prot_P-lacustris_contig1009.173.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1009.173.1
Unique Nameprot_P-lacustris_contig1009.173.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length256
Homology
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BLAST of mRNA_P-lacustris_contig1009.173.1 vs. uniprot
Match: D7FV38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 1.380e-110
Identity = 176/253 (69.57%), Postives = 191/253 (75.49%), Query Frame = 0 
Query:    3 RGMDTGVGSWVVLVLLLVSSSVVLGLQWNEDCDGGLRTWLLIAVCVTAFCSVLGAIFHGKGTDGTRPSRFIDD--GWGVDDDSVNVXXXXXXXXXXXXXXXXXXXXXXLGSKGRIDGSGSTGVTPPFNLEEGRGGGRDGEGRQRRSGRTGEERRDSMGDESIISAVPSSISYRLAAQSSSLQRRYFGPGPKVFPDTIFFVLVVSQWFLAAWSVVGAVLYFRLFAGDRTCSPLLRHWTLLVVIIGFLSCLLAVC 253
            RGMDTGVGSW  LVLLLVSSSVVLGLQWN++CDGGLRTWLL  VCVTA CS LGAIFHG+G +GTRPSRF+DD   WGVDDDS+NV                          G+        +TPPF +EEG  GG  G+G        GEERRDSMGDESI+S VPS+IS+RLAAQSSSLQ RYFGPGPKVFPDTIFF+LVVSQWFLA WSVVGA LYFRLF G+RTCSPLLRHWTLLVVIIGFLSCLLAVC
Sbjct:    4 RGMDTGVGSWAALVLLLVSSSVVLGLQWNKECDGGLRTWLLTTVCVTAICSGLGAIFHGRG-NGTRPSRFLDDDDAWGVDDDSINVSVSSAAGGTGGRASPPEMGPEDANGNGKRS---DIRITPPFKMEEG--GGSGGKGVNGGGMAGGEERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVC 250
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BLAST of mRNA_P-lacustris_contig1009.173.1 vs. uniprot
Match: A0A6H5K0Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.140e-73
Identity = 134/205 (65.37%), Postives = 152/205 (74.15%), Query Frame = 0 
Query:   54 VLGAIFHGKGTDGTRPSRFIDD-GWGVDDDSVNVXXXXXXXXXXXXXXXXXXXXXXLGSKGRIDGSGST-GVTPPFNLEEGRGGGRDGEGRQRRSGRT---GEERRDSMGDESIISAVPSSISYRLAAQSSSLQRRYFGPGPKVFPDTIFFVLVVSQWFLAAWSVVGAVLYFRLFAGDRTCSPLLRHWTLLVVIIGFLSCLLAVC 253
            +LGA FHG+G DGTRPSRF+DD  WGVDDDS+NV                      +G +   +G+GS   +TPPF +EEG      G+G +R +G     GEERRDSMGDESI+S VPS+IS+RLAAQSSSLQ RYFGPGPKVFPDTIFF+LVVSQWFLA WSVVGA LYFRLF G+R CSPLLRHWTLLVVIIGFLSCLLAVC
Sbjct:    1 MLGATFHGRG-DGTRPSRFLDDDAWGVDDDSINVSVSSAAGGTGGRASPPE-----MGPE-HTNGNGSDIRITPPFKMEEG-----GGDGGKRVNGXXMAGGEERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVC 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1009.173.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV38_ECTSI1.380e-11069.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0Y0_9PHAE1.140e-7365.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 255..255
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 197..220
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 62..196
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 232..254
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 221..231
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..27
score: 0.801
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 198..220
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
NoneNo IPR availableTMHMMTMhelixcoord: 235..254

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1009contigP-lacustris_contig1009:35714..40903 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1009.173.1mRNA_P-lacustris_contig1009.173.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1009 35257..40903 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1009.173.1 ID=prot_P-lacustris_contig1009.173.1|Name=mRNA_P-lacustris_contig1009.173.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=256bp
MARGMDTGVGSWVVLVLLLVSSSVVLGLQWNEDCDGGLRTWLLIAVCVTA
FCSVLGAIFHGKGTDGTRPSRFIDDGWGVDDDSVNVSVSSAAGGEGDGGK
SSPAIGVGLGSKGRIDGSGSTGVTPPFNLEEGRGGGRDGEGRQRRSGRTG
EERRDSMGDESIISAVPSSISYRLAAQSSSLQRRYFGPGPKVFPDTIFFV
LVVSQWFLAAWSVVGAVLYFRLFAGDRTCSPLLRHWTLLVVIIGFLSCLL
AVCCE*
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