mRNA_P-lacustris_contig99.16190.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig99.16190.1
Unique NamemRNA_P-lacustris_contig99.16190.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig99.16190.1 vs. uniprot
Match: A0A6H5L297_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L297_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 4.470e-133
Identity = 222/360 (61.67%), Postives = 256/360 (71.11%), Query Frame = 3 
Query:  444 GAQEAFITLRPVAAGEELTLSYLPSAIEVMGTVVRRRHLWLTRGFLCRCDRCSQPQDELRQVACPECSKDGRRQPRRRRREGGCKCFEITTAAPHS---CLSR*WSLEGDEARRRPEKETVFADWWNHSGMWVCRSCGWCSNICSADSDGAPSVALQHTESILSAEVFALVMAHTVDPRRRTASSPRRHGSSEAASTNRGWSRQDDEQLLSRQHAVRRMLNTSVTFLGKRHWTTFGCAHMRLKLELISALRDDGSGAGRSTSSFSSSRTTQPEFLDWAVRELNALEQWLASALEPATSHPPAYYVFGVVCDLLEAIKGCSARGTSEGLPLLLRRVEAWVLVFADEDQQRRFSAAVTVAGL 1514
            G + AF+TLRPVAAGEELTLSYLPS IEVMGTVVRRRHLWL+RGFLC CDRCS+PQDE+RQV CPEC K+      RR   GG       +A  HS   C        GD  RRRPE E VFA+WW  S MWVC+ CGWCSNI S  SD APS +L   ESI+SAEVFALVMAHTVDPR  +AS    + + +  S +RGW    DEQL +R+ A++ +L TSV  LG+RHWTTF CA++RLKLEL +   DDG    RS S  SSS   QPEFLDWA+RELNALEQWL +AL   TSHPPAYY+F +VCDLL+A +GCSAR T  GL LLL RVEAWVLVFADEDQ+RRF+  +    L
Sbjct:  227 GVERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKNYNSPLERRSSSGGRVVGSSRSAERHSAPACRDG-GPYNGDGRRRRPEAEAVFAEWWKQSEMWVCQYCGWCSNIDSTCSDSAPSRSLHCKESIVSAEVFALVMAHTVDPRSPSASCT--NMALDGRSGSRGWPHHPDEQLQARRDAIKGILETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGQRRPRSGSPHSSSLRIQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDATRGCSARNTVGGLQLLLGRVEAWVLVFADEDQRRRFAIVLAAVDL 583
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BLAST of mRNA_P-lacustris_contig99.16190.1 vs. uniprot
Match: D8LNS6_ECTSI (Set domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS6_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 5.550e-64
Identity = 148/358 (41.34%), Postives = 164/358 (45.81%), Query Frame = 3 
Query:  444 GAQEAFITLRPVAAGEELTLSYLPSAIEVMGTVVRRRHLWLTRGFLCRCDRCSQPQDELRQVACPECSKDGRRQPRRRRREGGCKCFEITTAAPHS---CLSR*WSLEGDEARRRPEKETVFADWWNHSGMWVCRSCGWCSNICSADSDGAPSVALQHTESILSAEVFALVMAHTVDPRRRTASSPRRHGSSEAASTNRGWSRQDDEQLLSRQHAVRRMLNTSVTFLGKRHWTTFGCAHMRLKLELISALRDDGSGAGRSTSSFSSSRTTQPEFLDWAVRELNALEQWLASALEPATSHPPAYYVFGVVCDLLEAIKGCSARGTSEGLPLLLRRVEAWVLVFADEDQQRRF---SAAV 1499
            G + AF+TLRPVAAGEELTLSYLPS IEVMGTVVRRRHLWL+RGFLC CDRCS+P DE+RQV CPEC K       RR   GG       +A  HS   C       +G  ARRRPE+ETVFA+WW  S MW                                                                                                                                           PEFLDWA+RELNALEQWL +AL P TSHPPAYY+F +VCDLL+A +GCSAR T  GL LLL RVEAWV VFADEDQ+RRF   SAAV
Sbjct:  224 GVERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPHDEVRQVVCPECCKGYNSPQERRSSSGGRVVGSSRSAEGHSTPTCRDG-GPYKGGGARRRPEEETVFAEWWKQSEMW-------------------------------------------------------------------------------------------------------------------------------------------PEFLDWAMRELNALEQWLGAALGPVTSHPPAYYIFDLVCDLLDATRGCSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAV 441
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig99.16190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L297_9PHAE4.470e-13361.67SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LNS6_ECTSI5.550e-6441.34Set domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig99contigP-lacustris_contig99:186786..190066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-08_006000.1
Exons3
Model size2462
