mRNA_P-lacustris_contig1045.447.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1045.447.1
Unique NamemRNA_P-lacustris_contig1045.447.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: D7FQ94_ECTSI (Small nucleolar ribonucleoprotein U3 component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ94_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 2.720e-117
Identity = 176/184 (95.65%), Postives = 183/184 (99.46%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 553
            MRKLKYHEQKLLKKVDFL+WKSD+NIREIQVLRRYLVQNRDDYVKYN+IVGLITK+TARLKTLDASDEFRIKMTEQLLEKLF+MGIINTKKSL+KTETASVS+FCRRRLPVVMVRLKMSETLTEA TYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIQVLRRYLVQNRDDYVKYNKIVGLITKLTARLKTLDASDEFRIKMTEQLLEKLFAMGIINTKKSLAKTETASVSSFCRRRLPVVMVRLKMSETLTEATTYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 184
[Close]
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A0A836CN51_9STRA (Small nucleolar ribonucleoprotein U3 component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN51_9STRA)

HSP 1 Score: 282 bits (721), Expect = 8.010e-91
Identity = 138/184 (75.00%), Postives = 161/184 (87.50%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG 553
            MRKLKYHEQKLLKKVDFL+WKSD+NIREI+VLRRY +Q+R+DYVKYNR+VG +T + A+LKTL ++D FR+KMT QLL KL S+G+I+T+KSL K E  +VSAFCRRRLPVVMVR KMSETL EA T+IE GH+RVGP+ VTDPAFLVTR+MEDFVTWVD SKIKR I  Y DK+DDFDLLGEG
Sbjct:    1 MRKLKYHEQKLLKKVDFLQWKSDQNIREIKVLRRYHIQDREDYVKYNRLVGHVTSLAAKLKTLSSTDPFRVKMTSQLLSKLQSIGVIDTEKSLIKAEQLTVSAFCRRRLPVVMVRAKMSETLREAITFIESGHIRVGPNVVTDPAFLVTRTMEDFVTWVDSSKIKRTIAKYNDKLDDFDLLGEG 184
[Close]
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: W7TBD6_9STRA (Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBD6_9STRA)

HSP 1 Score: 275 bits (703), Expect = 4.020e-88
Identity = 134/182 (73.63%), Postives = 159/182 (87.36%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 547
            MR+L++HEQKLLKKVDFL+WKSD+NIREI++LRRY +Q+R+DYVKYN+I G ITK+TA+LK L   DEFRIKMT+ LL KL++MG+I TKKSLS+ ET + SAFCRRRLPVVMVR+KM+ETL EA T+IEQGHVRVGP  VTDP FLVTRS EDF+TWVD SKIKRA+  Y DK+DDFDLLG
Sbjct:    1 MRQLRHHEQKLLKKVDFLQWKSDQNIREIKILRRYHIQDREDYVKYNKICGHITKLTAKLKDLKPEDEFRIKMTDDLLSKLYNMGLIPTKKSLSQCETLAASAFCRRRLPVVMVRMKMAETLKEAVTFIEQGHVRVGPTVVTDPTFLVTRSQEDFLTWVDSSKIKRAVVAYNDKLDDFDLLG 182
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BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A0A6S9JYI8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYI8_HETAK)

HSP 1 Score: 274 bits (700), Expect = 1.140e-87
Identity = 132/182 (72.53%), Postives = 158/182 (86.81%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 547
            MRKLK+HEQKLLKKVDFL+WKSD+NIREI+++RRYL+Q+R+DY KYN+I G + K+ A+L+ L  +D+FRIKMTE LLEKLF+MG+IN+KKSL   E  +VSAFCRRRLPVVMVRLKMSET+ EA T+IE GHVRVGPH VTDPAFLV R+MEDF+TWVD SKIKR I  Y DK+DD+DLLG
Sbjct:    1 MRKLKHHEQKLLKKVDFLQWKSDQNIREIKIIRRYLLQDREDYTKYNKICGHMWKLVAKLRALPPTDQFRIKMTEDLLEKLFNMGVINSKKSLQLVEKVNVSAFCRRRLPVVMVRLKMSETIKEAITFIEHGHVRVGPHCVTDPAFLVPRAMEDFLTWVDSSKIKRTIMKYNDKLDDYDLLG 182
[Close]
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: D8UBE0_VOLCA (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=D8UBE0_VOLCA)

HSP 1 Score: 261 bits (668), Expect = 7.300e-83
Identity = 128/181 (70.72%), Postives = 154/181 (85.08%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 544
            MR+LKYHEQKLLKKVDFL WKSD N+RE+QVLRRY +Q+RDDY KYN+I G+ITK+T+ LK LD  D  RI++T+QLLEKL++MG++ TKKSL + +  + +AFCRRRL VVMVRLKMSETL EAAT+IEQGHVRVGP  VTDPAF VTR+MEDFVTWVD SK+KR +  Y DK+DD+DLL
Sbjct:    1 MRQLKYHEQKLLKKVDFLRWKSDDNVRELQVLRRYHIQDRDDYKKYNKICGMITKLTSMLKRLDPKDATRIELTDQLLEKLYNMGVLPTKKSLVQCDKLATAAFCRRRLAVVMVRLKMSETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
[Close]
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A0A250X5I3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X5I3_9CHLO)

HSP 1 Score: 257 bits (656), Expect = 4.680e-81
Identity = 126/182 (69.23%), Postives = 156/182 (85.71%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 547
            MR+LK+HE+KLLKKVDFL+WK++ N+RE+QV+RRY +Q+RDDY KYN+IVGLITK+T+ LK LDA D  RI++T+QLLEKLFSMG++ TKKSL +TE  +VSAFCRRRL VVM+RLKM+ET+ EA T+IEQGHVRVG   VT+PAF VT +MEDFVTWVD SKIKR +  Y DK+DD+DLL 
Sbjct:    1 MRQLKFHEKKLLKKVDFLKWKNEDNLRELQVMRRYHIQDRDDYKKYNKIVGLITKLTSVLKQLDAKDTARIELTDQLLEKLFSMGVVPTKKSLVQTEKLAVSAFCRRRLSVVMMRLKMAETMKEAVTFIEQGHVRVGTETVTNPAFHVTTNMEDFVTWVDTSKIKRKVLMYNDKLDDYDLLN 182
[Close]
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: L1JBM1_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBM1_GUITC)

HSP 1 Score: 256 bits (655), Expect = 6.840e-81
Identity = 123/181 (67.96%), Postives = 149/181 (82.32%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 544
            MR+LKYHE+KLLKKV+F +WKSDKN+REIQ+LRRY VQNRDDY KYN+I GLITK+T++LK L   D  R+K TE L++KL++MG+I+TKKSL + E    SAFCRRRLPVV+VRLK  E L EA T++EQGH+R+GP  VTDPAF VTRSMEDF+TWVD SKI+R +  Y D VDDFDLL
Sbjct:    1 MRQLKYHEEKLLKKVNFFQWKSDKNVREIQILRRYRVQNRDDYHKYNKIAGLITKLTSKLKELRQDDPTRVKTTELLIDKLYNMGLISTKKSLLQCEKIPTSAFCRRRLPVVLVRLKFCENLKEAVTFVEQGHIRIGPEVVTDPAFHVTRSMEDFITWVDSSKIRRKVMKYNDAVDDFDLL 181
[Close]
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A8IEP3_CHLRE (Small nucleolar ribonucleoprotein U3 component n=4 Tax=Chlamydomonadales TaxID=3042 RepID=A8IEP3_CHLRE)

HSP 1 Score: 256 bits (654), Expect = 9.350e-81
Identity = 125/181 (69.06%), Postives = 153/181 (84.53%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 544
            MR+LK+HEQKLLKKVDFL WKSD N+RE+QV+RRY +Q+RDDY KYN+I G++TK+T+ LK LDA D  R+++T+QLLEKL +MGII TKKSL + +    ++FCRRRL VVMVRLKM+ETL EAAT+IEQGHVRVGP  VTDPAF VTR+MEDFVTWVD SK+KR +  Y DK+DD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVDFLRWKSDDNVRELQVMRRYHIQDRDDYKKYNKISGMVTKLTSMLKQLDAKDPARVELTDQLLEKLHAMGIIPTKKSLVQCDKLPTASFCRRRLAVVMVRLKMAETLREAATFIEQGHVRVGPDTVTDPAFHVTRNMEDFVTWVDTSKVKRKVLKYNDKLDDYDLL 181
[Close]
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: E1ZQC4_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQC4_CHLVA)

HSP 1 Score: 255 bits (652), Expect = 1.930e-80
Identity = 123/181 (67.96%), Postives = 152/181 (83.98%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLL 544
            MRKLK+HE KLL+KVDFL+WK++ N RE+QV+RRY +Q+RDDY KYN++ G++TK+ A LK LDA D  RI++T+QLL+KL +MG+I TKKSL + E  S ++FCRRRL V+MVRLKMSETL EA T+IEQGHVRVGP  VTDPAFLVTRSMEDFVTWVD SKIKR +  Y DK+DDFD++
Sbjct:    1 MRKLKHHEHKLLRKVDFLQWKNEHNQRELQVMRRYHIQDRDDYSKYNKVCGMVTKLVATLKRLDARDSTRIELTDQLLDKLHNMGVITTKKSLVQLEKLSTASFCRRRLSVIMVRLKMSETLREACTFIEQGHVRVGPDTVTDPAFLVTRSMEDFVTWVDTSKIKRKVLRYNDKLDDFDIM 181
[Close]
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Match: A0A7S1U2R4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2R4_9STRA)

HSP 1 Score: 255 bits (651), Expect = 2.740e-80
Identity = 127/182 (69.78%), Postives = 149/182 (81.87%), Query Frame = 2 
Query:    2 MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIVGLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETASVSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTRSMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLG 547
            MRKLK+HE+KLLKKVDFLEWKSD   RE  VLRRY VQ+RDDYVKYNR+ GLITK+ A+LK L  SD FRIK +++LL KL+ +G+I+TKKSL K E  S +AFCRRRLPVVMVRLKM+ET+  AA Y+EQGHVRVGP+ VTDP FL  R+MEDFVTW D SK+KR I  Y DK+DD+DLLG
Sbjct:    1 MRKLKHHERKLLKKVDFLEWKSDGGGREAAVLRRYHVQDRDDYVKYNRLAGLITKLVAQLKKLPPSDPFRIKKSDKLLGKLYELGVIDTKKSLEKAERISAAAFCRRRLPVVMVRLKMAETVRLAAQYVEQGHVRVGPNTVTDPGFLAKRTMEDFVTWADSSKMKRHIAKYNDKLDDYDLLG 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1045.447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ94_ECTSI2.720e-11795.65Small nucleolar ribonucleoprotein U3 component n=2... [more]
A0A836CN51_9STRA8.010e-9175.00Small nucleolar ribonucleoprotein U3 component n=1... [more]
W7TBD6_9STRA4.020e-8873.63Ribosomal protein S4/S9 n=3 Tax=Monodopsidaceae Ta... [more]
A0A6S9JYI8_HETAK1.140e-8772.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8UBE0_VOLCA7.300e-8370.72Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
A0A250X5I3_9CHLO4.680e-8169.23Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
L1JBM1_GUITC6.840e-8167.96Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A8IEP3_CHLRE9.350e-8169.06Small nucleolar ribonucleoprotein U3 component n=4... [more]
E1ZQC4_CHLVA1.930e-8067.96Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S1U2R4_9STRA2.740e-8069.78Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1045contigP-lacustris_contig1045:23384..27842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score350.9
Seed ortholog evalue3.6e-94
Seed eggNOG ortholog2880.D7FQ94
Preferred nameIMP3
KEGG koko:K14560
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030532,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG0522@1,KOG4655@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons5
Model size1334
Cds size555
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.5696077-UTR-P-lacustris_contig1045:23383..233841622815315.5696077-UTR-P-lacustris_contig1045:23383..23384Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1045 23384..23384 +
1693493471.1890812-UTR-P-lacustris_contig1045:23383..233841693493471.1890812-UTR-P-lacustris_contig1045:23383..23384Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1045 23384..23384 +
1622815315.6534882-UTR-P-lacustris_contig1045:27064..278421622815315.6534882-UTR-P-lacustris_contig1045:27064..27842Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1045 27065..27842 +
1693493471.2524948-UTR-P-lacustris_contig1045:27064..278421693493471.2524948-UTR-P-lacustris_contig1045:27064..27842Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1045 27065..27842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815315.5858412-CDS-P-lacustris_contig1045:23384..234741622815315.5858412-CDS-P-lacustris_contig1045:23384..23474Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 23385..23474 +
1693493471.2018716-CDS-P-lacustris_contig1045:23384..234741693493471.2018716-CDS-P-lacustris_contig1045:23384..23474Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 23385..23474 +
1622815315.6003559-CDS-P-lacustris_contig1045:24868..249611622815315.6003559-CDS-P-lacustris_contig1045:24868..24961Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 24869..24961 +
1693493471.2117352-CDS-P-lacustris_contig1045:24868..249611693493471.2117352-CDS-P-lacustris_contig1045:24868..24961Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 24869..24961 +
1622815315.614712-CDS-P-lacustris_contig1045:25838..259721622815315.614712-CDS-P-lacustris_contig1045:25838..25972Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 25839..25972 +
1693493471.2221231-CDS-P-lacustris_contig1045:25838..259721693493471.2221231-CDS-P-lacustris_contig1045:25838..25972Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 25839..25972 +
