prot_P-lacustris_contig101.200.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig101.200.1
Unique Nameprot_P-lacustris_contig101.200.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length287
Homology
BLAST of mRNA_P-lacustris_contig101.200.1 vs. uniprot
Match: D7G1S7_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S7_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 5.310e-43
Identity = 144/319 (45.14%), Postives = 173/319 (54.23%), Query Frame = 0
Query:    1 MLERRLDGGYQVFAPEIAQD-PRREPTRVVARTHERPRGPSLPKWDRRGNAAARRPLXXXXXXXXXXXA-WDSVDSGSTPQPWNCQACTYLNEDPAYRSACEMCSTLREWD--NSTGSGNSAKGGRVAPATAAPTSMPSFSPTASAGGAPXXXXXXXXXXX----------------------------------------IEACIPGEIAARGDGDVAGFSG----LDDTNNMAGGILGGVSPGGGAFPVASAAGRAASANGNGATAQNGHT-GIDWEAGEGWQGYGSASFGDDSPRRCSPRHA--AFGFPFGSTQGG 268
            MLERR+DGGYQ+F+PEI +D P      VVART+ERPRG SLPKWDR  +A + RP  XXXXXXX   +    + SG + QPWNC ACTYLNEDPA+R+ACE+C+T R     ++ G+G S  GG                   S G   XXXXXXXXXXX                                        IEACIP   +  G G+  G       +DD  N   GILGGVSPGGGAFPV S A +AAS +   ATA +    G  WEAG+ WQG+GS SFG +SP  CS R    AF F FG+++ G
Sbjct:    1 MLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRTDDAVSTRPAPXXXXXXXRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSAAADAVGTGTSGDGGEQRH-----DDWDDSEVLKSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPPPQIEACIPSGFSV-GGGEAGGLPXXXXXVDD--NEVDGILGGVSPGGGAFPVVSGAYQAASGHCGSATAASAAALGGGWEAGDEWQGFGSGSFGQESPVNCSSRQPTKAFEFAFGNSEAG 311          
BLAST of mRNA_P-lacustris_contig101.200.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 6.770e-40
Identity = 129/320 (40.31%), Postives = 156/320 (48.75%), Query Frame = 0
Query:    1 MLERRLDGGYQVFAPEIAQD-PRREPTRVVARTHERPRGPSLPKWDRRGNAAARRPLXXXXXXXXXXXAWDSVDSGSTPQPWNCQACTYLNEDPAYRSACEMCSTLRE------------------------------WDNSTGSGNSAKGGRVAPATAAPTSMPSFSPTASAGGAPXXXXXXXXXXXIEACIPGEIAARGDGDVAGF--SGLDDTNNMAGGILGGVSPGGGAFPVASAAGRAASANGNGATAQNGHT-GIDWEAGEGWQGYGSASFGDDSPRRCSPRHAAFGFPFG---STQGGCGXXXXXXXEDDGNG 283
            MLERR+DGGYQ+F+PEI +D P      VVART+ERPRG SLPKWDR  +A + RPL               V SG + QPWNC ACTYLNEDPA+R+ACE+C+T R                                                                      XXXXXXX    IEACIP   +  G G+  G    G++  +N   GILGG+SPGGGAFPV S+  +A S +   ATA +    G  WEAG+ WQG+GS SFG +SP +CSPR  A  F F    S  GG G        +DG G
Sbjct:  819 MLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRSDDAVSTRPLPPPPPRPASKLGL--VGSGFSHQPWNCPACTYLNEDPAFRAACEICNTPRPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPQIEACIPSGFSV-GGGEAGGLPVGGIEVEDNEVDGILGGISPGGGAFPVVSSTDQAESRHCGSATAASAAALGGSWEAGDEWQGFGSGSFGQESPVKCSPRQPATAFEFSFRNSEAGGGGVDDGAGDGNDGRG 1135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig101.200.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1S7_ECTSI5.310e-4345.14RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBW0_9PHAE6.770e-4040.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.20.28.140coord: 74..120
e-value: 6.5E-6
score: 27.8
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 77..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig101contigP-lacustris_contig101:217307..218877 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig101.200.1mRNA_P-lacustris_contig101.200.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig101 217307..218877 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig101.200.1 ID=prot_P-lacustris_contig101.200.1|Name=mRNA_P-lacustris_contig101.200.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=287bp
MLERRLDGGYQVFAPEIAQDPRREPTRVVARTHERPRGPSLPKWDRRGNA
AARRPLPPPPPRPPPPPAWDSVDSGSTPQPWNCQACTYLNEDPAYRSACE
MCSTLREWDNSTGSGNSAKGGRVAPATAAPTSMPSFSPTASAGGAPFSPV
AGAATPPIEACIPGEIAARGDGDVAGFSGLDDTNNMAGGILGGVSPGGGA
FPVASAAGRAASANGNGATAQNGHTGIDWEAGEGWQGYGSASFGDDSPRR
CSPRHAAFGFPFGSTQGGCGGGGGAGGEDDGNGSYG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf