mRNA_P-lacustris_contig99.16195.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig99.16195.1 vs. uniprot
Match: D8LNT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNT1_ECTSI) HSP 1 Score: 1230 bits (3183), Expect = 0.000e+0 Identity = 726/1192 (60.91%), Postives = 801/1192 (67.20%), Query Frame = 1
Query: 49 MEDFRREDGFLLRRDANFLLNSDPCLTAVGAPVVLARNYAGYASLGRRRQGRWGVGDNDETPFKMASAFLKDRHDLCVPVELLAGLIDEDSKLSNSARSWDMPDTVCSDLSWPGSCLENLSA-EPLGLASQAPPLLAHTSGPERSHLALLRPRQACFRVAPATVAAGGSNSGKGCVDGTAALYGDGAEAAXXXXXXXXVSTNASAAIELKDRLALHAGPIRQISAVASRTNAPPRVFARCDYSATLVAVCKVVDRLQHLGGYNPRDVSERRIRRAKAAAGVPLAVESAAEXXXXXXXXXXXXXXXEEVGDLDFDGFEENEKLVFSRRLTCAACSPFTPNHAAFLDEEFRLFHWHADRGAMTHGSGPLPI-GPPTALENSRAETKARRSRNADVALDYGSHPRVLWVAGRHRAYRIDLRERPSPAALTPALDPGVYYSNFNDEQIVDGGRGKLGGRGEPPKVRSLAVGRRSAHDVFVAAGLHLACMDVRFPRDVVARWDLPQEVDQLRWLPGVPGDGADNAEEVILASGRRSPGFYVNTWARDVPGWRGSQIRLGLDDTSPAASAARRPLTFSLPATVLSEGETRSGGLLLALPPERRSIAACGGGECRWFIHATSAGDVYGQRVEMRQVGGMPDGERSRNDEGHGTKAVPASPQSVLLSDRIQSMLPCGDVCLDPDAAFHHHPARQKAPTATSKQPSAVVAAGTGGVGKSEDNRRENARRXNGAKHKDSIVGGGNAISSSGANTGSGYSSGEDRVSGTKERTGDEGKGRRGGARSHGTSR-AGEDGRDGG-LESFSSEGDSDSHTPRRLDSEASRSVHGRRRRGSGSPRTDRRSRVDRGNVSESKKDDHDGSGGTGELTLSQCKARKRPREEGTPPTPTRVNTPARRRAACSNERGIELGDGNSAGVEHLPVVPRAIV-YFPLNAAALRASVEKVPDNALCGHRHLAPLVDLVASAKQKSREFGVQQKSGGSSATGVAAAVAQRRERDFGDLRDSKDHVADFLLMPRTPDELLTFCRRTLGLEFP-EDPPVSTTRRANYHDHGGEVEETPRKHSNPGGSEGRGNSKTSSSPDEGGCSSSV-----KTRPRMVDATIAVDIARAVLAWGQPFRIVETPWRAAAVGQGYSVV-SPLPSPASLPRVGTLVLCSSREVLKGDPSPFLRPGIVGDPLAVDVTVEDVRWLKDQWDGSW 3588
MED R +GF LRRDANFLLNSD CLTAVGAPVVL+RN+AGYASLGR RQGRWG+G+ E PFKMASAFLKDR D+CVPVELLAGLIDE SKL +SARSWDMPDTVCSDLSWPGSCLENLSA + LGL+S A PLLAH SGPE SHLALLRPRQAC +P+T + G NSGKGCVDGTA G EA S +ASAAIELKDRLALHAGPIRQISAVA R NA P VF RCDYSATL CKV DRL HLGGYN R V ERR+RRAK AAG+P+A +SAA XXXXXXXXX E DFDGFEE EKLVFSRRLTC ACSPFTP +AAFLDEE RLF WH++RGA+THG+GPLPI PP A E K RR+RNADVALDYGSHPRVLWVAGRHRAYR+DLRE PSPAAL PALDPGVY++ F+D IVDGG G+ GGRGE P VRSLAVGRRSAHDVFVAAGLHLACMD RFP+ VVARWDLPQEVDQLRWLPGVPG+ A+ AEE++LASGRRSPGFYVNTWARDVPGWRG Q RLGLDDTSPAASAARRPLTFSLPAT LSEGETRSGGLLL L P R +A G+ WF+HATSAGD YGQR+EMR+VGG GE G KAVPASP+S LLSDRIQSMLPCGDVCLDPDAA + P R A +S + VA G G+ R+ KD + GGN+ S SSG RR SH AGED RDGG ES P +SEA RS G+G PR R RK P G P R +G S G + P P+A V YFP+NA AL A+VEKVP+NA+CGHR+LAPLV LV++ K +S + G + + GSS G A+ A+RRERDF LRDSKD VA+FLL PRTPDELL FCRRTLGLEFP +DPPV + + RPR+ DATI VDIARAVLAWG+PFR VET WR AAVGQGYSV+ S LP P LPRV VLCS+REVLKG+PSPFLRPG VG PLAVDV+VEDVRWLKD+WD SW