1622815315.6278374-CDS-P-lacustris_contig1045:26531..266491622815315.6278374-CDS-P-lacustris_contig1045:26531..26649Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 26532..26649 +
1693493471.2323875-CDS-P-lacustris_contig1045:26531..266491693493471.2323875-CDS-P-lacustris_contig1045:26531..26649Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 26532..26649 +
1622815315.6405435-CDS-P-lacustris_contig1045:26944..270641622815315.6405435-CDS-P-lacustris_contig1045:26944..27064Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 26945..27064 +
1693493471.2423198-CDS-P-lacustris_contig1045:26944..270641693493471.2423198-CDS-P-lacustris_contig1045:26944..27064Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1045 26945..27064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1045.447.1prot_P-lacustris_contig1045.447.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1045 23385..27064 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1045.447.1

>prot_P-lacustris_contig1045.447.1 ID=prot_P-lacustris_contig1045.447.1|Name=mRNA_P-lacustris_contig1045.447.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=185bp
MRKLKYHEQKLLKKVDFLEWKSDKNIREIQVLRRYLVQNRDDYVKYNRIV
GLITKITARLKTLDASDEFRIKMTEQLLEKLFSMGIINTKKSLSKTETAS
VSAFCRRRLPVVMVRLKMSETLTEAATYIEQGHVRVGPHAVTDPAFLVTR
SMEDFVTWVDGSKIKRAIKTYEDKVDDFDLLGEG*
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mRNA from alignment at P-lacustris_contig1045:23384..27842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1045.447.1 ID=mRNA_P-lacustris_contig1045.447.1|Name=mRNA_P-lacustris_contig1045.447.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4459bp|location=Sequence derived from alignment at P-lacustris_contig1045:23384..27842+ (Pleurocladia lacustris SAG_25_93)
CATGAGGAAACTGAAGTACCATGAGCAGAAGCTCCTGAAGAAGGTGGACT
TCCTGGAATGGAAGAGCGACAAGAACATTCGCGAGATACAGGTGTGTGTG
ATGTTCAAATTGAAGAGATATGGCCTGGACCTGCTTTGGTGGTTGCTCTC
CGCGCGTCGAATCGTGGATCGCTTTACTTTGTGTCGGGCGCATCGCGTCG
CATCGTCAAACACGCAGCGACAGTGGGGGAGTCCTGATGTTTCTCTCGTA
AATTATGCCTCATCAAAGCTTTCAGCCTCCAACTTTTTGTTTGCGTTCCT
CGCTCAAGAGCGGTTCCTGTTGTCCTCCACTGACAACTACTTCGAGCATG
ATGCAGAATTTGACTAGTGGGTTTGGGTCTACGTATGGACGGACGCCGTC
GTGATCATGCTCATCGAGACCAATGGGGGTCACGAGAGTGGTTCTTCTGC
TACATCGTCGGGGCGAGAATTTTTTTCTCTAGGCGTTCGGTATGGTGTTC
ACGTGGCCATCTTGGCCGCGTGTTGTGCGGTGGCCTACTGCTGTACAAGC
AGAGTACTCAGTACGCATTATACACGTAAATTATAAATTATCCACACAAC
GCGAAGCTATGGGAGGGCACACTGCTGTGTTGCTGTTGTTGTTGCCTGCG
TGACGATGTGTGTATCCTGGTGTTTCGTTGTTAGGGACAGGGCGTTACAC
GTCCGCACCTAGCCACTGGAAGGTTTTGAGGTTATGTACCAACTAGCCCA
CCGGGCAGCGGCGTATCTCGGAGTCAACTCTTGACATGGTGTGATACTCT
