mRNA_P-lacustris_contig995.16240.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig995.16240.1
Unique NamemRNA_P-lacustris_contig995.16240.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig995.16240.1 vs. uniprot
Match: D7FQJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ1_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 3.950e-57
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:  583 MPDLSSRMHEAKSSPEASRELMLRIRRSNVQLGDGRIKTLTTTQRDSMDEIVEATRKMPPGFNARTKQDPRYSSIKLGNPDTKNLWTTSNKMPNWYAPETYARQATPNF 909
            MPDL SRM EA SSPEA+RELMLRIRRSNVQLGDGRIKTLTT+Q DSMDEIVEAT KM PGFNARTKQDPR+SSI+LG+P  +NLWTTSN+MPNWYAPETYARQ TPNF
Sbjct:    1 MPDLRSRMREANSSPEANRELMLRIRRSNVQLGDGRIKTLTTSQHDSMDEIVEATSKMEPGFNARTKQDPRFSSIELGDPAAENLWTTSNRMPNWYAPETYARQTTPNF 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig995.16240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQJ1_ECTSI3.950e-5785.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig995contigP-lacustris_contig995:48440..52242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size912
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig995.16240.1prot_P-lacustris_contig995.16240.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig995 48440..52242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817426.7129374-CDS-P-lacustris_contig995:48439..485141622817426.7129374-CDS-P-lacustris_contig995:48439..48514Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 48440..48514 -
1693495059.8016663-CDS-P-lacustris_contig995:48439..485141693495059.8016663-CDS-P-lacustris_contig995:48439..48514Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 48440..48514 -
1622817426.7252624-CDS-P-lacustris_contig995:49525..496661622817426.7252624-CDS-P-lacustris_contig995:49525..49666Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 49526..49666 -
1693495059.8110504-CDS-P-lacustris_contig995:49525..496661693495059.8110504-CDS-P-lacustris_contig995:49525..49666Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 49526..49666 -
1622817426.7366486-CDS-P-lacustris_contig995:50310..504891622817426.7366486-CDS-P-lacustris_contig995:50310..50489Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 50311..50489 -
1693495059.8196967-CDS-P-lacustris_contig995:50310..504891693495059.8196967-CDS-P-lacustris_contig995:50310..50489Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 50311..50489 -
1622817426.7477658-CDS-P-lacustris_contig995:50956..510931622817426.7477658-CDS-P-lacustris_contig995:50956..51093Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 50957..51093 -
1693495059.828067-CDS-P-lacustris_contig995:50956..510931693495059.828067-CDS-P-lacustris_contig995:50956..51093Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 50957..51093 -
1622817426.7584734-CDS-P-lacustris_contig995:51510..516521622817426.7584734-CDS-P-lacustris_contig995:51510..51652Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 51511..51652 -
1693495059.8364496-CDS-P-lacustris_contig995:51510..516521693495059.8364496-CDS-P-lacustris_contig995:51510..51652Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 51511..51652 -
1622817426.7717986-CDS-P-lacustris_contig995:52004..522421622817426.7717986-CDS-P-lacustris_contig995:52004..52242Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 52005..52242 -
1693495059.8470135-CDS-P-lacustris_contig995:52004..522421693495059.8470135-CDS-P-lacustris_contig995:52004..52242Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 52005..52242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig995.16240.1

>prot_P-lacustris_contig995.16240.1 ID=prot_P-lacustris_contig995.16240.1|Name=mRNA_P-lacustris_contig995.16240.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=304bp
MLPTHGNRAARRRSLEPPLRPSVLAARNMEMKKRLSASSLMLGDDGPENR
DWSLSSSQQPPDAGALDSSQREKNQALKKALKKAQIVLGNDPAEWGSSNT
MPAPTDDLSCYRGRLHVDTANFIKTSSVKMGSAYPGSQHKTSMSREGLKI
PDYDASVELFRTNRSLRNRLREAGRTTRIIDPDGEGARYQSSNTMPDLSS
RMHEAKSSPEASRELMLRIRRSNVQLGDGRIKTLTTTQRDSMDEIVEATR
KMPPGFNARTKQDPRYSSIKLGNPDTKNLWTTSNKMPNWYAPETYARQAT
PNF*
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mRNA from alignment at P-lacustris_contig995:48440..52242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig995.16240.1 ID=mRNA_P-lacustris_contig995.16240.1|Name=mRNA_P-lacustris_contig995.16240.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3803bp|location=Sequence derived from alignment at P-lacustris_contig995:48440..52242- (Pleurocladia lacustris SAG_25_93)
ATGCTCCCTACTCATGGCAACCGCGCTGCTAGGAGGAGGAGTTTAGAACC
TCCACTTAGGCCAAGCGTACTCGCTGCGCGCAACATGGAGATGAAGAAAA
GGCTGTCCGCTTCGTCCTTGATGCTCGGCGATGACGGCCCCGAGAACAGA
GACTGGAGCCTATCGAGCTCGCAGCAGCCGCCAGACGCTGGAGCTCTGGA
CTCATCCCAGCGGGAAAAAAACCAAGCATTGAAAAAAGGTACCACATAGA
GCTAGTGCATGGAATTATGTAGATCGACACAAACAACAGAGTCGAGTTCA
TCATGTGCAAGCTGTCAGGCCTCGATGAGGCAAGTGTGGAGGCACTGTGT
TACGGAGTCGACAGCAGTATGTTATTCTACATGAATTTACGAGCTGGGCG
ATTTCCCCGGTGATACTCTCGCTTTGATTGGGGTGAAATGAGTTGGTCAC
ACCTCCCTCGAATCAAAAATGAAAATCACATCATCTACTGCTGAACAATA
CAAGCAAACACCACAGATGCTCATCAAATTTTGTCCCCAATCACTCCGAT
CTTCGGGGGTTGGCTGCTCATCGCTACGACTCTAATGCAGCCTTAAAAAA
GGCTCAAATCGTTCTAGGGAACGATCCAGCCGAGTGGGGGTCATCGAACA
CGATGCCGGCGCCGACGGACGATCTTTCTTGCTACCGGGGGAGGCTTCAT
GTAGACACCGCCAATTTCATCAAGACCTCTAGGTGCATGGTGTAAAATTT
AGTAAAACCGCGCGTCTCGAACGACTGCCAGGGTAGCGCGTTGTAAAACA
TCTACTAACCAAACGTGTGCTGTAACTGCTGTCGACCCAAACACCTTGGA
