prot_P-lacustris_contig1014.228.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1014.228.1
Unique Nameprot_P-lacustris_contig1014.228.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length292
Homology
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BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: D7G7Z1_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z1_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 1.760e-102
Identity = 203/281 (72.24%), Postives = 227/281 (80.78%), Query Frame = 0 
Query:   20 VTEFASAE-TAVNLSKGDALEHPVTELEAVRSILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAEAAGANAALQANGRDILGANCTVSLASSMPMLSDGLDRDDVSDQPNAPAGK----MTTAEWIKSIFARGMVYTRLFDERLGVSQTAKSIAVKVQTQVERLXXXXXXXXXXXXXXXXXXXKVQEVNTTLKVTETATKWAKTAKESTDKALESNPRVAAGVQRAGDAFETVVRSVSGLAQQALGQPK----PSGPAAPAEVP 291
            + EFA+   T +  SKG  LEHPVT+LEAVRSILVQGLPLLDQELTE+S+VQVFSAYGEISKLLLQT E SR+QRAVLVFA+ AGA +ALQANGRDILGANC+VSLASSMP L+DGLDRD+VSDQP A  G     +TTAEWIK IFA+GMVYTRLFDE+LGVS TAKSIA KVQTQV   XXXXXXXXXXXXXXXXXXX            ETA+KWA +AKESTDKALESNPRVAAGV +AGDA  ++V+SVSGLA QA+GQP+    P  P  P+ VP
Sbjct:    1 MAEFAAVPGTPMKPSKGQDLEHPVTDLEAVRSILVQGLPLLDQELTESSIVQVFSAYGEISKLLLQTNEESRTQRAVLVFADVAGATSALQANGRDILGANCSVSLASSMPALNDGLDRDNVSDQPAAVGGMEGRTLTTAEWIKGIFAQGMVYTRLFDEKLGVSSTAKSIAAKVQTQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETASKWAHSAKESTDKALESNPRVAAGVHQAGDAIGSLVKSVSGLAHQAMGQPQEMAGPVPPVPPSAVP 281
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BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: A0A6H5JE69_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE69_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 7.100e-28
Identity = 68/124 (54.84%), Postives = 92/124 (74.19%), Query Frame = 0 
Query:   42 VTELEAVRSILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAEAAGANAALQANGRDILGANCTVSLASSMPMLSDGLDRDDV----SDQPNAPAGKMTTAEWIKSIF 161
            VTE +A RS+LVQGLP+LD++ TE SLV+VFS YG +S+LLLQTI  S++QRA++VFAE+AGA AALQ N RDILGA+C+V L+S++   ++  DR ++      +     G  TTAEWI+ IF
Sbjct:  447 VTEEQAARSVLVQGLPILDRQRTECSLVEVFSVYGRVSRLLLQTIRLSQTQRALVVFAESAGATAALQQNDRDILGASCSVCLSSTLAGSNERFDRYNIHWMGESESALSGGTPTTAEWIQLIF 570
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BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Match: A0A7S1XND4_9STRA (Hypothetical protein (Fragment) n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XND4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.440e-9
Identity = 31/68 (45.59%), Postives = 51/68 (75.00%), Query Frame = 0 
Query:   50 SILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAEAAGANAALQANGRDILG 117
            S+LV+G+P+  +ELTE ++V +FS  G++ +L++QT+ G  SQRA++ + +AAGA AAL  +G  +LG
Sbjct:   53 SVLVEGIPVATRELTEDAVVTLFSTKGQLGRLIIQTVAGGASQRAIVSYTDAAGAAAALHLDGERVLG 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1014.228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7Z1_ECTSI1.760e-10272.24RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5JE69_9PHAE7.100e-2854.84Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XND4_9STRA4.440e-945.59Hypothetical protein (Fragment) n=4 Tax=Phaeomonas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 59..119
e-value: 1.8E-5
score: 24.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 49..127
score: 11.128
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 44..129
e-value: 2.6E-7
score: 32.7
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 46..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1014contigP-lacustris_contig1014:35217..40994 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1014.228.1mRNA_P-lacustris_contig1014.228.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1014 35051..42331 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1014.228.1 ID=prot_P-lacustris_contig1014.228.1|Name=mRNA_P-lacustris_contig1014.228.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=292bp
MTLTKAMSFDVVRFFCQPRVTEFASAETAVNLSKGDALEHPVTELEAVRS
ILVQGLPLLDQELTETSLVQVFSAYGEISKLLLQTIEGSRSQRAVLVFAE
AAGANAALQANGRDILGANCTVSLASSMPMLSDGLDRDDVSDQPNAPAGK
MTTAEWIKSIFARGMVYTRLFDERLGVSQTAKSIAVKVQTQVERLDEKHN
VSGKIAAVALGAQAKVQEVNTTLKVTETATKWAKTAKESTDKALESNPRV
AAGVQRAGDAFETVVRSVSGLAQQALGQPKPSGPAAPAEVP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf