mRNA_P-lacustris_contig996.16253.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig996.16253.1
Unique NamemRNA_P-lacustris_contig996.16253.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig996.16253.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 2.460e-64
Identity = 94/118 (79.66%), Postives = 102/118 (86.44%), Query Frame = 1 
Query:   28 MDEDGMFLMLKMCNSCSLNKGSWKKCMSRRHNPRMSTVWEGELTNGHRQCVKPDQAITIYKLRDHDTNEEYLEFDEKIIFQTPCHNCLNIRSCLSSGHKLVDWRPSFARSRVADSARP 381
            MD+DG+FLMLKMCN CS NKGSWKKCMSRRHNPRMSTV E ELT  HRQCVKPDQAITIYKL DH+TNE+YLEFDEKIIFQT C  CLNI+SCL  GHKL+DWRP+FA  RVA S+ P
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRPTFAGGRVAGSSHP 118
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BLAST of mRNA_P-lacustris_contig996.16253.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.910e-48
Identity = 80/97 (82.47%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:   28 MDEDGMFLMLKMCNSCSLNKGSWKKCMSRRHNPRMSTVWEGELTNGHRQCVKPDQAITIYKLRDHDTNEEYLEFDEKIIFQTPCHNCLNIRSCLSSG 318
            MD+DG+FLMLKMCN CS NKGSWKKCMSRRHNPRMSTV E ELTN HRQCVKPDQAITIYKL DH+TNE+YLEFDE+IIFQT C  CLNI+SCL  G
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLG 97
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BLAST of mRNA_P-lacustris_contig996.16253.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.360e-29
Identity = 52/117 (44.44%), Postives = 77/117 (65.81%), Query Frame = 1 
Query:   28 MDEDGMFLMLKMCNSCSLNKGSWKKCMSRRHNPRMSTVWEGELTNGHRQCVKPDQAITIYKLRDHDTNEEYLEFDEKIIFQTPCHNCLNIRSCLSSGHKLVDWRPSFARSRVADSAR 378
            MD DG  L++  CN+C +NK   + C+ R+HN R++ V   EL   HRQCVKPDQ +TI+KL D +T EE +E+   +IFQ PC +C+++++C+  GH+L DW P   R R + + R
Sbjct:    1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRASQNKR 117
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig996.16253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0U1_ECTSI2.460e-6479.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LER2_9PHAE1.910e-4882.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T9_ECTSI1.360e-2944.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig996contigP-lacustris_contig996:60815..65008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size629
Cds size600
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig996.16253.1prot_P-lacustris_contig996.16253.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig996 60815..64981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817427.8654013-CDS-P-lacustris_contig996:60814..611301622817427.8654013-CDS-P-lacustris_contig996:60814..61130Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 60815..61130 -
1693495060.6600668-CDS-P-lacustris_contig996:60814..611301693495060.6600668-CDS-P-lacustris_contig996:60814..61130Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 60815..61130 -
