mRNA_P-lacustris_contig994.16234.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig994.16234.1
Unique NamemRNA_P-lacustris_contig994.16234.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig994.16234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig994contigP-lacustris_contig994:53931..54796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size866
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig994.16234.1prot_P-lacustris_contig994.16234.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig994 54076..54546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817425.3797705-UTR-P-lacustris_contig994:53930..540751622817425.3797705-UTR-P-lacustris_contig994:53930..54075Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig994 53931..54075 +
1693495058.803448-UTR-P-lacustris_contig994:53930..540751693495058.803448-UTR-P-lacustris_contig994:53930..54075Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig994 53931..54075 +
1622817425.403241-UTR-P-lacustris_contig994:54546..547961622817425.403241-UTR-P-lacustris_contig994:54546..54796Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig994 54547..54796 +
1693495058.8199673-UTR-P-lacustris_contig994:54546..547961693495058.8199673-UTR-P-lacustris_contig994:54546..54796Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig994 54547..54796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817425.3913834-CDS-P-lacustris_contig994:54075..545461622817425.3913834-CDS-P-lacustris_contig994:54075..54546Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 54076..54546 +
1693495058.8118055-CDS-P-lacustris_contig994:54075..545461693495058.8118055-CDS-P-lacustris_contig994:54075..54546Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 54076..54546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig994.16234.1

>prot_P-lacustris_contig994.16234.1 ID=prot_P-lacustris_contig994.16234.1|Name=mRNA_P-lacustris_contig994.16234.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=157bp
MKKSRTNCSLFFFILFIHIHPIQQALQLQARELLPGNTEGFRSSDVSILP
PPISCPRPESFWKKIMFNLEEIYCSMFSNISARKCMRNQPNIFVWHQAPG
TSCHTLHTIAATHVCMCALCWCLCTGSRIGVAGGAYALHEPLSGPSRGRI
VRLIVD*
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mRNA from alignment at P-lacustris_contig994:53931..54796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig994.16234.1 ID=mRNA_P-lacustris_contig994.16234.1|Name=mRNA_P-lacustris_contig994.16234.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=866bp|location=Sequence derived from alignment at P-lacustris_contig994:53931..54796+ (Pleurocladia lacustris SAG_25_93)
GTTCCAATTTTTTTTTTCGAGGTTAAGCCCCACCCTAACTCTGTTTCACT
TTGCCTTCATTTCGGAGCATCGACCAGCGTTTGCAGAGGCTCTGTTGTGT
TGGACGTTATTGTTGTTTTTGGTAAATATTATCTCTAAAAATGTGATGAA
AAAATCAAGAACAAACTGCTCATTATTTTTTTTCATCCTTTTCATCCATA
TCCATCCCATTCAGCAAGCGCTTCAGCTCCAGGCTCGAGAATTGCTGCCG
GGAAACACAGAGGGGTTCCGAAGTTCGGATGTATCTATCCTCCCGCCTCC
TATCTCCTGTCCCCGCCCTGAGTCCTTTTGGAAGAAGATAATGTTCAATT
TGGAAGAAATATATTGTTCAATGTTCTCTAACATTTCTGCTCGGAAATGC
ATGAGGAATCAACCAAACATTTTCGTGTGGCACCAGGCACCAGGCACCAG
CTGCCACACACTCCACACTATAGCTGCCACACACGTGTGCATGTGTGCAT
TGTGCTGGTGCCTGTGCACTGGTTCCCGCATAGGGGTAGCAGGGGGTGCG
TATGCACTCCACGAACCCCTTTCAGGTCCTTCTCGAGGGAGGATTGTGCG
CCTGATTGTGGACTGAACGACGTATAGTCTTCGGCGCAGCTCATAAATTT
TTCGGCGCTTCGCGCCGATGCCGAGGAAAATTTCCACGAGCCCCGAAGCC
CCGAACCGATTTCCGCCCCTGAATACGTATGTTGTGCCAAGACAGCAGTA
GTGGAGAGACACCAGTTGTTCACAACAAAAAGGAATCCATTGCAAAAATT
ATCTTGGACGTCGTACCCCTATACAAAGATGGTTCGCTTTTTGTGCTGGG
AAATTTTTGAAAGAAA
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Coding sequence (CDS) from alignment at P-lacustris_contig994:53931..54796+

>mRNA_P-lacustris_contig994.16234.1 ID=mRNA_P-lacustris_contig994.16234.1|Name=mRNA_P-lacustris_contig994.16234.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=942bp|location=Sequence derived from alignment at P-lacustris_contig994:53931..54796+ (Pleurocladia lacustris SAG_25_93)
ATGAAAAAATCAAGAACAAACTGCTCATTATTTTTTTTCATCCTTTTCAT
CCATATCCATCCCATTCAGCAAGCGCTTCAGCTCCAGGCTCGAGAATTGC
TGCCGGGAAACACAGAGGGGTTCCGAAGTTCGGATGTATCTATCCTCCCG
CCTCCTATCTCCTGTCCCCGCCCTGAGTCCTTTTGGAAGAAGATAATGTT
CAATTTGGAAGAAATATATTGTTCAATGTTCTCTAACATTTCTGCTCGGA
AATGCATGAGGAATCAACCAAACATTTTCGTGTGGCACCAGGCACCAGGC
ACCAGCTGCCACACACTCCACACTATAGCTGCCACACACGTGTGCATGTG
TGCATTGTGCTGGTGCCTGTGCACTGGTTCCCGCATAGGGGTAGCAGGGG
GTGCGTATGCACTCCACGAACCCCTTTCAGGTCCTTCTCGAGGGAGGATT
GTGCGCCTGATTGTGGACTGAATGAAAAAATCAAGAACAAACTGCTCATT
ATTTTTTTTCATCCTTTTCATCCATATCCATCCCATTCAGCAAGCGCTTC
AGCTCCAGGCTCGAGAATTGCTGCCGGGAAACACAGAGGGGTTCCGAAGT
TCGGATGTATCTATCCTCCCGCCTCCTATCTCCTGTCCCCGCCCTGAGTC
CTTTTGGAAGAAGATAATGTTCAATTTGGAAGAAATATATTGTTCAATGT
TCTCTAACATTTCTGCTCGGAAATGCATGAGGAATCAACCAAACATTTTC
GTGTGGCACCAGGCACCAGGCACCAGCTGCCACACACTCCACACTATAGC
TGCCACACACGTGTGCATGTGTGCATTGTGCTGGTGCCTGTGCACTGGTT
CCCGCATAGGGGTAGCAGGGGGTGCGTATGCACTCCACGAACCCCTTTCA
GGTCCTTCTCGAGGGAGGATTGTGCGCCTGATTGTGGACTGA
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