Sbjct: 1 MEDIHRVEGFQLRRDANFLLNSDRCLTAVGAPVVLSRNFAGYASLGRPRQGRWGIGEKKEVPFKMASAFLKDRRDICVPVELLAGLIDEQSKLRSSARSWDMPDTVCSDLSWPGSCLENLSAGQELGLSSPAAPLLAHASGPENSHLALLRPRQACRGGSPSTPS--GRNSGKGCVDGTADPGGPDVEAGAG-------SNDASAAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYSATLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLPVAADSAAXXXXXXXXXXREGEEEES----DFDGFEEGEKLVFSRRLTCVACSPFTPKNAAFLDEELRLFSWHSERGAVTHGAGPLPIVAPPGAPERPSLAAKVRRARNADVALDYGSHPRVLWVAGRHRAYRVDLRENPSPAALAPALDPGVYFTGFSDLSIVDGGPGRFGGRGEEPSVRSLAVGRRSAHDVFVAAGLHLACMDARFPKSVVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGLAPGGRGSSAAAVGDGLWFVHATSAGDAYGQRLEMRRVGGTGSGEAG------GKKAVPASPRSALLSDRIQSMLPCGDVCLDPDAASYRRPPRPPASKKSSGAVAGGVATEVAGAGEKPPRRKVRGHDDG----KDGVATGGNS---------SNDSSGXXXXXXXXXXXXXXXXXRR----SHXXXXXAGEDCRDGGDSESSGXXXXXXXDGPEHSESEAGRS-------GTGDPR-----RXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPRKPPARHGETPRKRTRTREGRGATXXXXXXXXNRDEGGSVGGKGRPGGPKAAVEYFPVNAGALCAAVEKVPENAICGHRYLAPLVALVSTGKGESGDCGGDKSAEGSSIRGAASEAAERRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFPADDPPVRRLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGRARPRVEDATIMVDIARAVLAWGKPFRNVETAWRPAAVGQGYSVMTSRLPGP--LPRVSAPVLCSAREVLKGEPSPFLRPGSVGPPLAVDVSVEDVRWLKDEWDSSW 1142
BLAST of mRNA_P-lacustris_contig99.16195.1 vs. uniprot
Match: A0A6H5L1M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M6_9PHAE) HSP 1 Score: 1060 bits (2742), Expect = 0.000e+0 Identity = 637/1099 (57.96%), Postives = 719/1099 (65.42%), Query Frame = 1
Query: 352 MPDTVCSDLSWPGSCLENLSA-EPLGLASQAPPLLAHTSGPERSHLALLRPRQACFRVAPATVAAGGSNSGKGCVDGTAALYGDGAEAAXXXXXXXXVSTNASAAIELKDRLALHAGPIRQISAVASRTNAPPRVFARCDYSATLVAVCKVVDRLQHLGGYNPRDVSERRIRRAKAAAGVPLAVESAAEXXXXXXXXXXXXXXXEEVGDLDFDGFEENEKLVFSRRLTCAACSPFTPNHAAFLDEEFRLFHWHADRGAMTHGSGPLPIG-PPTALENSRAETKARRSRNADVALDYGSHPRVLWVAGRHRAYRIDLRERPSPAALTPALDPGVYYSNFNDEQIVDGGRGKLGGRGEPPKVRSLAVGRRSAHDVFVAAGLHLACMDVRFPRDVVARWDLPQEVDQLRWLPGVPGDGADNAEEVILASGRRSPGFYVNTWARDVPGWRGSQIRLGLDDTSPAASAARRPLTFSLPATVLSEGETRSGGLLLALPPERRSIAACGGGECRWFIHATSAGDVYGQRVEMRQVGGMPDGERSRNDEGHGTKAVPASPQSVLLSDRIQSM-----LPCGDVCLDPDAAFHHHPARQKAPTATSKQPSAVVAAGTGGVGKSEDNRRENARRXNGAKHKDSIVGGGNAIS-SSGANTGSGYSSGEDRVSGTKERTGDEGKGRRGGARSHGTSR-AGEDGRDGGLESFSSEGDSD-SHTPRRLDSEASRSVHGRRRRGSGSPRTDRRSRVDRGNVSESKKDDHDGSGGTGELTLSQCKARKRP-REEGTPPTPTRVNTPARRRAACSNERGIELGDGNSAGVEHLPVVPRAIV-YFPLNAAALRASVEKVPDNALCGHRHLAPLVDLVASAKQKSREFGVQQKSGGSSATGVAAAVAQRRERDFGDLRDSKDHVADFLLMPRTPDELLTFCRRTLGLEFPEDPPVSTTRRANYHDHGGEVEETPRKHSNPGGSEGRGNSKTSSSPDEGGCSSSV-------KTRPRMVDATIAVDIARAVLAWGQPFRIVETPWRAAAVGQGYS-VVSPLPSPASLPRVGTLVLCSSREVLKGDPSPFLRPGIVGDPLAVDVTVEDVRWLKDQWDGSW 3588
MPDTVCSDLSWPGSCLENLSA + LGL+S APPLLAH SGPE SHLALLRPRQAC +P+T + GSN+GKGC DGTA G E S +ASAAIELKDRLALHAGPIRQISAVA R NA P VF RCDYSATL CKV DRL HLGGYN R V ERR+RRAK AAG+P A ESAA E LDFDGFEE+EKLVFSRRLTC ACSPFTP +AAFLDEE RLF WH +RG + HG+GPLPI PP E KARR+RNADVALDYGSHPRVLWVAGRHRAYR+DLRE+PSPAAL PALDPGVY++ F+D +VDGG G+ GGRGE P+VRSL VGRRSAHD+FVAAGLHLACMD RFP+ VVARWDLPQEVDQLRWLPGVPG+ A+ AEE++LASGRRSPGFYVNTWARDVPGWRG Q RLGLDDTSPAASAARRPLTFSLPAT LSEGETRSGGLLL L P R +A G+ WF+HATSAGD YGQR+EMR+VGG GE G KAVPASP+S LLSDRIQS+ LPCGDVCLDPDAA +H R A VA G G + RR +G KD + GG++ + SSG++ G G SG K++ RSHG R AGED R + P +SEA S G G+G PR R R D S S + +G + E LS R P R + TP TR R A + G +G S + P P+A V YFP+NA ALRA+VEKVP+NALC HR+LAPLVDLV++ K+++ + G + + GSS G + A+RRERDF LRDSKD VA+FLL PRTPDELL FCRRTLGLEF DPP + + RPRM D TI VDIARAVLAWG+PFR VET WR AAVGQGYS + S LP P PRV + VLCS+REVLKG+PSPFLRPG VG PLAVDV+VEDVRWLKD+WD SW
Sbjct: 1 MPDTVCSDLSWPGSCLENLSAGQELGLSSLAPPLLAHASGPENSHLALLRPRQACRGRSPSTPS--GSNNGKGCADGTADPRGPDVETGAG-------SNDASAAIELKDRLALHAGPIRQISAVAPRANARPTVFVRCDYSATLATACKVKDRLDHLGGYNARGVYERRLRRAKVAAGLPAAAESAAAAPAARGGDGREG----EEEQLDFDGFEEDEKLVFSRRLTCVACSPFTPKNAAFLDEELRLFSWHPERGTVRHGAGPLPIAAPPGGPERPSLAAKARRARNADVALDYGSHPRVLWVAGRHRAYRVDLREKPSPAALAPALDPGVYFTGFSDLSVVDGGPGRFGGRGEEPRVRSLTVGRRSAHDIFVAAGLHLACMDSRFPKGVVARWDLPQEVDQLRWLPGVPGERAEEAEEIVLASGRRSPGFYVNTWARDVPGWRGYQARLGLDDTSPAASAARRPLTFSLPATPLSEGETRSGGLLLGLAPGGRGSSAAAAGDDLWFVHATSAGDAYGQRLEMRRVGGGGVGEYG------GKKAVPASPRSALLSDRIQSIHKDCRLPCGDVCLDPDAASYHRSPRPPASKXXXXXXXXXVATEVAGAG-GKPPRRNGRGNDDG---KDGVATGGDSSNESSGSDDGRG--SGRQGAPSRKDK------------RSHGGRRGAGEDRRXXXXXXXXXXXXXXXGNRPECSESEAGHSDQGS---GTGDPRWRRGHRDDGRRDSGSSEXXXNGRASSEEAALSP---RNPPLRHDETPRKRTRTRE-GRGAAPSDDGDGNNSDEGGSIEGKGGPGDPKAAVEYFPVNAGALRATVEKVPENALCSHRYLAPLVDLVSTGKEEAGKCGGDKSAEGSSIRGAGSEAAERRERDFSKLRDSKDRVAEFLLKPRTPDELLVFCRRTLGLEFLADPPARRLQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGRVRPRMEDPTIMVDIARAVLAWGKPFRNVETAWRPAAVGQGYSFMTSRLPEPT--PRVSSPVLCSAREVLKGEPSPFLRPGAVGPPLAVDVSVEDVRWLKDEWDSSW 1053 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig99.16195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig99.16195.1 >prot_P-lacustris_contig99.16195.1 ID=prot_P-lacustris_contig99.16195.1|Name=mRNA_P-lacustris_contig99.16195.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=1181bp MEDFRREDGFLLRRDANFLLNSDPCLTAVGAPVVLARNYAGYASLGRRRQback to top mRNA from alignment at P-lacustris_contig99:233170..242802+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig99.16195.1 ID=mRNA_P-lacustris_contig99.16195.1|Name=mRNA_P-lacustris_contig99.16195.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=9633bp|location=Sequence derived from alignment at P-lacustris_contig99:233170..242802+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig99:233170..242802+ >mRNA_P-lacustris_contig99.16195.1 ID=mRNA_P-lacustris_contig99.16195.1|Name=mRNA_P-lacustris_contig99.16195.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=7086bp|location=Sequence derived from alignment at P-lacustris_contig99:233170..242802+ (Pleurocladia lacustris SAG_25_93)back to top |