mRNA_P-lacustris_contig1009.173.1 (mRNA) Pleurocladia lacustris SAG_25_93
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1009.173.1 vs. uniprot
Match: D7FV38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI) HSP 1 Score: 329 bits (843), Expect = 3.070e-109 Identity = 176/253 (69.57%), Postives = 191/253 (75.49%), Query Frame = 2 Query: 287 RGMDTGVGSWVVLVLLLVSSSVVLGLQWNEDCDGGLRTWLLIAVCVTAFCSVLGAIFHGKGTDGTRPSRFIDD--GWGVDDDSVNVXXXXXXXXXXXXXXXXXXXXXXLGSKGRIDGSGSTGVTPPFNLEEGRGGGRDGEGRQRRSGRTGEERRDSMGDESIISAVPSSISYRLAAQSSSLQRRYFGPGPKVFPDTIFFVLVVSQWFLAAWSVVGAVLYFRLFAGDRTCSPLLRHWTLLVVIIGFLSCLLAVC 1039
RGMDTGVGSW LVLLLVSSSVVLGLQWN++CDGGLRTWLL VCVTA CS LGAIFHG+G +GTRPSRF+DD WGVDDDS+NV G+ +TPPF +EEG GG G+G GEERRDSMGDESI+S VPS+IS+RLAAQSSSLQ RYFGPGPKVFPDTIFF+LVVSQWFLA WSVVGA LYFRLF G+RTCSPLLRHWTLLVVIIGFLSCLLAVC
Sbjct: 4 RGMDTGVGSWAALVLLLVSSSVVLGLQWNKECDGGLRTWLLTTVCVTAICSGLGAIFHGRG-NGTRPSRFLDDDDAWGVDDDSINVSVSSAAGGTGGRASPPEMGPEDANGNGKRS---DIRITPPFKMEEG--GGSGGKGVNGGGMAGGEERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVC 250
BLAST of mRNA_P-lacustris_contig1009.173.1 vs. uniprot
Match: A0A6H5K0Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE) HSP 1 Score: 233 bits (595), Expect = 2.680e-72 Identity = 134/205 (65.37%), Postives = 152/205 (74.15%), Query Frame = 2 Query: 440 VLGAIFHGKGTDGTRPSRFIDD-GWGVDDDSVNVXXXXXXXXXXXXXXXXXXXXXXLGSKGRIDGSGST-GVTPPFNLEEGRGGGRDGEGRQRRSGRT---GEERRDSMGDESIISAVPSSISYRLAAQSSSLQRRYFGPGPKVFPDTIFFVLVVSQWFLAAWSVVGAVLYFRLFAGDRTCSPLLRHWTLLVVIIGFLSCLLAVC 1039
+LGA FHG+G DGTRPSRF+DD WGVDDDS+NV +G + +G+GS +TPPF +EEG G+G +R +G GEERRDSMGDESI+S VPS+IS+RLAAQSSSLQ RYFGPGPKVFPDTIFF+LVVSQWFLA WSVVGA LYFRLF G+R CSPLLRHWTLLVVIIGFLSCLLAVC
Sbjct: 1 MLGATFHGRG-DGTRPSRFLDDDAWGVDDDSINVSVSSAAGGTGGRASPPE-----MGPE-HTNGNGSDIRITPPFKMEEG-----GGDGGKRVNGXXMAGGEERRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVC 193 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1009.173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1009.173.1 >prot_P-lacustris_contig1009.173.1 ID=prot_P-lacustris_contig1009.173.1|Name=mRNA_P-lacustris_contig1009.173.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=256bp MARGMDTGVGSWVVLVLLLVSSSVVLGLQWNEDCDGGLRTWLLIAVCVTAback to top mRNA from alignment at P-lacustris_contig1009:35257..40903+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1009.173.1 ID=mRNA_P-lacustris_contig1009.173.1|Name=mRNA_P-lacustris_contig1009.173.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5647bp|location=Sequence derived from alignment at P-lacustris_contig1009:35257..40903+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1009:35257..40903+ >mRNA_P-lacustris_contig1009.173.1 ID=mRNA_P-lacustris_contig1009.173.1|Name=mRNA_P-lacustris_contig1009.173.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1536bp|location=Sequence derived from alignment at P-lacustris_contig1009:35257..40903+ (Pleurocladia lacustris SAG_25_93)back to top |