TATTGTTTTTGACATGCAGTCAAGGGTGCACCGGGAGGAAATACCGCCGT
CATATAAGTTCTCATCCAACGGTCCAGGAATGCACTCTCGCGGTGGGTTT
GTCTTAGATCACCTTGTGATGTGCAATGCACAGTGAAGCTGCTAAGCTGT
ACATTAGGCCTCCAAATAATATAAACCCTCGCCGTGCTTAGAACATGCCA
TGCCTCGCCAGGTATTCCACGAGGATCCCGACCCCTCTCCCCCCAACCCC
AACCCATCCCCAACGTTCAATATCATCTGCAATTCCCCTCCCACACAAGC
GTGAAAATGGGGTCGGCCTACCCGGGCTCTCAACACAAAACGTCCATGTC
AAGAGAAGGTCTGAAAATTCCAGACTACGATGCTTCGGTTGAGCTCTTCA
GGACCAACCGATCGCTTCGGAACAGGCTACGAGAAGGTGACGCGACGCCA
ATATCCCAGCTGTAATTGTAGTACAGGAGAGAAACAGAGACACCTGCATA
CTCTCGTACTGCGCCGATATCTCACGCACAATCAAACTCCAAATACTCCG
AGTACATTCTGCGTCATCGCCAATCGATGTAGGGTGTTTACCATCACGTA
CTTGGGCCACGCATGTTGCAAGAGTTTTTAGAGCGTGAAGGCAAGCAGCC
CATGGGGTGTTTGTACTCATATAGCTAAGCTTTCCGTTACCCTGGCCAGC
CGGTTCTAACCGCTTGGGGACACAAGGATTTTTTCCCCAAGATTTTCTGA
TATATCGATACCTCGTGTCTTTCATCCGCTCGCAGGTAGTATCATTAATA
GCACTATTAGGGGCTCCTTGACCATGGTACATCGTCGATATTTTCTACAG
ACCGAAGGCGAGCATGAAATGAGCTCACCCGCCACCCACCGCTGCCCTGT
CAGCGGGACGAACAACACGAATAATAGATCCCGACGGGGAGGGGGCTCGC
TATCAGAGCAGCAATACCATGCCCGATCTGAGCAGCCGGATGCATGAGGC
CAAGTCTTCGCCGGAGGCAAGCCGAGAACTGATGCTGCGAATCCGACGGT
CCAACGTACAGCTCGGGGACGGCCGGATCAAGGTTGGATATTTTTCTTCT
ATCCTTGGGCTTAATTGGTGGTACGAGGCGTTTTGGGTGGTTTTGTCTCC
CCTTTTCTTAAGCAATTGTCCTGAAATATGTTCTAGATACAAACCCGGAT
CTTACCGTAGTACTCTCGAAGCTGAGCAGAACCCTTGCAAACCCGTATCG
GAAGGGATGCGGTACAGTGTTGAAACCCTTGCAAACCCCATATCGGAAGG
GATGCGATGAAGTGTTAGTATACAAGGTGAGTCAAGTACGTCAATCAAAC
CTGGGACGGGGGGATACAATCAACTGCCCCCGATGTCTTCGTCGGGATCT
CTTTGACGCCTTCCTTTTCGTCGTGTCTACACTCGATGAGATCGAAACTC
GTCGTGTCTCACCCCGCAATCCTGACCTGCGTGTGGGCACGGGGGTTAAA
CCATGCAGACTCAGTTTAAACCCATGCAGAGTCAGTTTTGTTTAGTTTTT
CTCCTTTTCGCGACTGCCATGTCCTCCGACGCGTGCTTTATTTGCGATGT
TTCCGATGTGTACCACTGTGACGATAAAAAACGTTTAAACATCAGCGTTG
GAGGGGACCATGTCCATCTCTGGAATCCCACTCGTTTTGAATCCCGTCTG
CTCCCCAACCCTGAACCTGCTTGCAGACCCTAACAACAACTCAGCGCGAC
TCGATGGACGAAATTGTCGAGGCGACGAGGAAAATGCCCCCCGGCTTCAA
CGCGAGAACCAAACAGGACCCGCGATACTCAAGCATCAAACTCGGAAATC
CCGACACGAAAAACCTGGTGGGTGTCACGACGTAGCTGGGATGCGAGCCT
TGTAGATCCTCAAAATACCGCGCAAACTCTACAAGGGGTTGCTTTCAGGG
AGACGCAAGGATCAGCCCGCAATTGATTTACTACTACTTGCTGCAAACTT
GCACCTCAAGCCGGGAAAGGCAGAAGAGATTATTATTAGGCGAGCAAATA
AGAGCGCCATTCCTGCTAGTAGTGCCTACGACGCGACAAATAGGAAACAA
CAAGAGGGTTGCTGAATCTGGCGGAAAAGGTCTTAGTGCCATTACATTAA
GATTGAACGCTCGCGCGCGCAGCAACGAGGCACGATCGGATCACTAGACA
GGATAAAATGCTGATGTTCACGTGCGTAACGCTTTCCACCCCGGAGTGCT
TCCTCTATAGTTGAGCGGGTTTGCTCTTTGCCCGCTCGACGCTCGAGGGC
ACACCACAGCTGCAGTAAAGCAAAACAAAATATGTGGGGCGTTAAATCTA
TCCCCCGCTGGCTTTCAAAACAATCCGGCAGACTTGTCGGTGAGGACCAC
GCACGTCCAAGAGCACTACTACTTTGGGTCTGGTTGCTTCATTTTGAGGA
GACGTGTCTGAAACAAGAATTGAGCCCGTCGCCAAACTCCGTGGGTATGC
TCCCCAAGCACCTGCTGACGTCGTAGTCTCACCAACTGTCGCTGTTAATC
CGGTGGTGGCGGTGCTGGAATGAACCCCAGGCACAAACACTTCTCGGGCA
ACGTTCCCCTGTCAAACAAGCCAGAGAGCAAGGCTCTTGAGACCTCTGCG
CTTGCTTGCTTCCCGACGGTTGATTAGGGGCGTGTCATTGCCTACAACGT
TGCTCGTTCTCATGTTTCTAGTCACTTTCTCGTGTGCTTTCTCCTCCTCG
CTCGTTGCAAGGACAGCAGGTGAACAACGTCCAACATTGTAGTGTCAGAG
ATATTATCTTTATTTTCGTCACCCCCGTACACACACCCCTTCCTCCCTCC
TGTCATGTGGCGTTCGCTGTTTTTGCAGTGGACGACGTCCAACAAAATGC
CTAACTGGTATGCGCCGGAAACGTACGCGAGGCAAGCTACCCCGAACTTC
TGA
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Coding sequence (CDS) from alignment at P-lacustris_contig995:48440..52242-

>mRNA_P-lacustris_contig995.16240.1 ID=mRNA_P-lacustris_contig995.16240.1|Name=mRNA_P-lacustris_contig995.16240.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1824bp|location=Sequence derived from alignment at P-lacustris_contig995:48440..52242- (Pleurocladia lacustris SAG_25_93)
ATGCTCCCTACTCATGGCAACCGCGCTGCTAGGAGGAGGAGTTTAGAACC
TCCACTTAGGCCAAGCGTACTCGCTGCGCGCAACATGGAGATGAAGAAAA
GGCTGTCCGCTTCGTCCTTGATGCTCGGCGATGACGGCCCCGAGAACAGA
GACTGGAGCCTATCGAGCTCGCAGCAGCCGCCAGACGCTGGAGCTCTGGA
CTCATCCCAGCGGGAAAAAAACCAAGCATTGAAAAAAGATGCTCCCTACT
CATGGCAACCGCGCTGCTAGGAGGAGGAGTTTAGAACCTCCACTTAGGCC
AAGCGTACTCGCTGCGCGCAACATGGAGATGAAGAAAAGGCTGTCCGCTT
CGTCCTTGATGCTCGGCGATGACGGCCCCGAGAACAGAGACTGGAGCCTA
TCGAGCTCGCAGCAGCCGCCAGACGCTGGAGCTCTGGACTCATCCCAGCG
GGAAAAAAACCAAGCATTGAAAAAAGCCTTAAAAAAGGCTCAAATCGTTC
TAGGGAACGATCCAGCCGAGTGGGGGTCATCGAACACGATGCCGGCGCCG
ACGGACGATCTTTCTTGCTACCGGGGGAGGCTTCATGTAGACACCGCCAA
TTTCATCAAGACCTCTAGCCTTAAAAAAGGCTCAAATCGTTCTAGGGAAC
GATCCAGCCGAGTGGGGGTCATCGAACACGATGCCGGCGCCGACGGACGA
TCTTTCTTGCTACCGGGGGAGGCTTCATGTAGACACCGCCAATTTCATCA
AGACCTCTAGCGTGAAAATGGGGTCGGCCTACCCGGGCTCTCAACACAAA
ACGTCCATGTCAAGAGAAGGTCTGAAAATTCCAGACTACGATGCTTCGGT
TGAGCTCTTCAGGACCAACCGATCGCTTCGGAACAGGCTACGAGAAGCGT
GAAAATGGGGTCGGCCTACCCGGGCTCTCAACACAAAACGTCCATGTCAA
GAGAAGGTCTGAAAATTCCAGACTACGATGCTTCGGTTGAGCTCTTCAGG
ACCAACCGATCGCTTCGGAACAGGCTACGAGAAGCGGGACGAACAACACG
AATAATAGATCCCGACGGGGAGGGGGCTCGCTATCAGAGCAGCAATACCA
TGCCCGATCTGAGCAGCCGGATGCATGAGGCCAAGTCTTCGCCGGAGGCA
AGCCGAGAACTGATGCTGCGAATCCGACGGTCCAACGTACAGCTCGGGGA
CGGCCGGATCAAGCGGGACGAACAACACGAATAATAGATCCCGACGGGGA
GGGGGCTCGCTATCAGAGCAGCAATACCATGCCCGATCTGAGCAGCCGGA
TGCATGAGGCCAAGTCTTCGCCGGAGGCAAGCCGAGAACTGATGCTGCGA
ATCCGACGGTCCAACGTACAGCTCGGGGACGGCCGGATCAAGACCCTAAC
AACAACTCAGCGCGACTCGATGGACGAAATTGTCGAGGCGACGAGGAAAA
TGCCCCCCGGCTTCAACGCGAGAACCAAACAGGACCCGCGATACTCAAGC
ATCAAACTCGGAAATCCCGACACGAAAAACCTGACCCTAACAACAACTCA
GCGCGACTCGATGGACGAAATTGTCGAGGCGACGAGGAAAATGCCCCCCG
GCTTCAACGCGAGAACCAAACAGGACCCGCGATACTCAAGCATCAAACTC
GGAAATCCCGACACGAAAAACCTGTGGACGACGTCCAACAAAATGCCTAA
CTGGTATGCGCCGGAAACGTACGCGAGGCAAGCTACCCCGAACTTCTGAT
GGACGACGTCCAACAAAATGCCTAACTGGTATGCGCCGGAAACGTACGCG
AGGCAAGCTACCCCGAACTTCTGA
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