1622817427.8808882-CDS-P-lacustris_contig996:61565..616841622817427.8808882-CDS-P-lacustris_contig996:61565..61684Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 61566..61684 -
1693495060.6687977-CDS-P-lacustris_contig996:61565..616841693495060.6687977-CDS-P-lacustris_contig996:61565..61684Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 61566..61684 -
1622817427.8960176-CDS-P-lacustris_contig996:62092..621971622817427.8960176-CDS-P-lacustris_contig996:62092..62197Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 62093..62197 -
1693495060.6769793-CDS-P-lacustris_contig996:62092..621971693495060.6769793-CDS-P-lacustris_contig996:62092..62197Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 62093..62197 -
1622817427.9104033-CDS-P-lacustris_contig996:64921..649811622817427.9104033-CDS-P-lacustris_contig996:64921..64981Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 64922..64981 -
1693495060.6866934-CDS-P-lacustris_contig996:64921..649811693495060.6866934-CDS-P-lacustris_contig996:64921..64981Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 64922..64981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817427.9250379-UTR-P-lacustris_contig996:64981..650081622817427.9250379-UTR-P-lacustris_contig996:64981..65008Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig996 64982..65008 -
1693495060.7007968-UTR-P-lacustris_contig996:64981..650081693495060.7007968-UTR-P-lacustris_contig996:64981..65008Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig996 64982..65008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig996.16253.1

>prot_P-lacustris_contig996.16253.1 ID=prot_P-lacustris_contig996.16253.1|Name=mRNA_P-lacustris_contig996.16253.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=200bp
MDEDGMFLMLKMCNSCSLNKGSWKKCMSRRHNPRMSTVWEGELTNGHRQC
VKPDQAITIYKLRDHDTNEEYLEFDEKIIFQTPCHNCLNIRSCLSSGHKL
VDWRPSFARSRVADSARPNQPPAAASPEDTPPSPPPPPTLSAPPTPAVAG
SGGAKKGRGGGTPSRTKKTRGRSSAAAEAVAEEGLDEHDRGGGGRKVSSA
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mRNA from alignment at P-lacustris_contig996:60815..65008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig996.16253.1 ID=mRNA_P-lacustris_contig996.16253.1|Name=mRNA_P-lacustris_contig996.16253.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4194bp|location=Sequence derived from alignment at P-lacustris_contig996:60815..65008- (Pleurocladia lacustris SAG_25_93)
ACGCACCACTTTAGCCAGACGAGAAGCATGGACGAAGATGGCATGTTCCT
CATGCTCAAGATGTGCAATAGCTGCAGCCTCAACAAGGTGTGAGACTCGC
TCCGACAACCCAAATCGATCTCTCTGACTTGTCCGTCGGCAATAATAGTC
CAAAATACGGCTGGACGAGGGCACCACCGCACACGCGCCGGCACCCTGTT
GTACAAGGTAGCAGCAGGGCCTCAGCTTGTCGTTCTGTAAAGCGTTGACT
GCGAACTCGTGTCGGTGGTTACCCCCGTTGTGGAAGAGTCGCATGCTCTC
AACACGCACACCCTACTCGAGAGAAAAACAACACATCCGGAGGGGCGATA
ATCGGGCACGAAGAGTTTGACGGGGCAACGATCTCCCGTATGCTGTTGTC
TCGCTGGCTCCCTCGTAGACACCTTACTCCCACGCACGCAGGCCACACCT
TGTCGTATTGCGAAGAATATGGCAGCCATCAGTACCGCAGCTTTTCCTTA
TTGGCGCAGGCTGCCGCGGGAACGAACAAACTACTACGTAGATGTAGCAC
CGGCGCCATGCCCAGTTCTTACGCCGGCGCCGGTTTTTTGTGCCCGATTG
TGGTTGACGTCGTCTTGTGCCTTCCGCTCTCCTCTGCTCGACAGCAGTAG
CGACAAGATACAGCTAGCGAAGGGAGGGCGAATCAGTGTTGTGTTCTCCT
CTCTCACTCTCTGTCTTATCTATAGAAGTCGATGGGAGGTTTCATGCGTC
GACACGGGTCTTGGTCACCGTCTCTCTCGAATACGTCCAACATCGGCCAA
GGAAATCTGTCTCTAGCGAAAACGCCGGTCGTGACCCGCGTAAGTTTTTC
TCCCTCTGTGTTCACACACACTCACCCCGTTGATTTTGTTCCCGTGAAAT
TGCTTTTCTAGACAGTCAGACTTCTTGTCGAGACGTTGGTATTGACTGCC
CTGAGGCGGCACCTCGCACTCGACTCGCTGCTACCCCGCGTAGACGCGAA
CGAGACATGGGGGCGAGATGCCCGCGAAGCCGCATCTAGAATTTTAGAGT
CCAAAACGGTTTCATGTCTTTTTGCGCATGCGAGAGAAGTACATGTAGTG
TACAAGTCATCGTTATCATTGTGTGCGGCGCACTGTGGTTTAATTTTGTC
GTAATCACAAGCATGTAACCGCAGCATCGGGTTGCTTGCGCCTGACAACA
AGCTGGCCCATGACACCAGATGCGTGTTTGAGGCGGCGCGCGTGGTGCAC
ACATCACGTTTTTGAAATCGAGGCAAGGACAAACATTGCCAGCATAAAGT
TCAGCACAGCAATGCTACCGCCATAATGCTACCGCCATAATTTCGAGGGG
AAGCTTCCGTGTTATCAAAGATAGAAGGTCGCTAAACTTGACTTGATTTG
ACGAACGTTGGATGTCCTTCATTTTCGAAAAGAGGCGTTGCAACTCAACT
ACGGTCCGTCCGTGACAAGCCTGATTTGCAGCGGCCTCATATCAAGCGGT
CTTGGGTCCCCGATACTTTCGAGATTGGGCCATTGGTGTGATAGCCCCCC
GCCCCCGCGATGGTATCATATGATACTGAACTTGCTATGCTGTAAACCAC
CCATTACAGCAGTAGTGGTTCCTCGATTTCGAAGAAGAGATGTACCCGCA
CTATAAGTGCCGCGGCCTGAAAAAACGACTCACCCGCTGGGGGGAAACTG
GAGATTACGGCAAACCAAAACAACGCAAGGATAGTGATGATTAATTAAAC
ACGTGATACCTGTTTGGAATCTTGTTCGGTTGTGACTGGCAAGGCATGTT
TTAAGCCAGACCGAATACGGGGAAGGGGGGGAGTGGGCAAAAACGTGAGA
AAGACATCGTCGCGTGATGCCAACGCCGACGCATGTGTGAGCCAATCGAT
CCATACATTTGAAAATTATTTGAAAATTATAATGTACGACCATGAAGGAG
AGGCCGCCCGCTTCGAGAAAGGATGTGCGTCATTGCGTGCAGGAGCACCG
GCCGCCTCATCGGAAATCTCTCAAGGGACTGAGATTTTTTTCAGAGGTGG
TGAGAAAGTGTCGAACCTCGCCGCGCATCAATAAAAACGTGCCACACACA
GAATCCCACCTACTAGGCTTGTGCCCGGCCTTCTCCTATGACAAAAAAAG
TCAGGCTGATGAATCTGGTTCGTGGTTTCGTGTGAAGAGGATCGATACTG
CAGATGAACGGTGCTTTTTTTTTGTCGTCTTGAAAGCGTAATGCTCCAGA
TATTGCTGAGCACGGAGTCAGTCGTCTTGTTGTGCTCCATTCCTGTCTCC
AGGGACCAATTTCGCTCTAAAACACGAGACGCGAAACACGCAAGTACAAG
TATGACGGAAGACAGACGAAGAAGCTGGGCCACTGGTTGACATGTACATA
TAAAATGTAAACATCAACGAGACCCGACCTTGCACGAAACTTCTACATCA
GGTGTACAAGCGTTGCGTGTGAGCACGTTGTAGCGGAGTTAAACGGCAGC
GGTAGCAGCCGCTGACCAAGCATCGTAAAAGTAAAGCAGAACGCCGGCTG
GAATAGGCTCTTCTGTTGACCTCTCGATGTCCGCATCACACATGTGGTTG
TTGCCCTACTGAGGTCAAGCGTTGGAGCCTGCGTCGGACGCCTAGACCGA
GCGGGTCGAATGTTGATGGACGGGCCTGACGTACGCCTTTTTTTCTATCG
CCTGTCTTTCTCCTGATTGTTTTTTTGTTCTCCTCTGCCCTCTGCCCTCG
ACAACGAATTTGTTTTTGTTTTTCTCTACTCTTGACAACGGTGGCGTTGG
CATCCACCCAGGGGAGCTGGAAAAAGTGCATGTCTAGGAGGCACAACCCA
AGGATGTCCACTGTCTGGGAAGGCGAGCTGACGAACGGTCACCGACAATG
CGTGAAGCCCGACCAGGTACTAACCATTACCAGCAATTATCCGCTGATTG
TTAGGTAGTATCTCCTTGCGTAGACGAGGGTTTTGTTAAGCGGTGTGTTT
TTGCATGGAGCAGGGCTGCTCCTGCTCGCTATATTGTCGAGGCTTTGTTT
TGCCCCCGGGAATCGGCTCGAGGGCTCCAGCTGGGGCGTCTTTCACTCAA