TGAAGGGGAGTGGTATCTCATGTCACCGGTGCGATAAAGTGCATGTGGCC
GAGGCCGCAATCAGGGGTGTGATGAAAACGGGGTGGTATATCTACTGAGG
CTCCACATGGTAGCCGCTGCACTCCTTGACGGGTGTGACGAGAGGGGGGC
CGTGATAACAGACTCTGTTGTTTGATAACAGACTCTGTTGTGGGCCTCAG
CAGATCAGTTGTACGGGCCTCTGCAGCACGTGCGGCGGCAGGCACGAGTG
CTGGTGGATTCTCTCTCGTCTTGGCGACGGGATGTTTGGAAAACATGACG
TGATCGCTCTTGTAGCTGCCGACGCTGCAGACATGGCTGACGCCGTCTGA
GCCGCGTCATTTACACCTGGATTGTCTTCCTTCTCCAACTCCGTGCTGGG
AACGACTGCTCGTTTCTGCGCGTGTGATAACAGGACTTCGTGAGTTTGAT
GCGGCATGGCTTTGGGCGGTGTGATATCTTGTGCCATCTGTGCGATAGTC
GACCATTTGGGGGTCCAAAGGTACTGCTGTGGCACGGTGTGGTATTCTGG
GACATTTTTTGGGAGGTGCGGTATCTTTTGTGAGTGCGATCGCTTGTGTC
ACGTACGTACGGTAATACTCTTACCACCGCTGAAGTGTTCCTGTTCGTTT
TTTTTTGGCCGATGGTGTTTTTTTGCTGTGACCAGGTTCTTCGAAGATAT
CTGGTGCAAAACAGAGACGACTACGTCAAGTACAACAGAATCGTCGGGCT
CATCACGAAGATCACAGCCAGACTCAAGGTAAGATACCGAAAGGTACGGT
AAGGTACAGTAAAAAGTGGCACGCACATATGTTGGTTGTTGTGTGCTGCT
GTCCATCCTGCCATGTACCGTAGTCATCGGAGTCTCCGCACACTGTGCGG
TCGCCTTTTTTAATGCTTTCGTTCTCAGATTTTTATCGCACAGGGGTGCG
AAGACCCTGATATGTGCGGAGTTATCGATACCTGCGCGGAAAATGAATTA
AATTACTTGTTTCTCAGGTTTAAAGTACACCCCCGTGCGATGACCCCGAT
GTGTGCGATTCTGAACAAAACTGAGCAGCGATATGGGGTGGTTTGAACGC
ACACCCCACTTGCACATGATCAGCACCGTCGCCGTGTGCAACAGTACAGC
GTGGAGCCCAAAATACAAGCAAGCCCCCTCCTGAGTACAGGACTTTCCAA
TACAAAAACTGCTGGATGGATACCCGCATGTACGGTACCGCTCGTGGTAT
CATTGCCCAAATCGCGGGAAAAATGTCAGGGTCTCCGCACCCCTGTGCGA
AGTCAACGATACCTGTGCGATAATCGAATTAAATCACGTGGAACCCACTT
TTTTCCCGCACCTCTGTGCCAAGACTCCGATATGTGCGGAGACGCCGATA
TGTGCGGAGACCCCGATGATTACGGTATGCGCCGCCAGTTGAGAATACCA
TTGCAGCGAGAACGTCAGCAATGAAGTGCGGTATTCGGTTGGAAGCCCCC
ATTGTCGCCACCCGCCACCTCGCCCGCAAGCTTTCCTTCACGTAGACATA
GTGTCTGCGTGTTCGGCTTTGCCGCCGATCAAGCTGCTGAAACACCACAA
CCCTCGGGATGTGCTCTGCTTTTGCACTCCCTCTTCCCCGCCCCCTCGCT
GGCAGACGTTGGATGCGAGCGACGAATTCCGGATAAAGATGACAGAACAG
CTGCTGGAAAAGCTATTCTCAATGGGGATCATCAACACGAAGAAGAGCCT
GTCAAAGACGGAGACCGCCAGCGTGTCTGCCTTTTGCAGGTGACACCGCA
TCGTTTATACCCCGTACTTGCACATATTCCCGAGATGGCGAAAGTAACGC
CTCCGGCTCTGTCGTCCATTCGACCACAACGCAAGTTCTATTCCAAGACG
AGTCAAGCCAATCGACGGCAGTCCTTTCTCTGCAGCGGATGCACTGCTGT
GGCGTCAATGATGTCAATTGATATCCTCCTCGGGCTTCCCGTTTGATTGC
TGCTCTGGCAATGCCAGTTAGTCGGGCATGATGTTTGAAATATGTGCGAG
TATGTGCCGGAAAATCGAAGCCTCTTTTGTCCGACTGGACTGGGCTTGAC
AAGAGGCACGTTTTCCAAAGGACCAACAACGATCTCATCGCCATCACTCC
AGCGGCTTTACACTGTGGCTTCAAAAAATTCATGGAACAATGTAGCTGCT
GGACATATCGAGGCCTTCCACCGAACCTCGGGGACAAGTTGGGTCTCAAA
TATTTACCCAAGCAGGGTCGCAACAGTGGGTTTGGGCAGCGTCCGTGCGC
TAGTCCGATGAGCTTTCGTTGATTGCTCTGAACTTGTTTCTACTGCAGGC
GACGGTTGCCGGTGGTGATGGTAAGGTTGAAAATGTCCGAAACTCTCACT
GAGGCTGCGACGTACATCGAACAGGGGCACGTGAGGGTCGGTCCCCACGC
GGTCACGGATCCAGCGGTGAGTGAGTAGCTTTCCTTCGGAGTATGCTGGT
CCACTTGGCGACAGCGATGTCCCCTGGTTTGGAGTGGCGATATTTTACAT
GCTCAAAATTTTGCTGAAGCTGAGTTCAGGCGGCTTGTAGAGGAACCTCA
