    1 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 182
            MRKLK+HE+KLLKKVDFLEWKSD   RE  VLRRY VQ+RDDYVKYNR+ GLITK+ A+LK L  SD FRIK +++LL KL+ +G+I+TKKSL K E  S +AFCRRRLPVVMVRLKM+ET+  AA Y+EQGHVRVGP+ VTDP FL  R+MEDFVTW D SK+KR I  Y DK+DD+DLLG
Sbjct:    1 MRKLKHHERKLLKKVDFLEWKSDGGGREAAVLRRYHVQDRDDYVKYNRLAGLITKLVAQLKKLPPSDPFRIKKSDKLLGKLYELGVIDTKKSLEKAERISAAAFCRRRLPVVMVRLKMAETVRLAAQYVEQGHVRVGPNTVTDPGFLAKRTMEDFVTWADSSKMKRHIAKYNDKLDDYDLLG 182

The following BLAST results are available for this feature:

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot

BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FQ94_ECTSI	2.050e-120	95.65	Small nucleolar ribonucleoprotein U3 component n=2...	[more]
A0A836CN51_9STRA	9.590e-94	75.00	Small nucleolar ribonucleoprotein U3 component n=1...	[more]
W7TBD6_9STRA	3.600e-91	73.63	Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae Ta...	[more]
A0A6S9JYI8_HETAK	1.030e-90	72.53	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
D8UBE0_VOLCA	5.230e-86	70.72	Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ...	[more]
A0A250X5I3_9CHLO	4.980e-84	69.61	Uncharacterized protein n=1 Tax=Chlamydomonas eust...	[more]
L1JBM1_GUITC	5.150e-84	67.96	Uncharacterized protein n=1 Tax=Guillardia theta (...	[more]
A8IEP3_CHLRE	7.070e-84	69.06	Small nucleolar ribonucleoprotein U3 component n=4...	[more]
E1ZQC4_CHLVA	1.470e-83	67.96	Uncharacterized protein n=1 Tax=Chlorella variabil...	[more]
A0A7S1U2R4_9STRA	2.970e-83	69.78	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 107..172 e-value: 1.7E-5 score: 34.2
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 107..153 e-value: 2.3E-11 score: 43.2
IPR002942	RNA-binding S4 domain	PROSITE	PS50889	S4	coord: 107..171 score: 10.018
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 3..106 e-value: 1.3E-25 score: 101.0
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 3..62 e-value: 2.5E-7 score: 31.5
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 108..179 e-value: 3.1E-6 score: 29.2
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..180
None	No IPR available	PANTHER	PTHR11831:SF1	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3	coord: 1..180
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 27..174

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-lacustris_contig1045	contig	P-lacustris_contig1045:23385..27064 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_93	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-lacustris_contig1045.447.1	mRNA_P-lacustris_contig1045.447.1	Pleurocladia lacustris SAG_25_93	mRNA	P-lacustris_contig1045 23384..27842 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-lacustris_contig1045.447.1 ID=prot_P-lacustris_contig1045.447.1|Name=mRNA_P-lacustris_contig1045.447.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=185bp
MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIV
GLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETAS
VSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTR
SMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002942	S4_RNA-bd
IPR001912	Ribosomal_S4/S9_N
IPR036986	S4_RNA-bd_sf
IPR022801	Ribosomal_S4/S9