GGCCCTTTCGAGTTTCCGACGACGAGAACTGGGGCCGTGCAAACTACGAC
GCCGCTTCCCGCCCGCGTCCCACCAAGCCGCCCTCGTCGCAGCGCTGCTG
CTTTTGTACGTTAACTTGGTGTTTTTCCAAGGCTGAAACGTGTAAGAATC
GCGACTGGTGGAGATACCTAGCCAGCCCCGCTCTCGTCCCGACCCGCCCC
CGTCCTCATTCTGTATGCATATAGGCCATAACCATCTACAAACTCCGCGA
CCACGACACGAACGAAGAATACCTCGAGTTCGACGAGAAGATTATCTTCC
AGACGCCGTGCCATAACTGCCTCAACATCCGGTCCTGCCTCAGGTGAAAG
ATAGACTACACACGGTCGCCCTGTTTTTCCGGGGGGGGGGTTAGTGTGTG
TTTGTGTATGACCAGCTCACATGTGCCAGGCATCGAGGTTGGGGCTATTG
GGCCGCTCTGAGAGCCAAGGCAACAATGGCTGCTTTGAGTAAGAGGAGCG
TGTCCGCTCATCGGTTCGATCAAGGAATCCTGGTCCGAAATCAAACAACC
GGTTGGAAGATGATCTCTACATGCCAGATCATCCAGGCGTCTATCCGCCG
AAGTCGGAGGATTAACTGCCTCATTTCGGTCGCTCTCGATCGTTCGGATC
GGCGACGATAGTTTTGTCGGGAATGGAGCCAGACGACCATCGCTCTCCCC
GCATATCCTGTTTTTTGAACCTCCCTCTCTCGCTCGCTCTCGTTCTGTCG
ATTCTCGCTTCTTTTCTTTTTTTTGCAGTTCCGGGCACAAGCTCGTTGAC
TGGCGGCCCTCTTTCGCCCGTAGCAGGGTGGCCGACTCGGCGAGGCCCAA
CCAACCCCCCGCCGCTGCCTCGCCAGAAGACACCCCACCATCGCCGCCGC
CGCCACCGACGCTATCGGCCCCGCCGACCCCGGCTGTCGCCGGCAGCGGC
GGGGCGAAGAAGGGCAGGGGCGGCGGGACCCCGAGCCGGACCAAGAAGAC
TAGAGGGAGATCGTCGGCCGCGGCGGAGGCGGTGGCGGAGGAGGGACTAG
ACGAACACGATCGTGGCGGTGGTGGCCGGAAGGTGTCCAGTGCA
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Coding sequence (CDS) from alignment at P-lacustris_contig996:60815..65008-

>mRNA_P-lacustris_contig996.16253.1 ID=mRNA_P-lacustris_contig996.16253.1|Name=mRNA_P-lacustris_contig996.16253.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1200bp|location=Sequence derived from alignment at P-lacustris_contig996:60815..65008- (Pleurocladia lacustris SAG_25_93)
ATGGACGAAGATGGCATGTTCCTCATGCTCAAGATGTGCAATAGCTGCAG
CCTCAACAAGATGGACGAAGATGGCATGTTCCTCATGCTCAAGATGTGCA
ATAGCTGCAGCCTCAACAAGGGGAGCTGGAAAAAGTGCATGTCTAGGAGG
CACAACCCAAGGATGTCCACTGTCTGGGAAGGCGAGCTGACGAACGGTCA
CCGACAATGCGTGAAGCCCGACCAGGGGAGCTGGAAAAAGTGCATGTCTA
GGAGGCACAACCCAAGGATGTCCACTGTCTGGGAAGGCGAGCTGACGAAC
GGTCACCGACAATGCGTGAAGCCCGACCAGGCCATAACCATCTACAAACT
CCGCGACCACGACACGAACGAAGAATACCTCGAGTTCGACGAGAAGATTA
TCTTCCAGACGCCGTGCCATAACTGCCTCAACATCCGGTCCTGCCTCAGG
CCATAACCATCTACAAACTCCGCGACCACGACACGAACGAAGAATACCTC
GAGTTCGACGAGAAGATTATCTTCCAGACGCCGTGCCATAACTGCCTCAA
CATCCGGTCCTGCCTCAGTTCCGGGCACAAGCTCGTTGACTGGCGGCCCT
CTTTCGCCCGTAGCAGGGTGGCCGACTCGGCGAGGCCCAACCAACCCCCC
GCCGCTGCCTCGCCAGAAGACACCCCACCATCGCCGCCGCCGCCACCGAC
GCTATCGGCCCCGCCGACCCCGGCTGTCGCCGGCAGCGGCGGGGCGAAGA
AGGGCAGGGGCGGCGGGACCCCGAGCCGGACCAAGAAGACTAGAGGGAGA
TCGTCGGCCGCGGCGGAGGCGGTGGCGGAGGAGGGACTAGACGAACACGA
TCGTGGCGGTGGTGGCCGGAAGGTGTCCAGTGCATTCCGGGCACAAGCTC
GTTGACTGGCGGCCCTCTTTCGCCCGTAGCAGGGTGGCCGACTCGGCGAG
GCCCAACCAACCCCCCGCCGCTGCCTCGCCAGAAGACACCCCACCATCGC
CGCCGCCGCCACCGACGCTATCGGCCCCGCCGACCCCGGCTGTCGCCGGC
AGCGGCGGGGCGAAGAAGGGCAGGGGCGGCGGGACCCCGAGCCGGACCAA
GAAGACTAGAGGGAGATCGTCGGCCGCGGCGGAGGCGGTGGCGGAGGAGG
GACTAGACGAACACGATCGTGGCGGTGGTGGCCGGAAGGTGTCCAGTGCA
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