TATCCCGAGATAGCAATGGTTTCGATTGGTTTTGTTGAAATGAAAAAAAT
GTGTTGCTAATCATCCAGCCATTTTGTTTTCCTTGAATATGATCGGTCTC
ACTACTGTAACAGACAAGCGCGCCCTCTCGTGTGTGCCACATTCCTTGAC
GTTGCGAGCAGTTTCTGGTGACACGAAGTATGGAAGACTTCGTGACATGG
GTGGATGGCTCTAAGATCAAGCGCGCCATCAAGACTTACGAGGACAAAGT
GGATGATTTCGATCTGCTGGGGGAGGGATAGCGTTGGGTGGAGCCACGAT
CCCATCACCGTTGTGTTGTGCTCTTTGTGTAGTGTGATTGTCCTCAAGCT
TTTCAAGTGGTGTCCTGTTGTTGCTCGTTCTCACCCGGCGTGTGTATGGT
ACAAGTAGTGTTAGTGTTTACCAAACAGCCAGCATGTTTAGTTCAGCGAA
CGGAGAATGTCGTTAGCTCCTGTGTATCTTTGGCGTATAGGCCGCTTAAT
CGACAACAACTCGTGGCTACCAGTGATCATGGATGTTGAATCTGTGACGA
ACGTTACTTATCATTGTTGGGAACCATGCTTGGGAACCGTTCGTGGGACC
CCTTACCAAGTGTGTGCGCATCGTCACCGAGCTCGCAGCCACCTTGCGCT
GGATTTTGGATACATGTGACACTGCTGTGTGTTTTCCTCACCAGATGCGT
GACCGGATGGGGAGCATACCTGGTGATAACAAACACACCATTTTTTTCGC
GAATAGCGATCATTTGTGATGAGCGTGTATGTTGTGGATATTGGCTCTTC
TACTATTTTTCAGTTTGTCGACAATTCCTCCCCTCTGGGTCTACCGTGCT
TGGATGGCTCGTTCTCTCGGGGTCTACCACGCGCCACGCTTTCTGTCTCT
CCTTTAGGGAAGGATGCAAAGAAAGTAGGATGGGTGTTTGATCTTGAGGA
CTCGGCCTCCGCTCCCGCTGTGGCGTGCTAAGCAGTTTCTTGTTTCTGTG
TACACAAACATGTGTTAGCAGATTTCGCGATCTCGAGCAAACCGCACACT
GGTCCCGTC
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Coding sequence (CDS) from alignment at P-lacustris_contig1045:23384..27842+

>mRNA_P-lacustris_contig1045.447.1 ID=mRNA_P-lacustris_contig1045.447.1|Name=mRNA_P-lacustris_contig1045.447.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1110bp|location=Sequence derived from alignment at P-lacustris_contig1045:23384..27842+ (Pleurocladia lacustris SAG_25_93)
ATGAGGAAACTGAAGTACCATGAGCAGAAGCTCCTGAAGAAGGTGGACTT
CCTGGAATGGAAGAGCGACAAGAACATTCGCGAGATACAGATGAGGAAAC
TGAAGTACCATGAGCAGAAGCTCCTGAAGAAGGTGGACTTCCTGGAATGG
AAGAGCGACAAGAACATTCGCGAGATACAGGTTCTTCGAAGATATCTGGT
GCAAAACAGAGACGACTACGTCAAGTACAACAGAATCGTCGGGCTCATCA
CGAAGATCACAGCCAGACTCAAGGTTCTTCGAAGATATCTGGTGCAAAAC
AGAGACGACTACGTCAAGTACAACAGAATCGTCGGGCTCATCACGAAGAT
CACAGCCAGACTCAAGACGTTGGATGCGAGCGACGAATTCCGGATAAAGA
TGACAGAACAGCTGCTGGAAAAGCTATTCTCAATGGGGATCATCAACACG
AAGAAGAGCCTGTCAAAGACGGAGACCGCCAGCGTGTCTGCCTTTTGCAG
ACGTTGGATGCGAGCGACGAATTCCGGATAAAGATGACAGAACAGCTGCT
GGAAAAGCTATTCTCAATGGGGATCATCAACACGAAGAAGAGCCTGTCAA
AGACGGAGACCGCCAGCGTGTCTGCCTTTTGCAGGCGACGGTTGCCGGTG
GTGATGGTAAGGTTGAAAATGTCCGAAACTCTCACTGAGGCTGCGACGTA
CATCGAACAGGGGCACGTGAGGGTCGGTCCCCACGCGGTCACGGATCCAG
CGGCGACGGTTGCCGGTGGTGATGGTAAGGTTGAAAATGTCCGAAACTCT
CACTGAGGCTGCGACGTACATCGAACAGGGGCACGTGAGGGTCGGTCCCC
ACGCGGTCACGGATCCAGCGTTTCTGGTGACACGAAGTATGGAAGACTTC
GTGACATGGGTGGATGGCTCTAAGATCAAGCGCGCCATCAAGACTTACGA
GGACAAAGTGGATGATTTCGATCTGCTGGGGGAGGGATAGTTTCTGGTGA
CACGAAGTATGGAAGACTTCGTGACATGGGTGGATGGCTCTAAGATCAAG
CGCGCCATCAAGACTTACGAGGACAAAGTGGATGATTTCGATCTGCTGGG
GGAGGGATAG
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