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig99.16190.1prot_P-lacustris_contig99.16190.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig99 187725..188511 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817421.4891455-UTR-P-lacustris_contig99:186785..1877241622817421.4891455-UTR-P-lacustris_contig99:186785..187724Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 186786..187724 -
1693495055.751243-UTR-P-lacustris_contig99:186785..1877241693495055.751243-UTR-P-lacustris_contig99:186785..187724Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 186786..187724 -
1622817421.5200346-UTR-P-lacustris_contig99:188511..1888831622817421.5200346-UTR-P-lacustris_contig99:188511..188883Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 188512..188883 -
1693495055.7795622-UTR-P-lacustris_contig99:188511..1888831693495055.7795622-UTR-P-lacustris_contig99:188511..188883Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 188512..188883 -
1622817421.5307944-UTR-P-lacustris_contig99:189614..1900661622817421.5307944-UTR-P-lacustris_contig99:189614..190066Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 189615..190066 -
1693495055.7898214-UTR-P-lacustris_contig99:189614..1900661693495055.7898214-UTR-P-lacustris_contig99:189614..190066Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 189615..190066 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817421.4995368-CDS-P-lacustris_contig99:187724..1877641622817421.4995368-CDS-P-lacustris_contig99:187724..187764Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 187725..187764 -
1693495055.7608788-CDS-P-lacustris_contig99:187724..1877641693495055.7608788-CDS-P-lacustris_contig99:187724..187764Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 187725..187764 -
1622817421.5097704-CDS-P-lacustris_contig99:187852..1885111622817421.5097704-CDS-P-lacustris_contig99:187852..188511Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 187853..188511 -
1693495055.7698443-CDS-P-lacustris_contig99:187852..1885111693495055.7698443-CDS-P-lacustris_contig99:187852..188511Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 187853..188511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig99.16190.1

>prot_P-lacustris_contig99.16190.1 ID=prot_P-lacustris_contig99.16190.1|Name=mRNA_P-lacustris_contig99.16190.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=233bp
MWVCRSCGWCSNICSADSDGAPSVALQHTESILSAEVFALVMAHTVDPRR
RTASSPRRHGSSEAASTNRGWSRQDDEQLLSRQHAVRRMLNTSVTFLGKR
HWTTFGCAHMRLKLELISALRDDGSGAGRSTSSFSSSRTTQPEFLDWAVR
ELNALEQWLASALEPATSHPPAYYVFGVVCDLLEAIKGCSARGTSEGLPL
LLRRVEAWVLVFADEDQQRRFSAAVTVAGLIL*
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mRNA from alignment at P-lacustris_contig99:186786..190066-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig99.16190.1 ID=mRNA_P-lacustris_contig99.16190.1|Name=mRNA_P-lacustris_contig99.16190.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3281bp|location=Sequence derived from alignment at P-lacustris_contig99:186786..190066- (Pleurocladia lacustris SAG_25_93)
AAAGCCTCGTGCATAGCTGGCCAAGGATTGTTTGCAACTGAGGATTTGGT
TGCAGGACACCGTTTGTTTACGGAAACCGCATTTCTGGTTTCCTCACCAT
CATCAGCAGCATCACCAGCCGCATCGAGCCCTCCGGCAGTTCAACACAAG
CACTGTCCCCCCTGTGTTAGGCTCGCTCCCACAGATACCGGGGGTAGCTT
GAGCAGCTGCTTCGAGGAAACACACCGCTTTGCGCTAGCCTATCTTGCGT
CCACAGCGAGCATACGAGCTCGAGTCCACGAGCTATCGTCCATGCCCCAT
TACGGCAACCGCAACGGCAGCAGCAACGATGATGGCAACGACGAGGATCA
TGCTATGATGACCCTCATTCGACGTGAAGTTGCTTTGATGAGGGAGTTTA
ATCATGAGCTGCGCATCCTGCCCACGCGCGAGCTAGAAGGAGCGGTGCAC
AGGCGAGCTCCATGTTGTTATCTTCGTTGTTGCTCGCGTTGTATCATATG
CATAGACTAATCCTCCTTGGTTCATTTGGTCACGTTGCCGGTATTTAGTG
TCTCCTTCATCTTTTTTTGTCGTCGACCTACAAGAATAATACATGTGGCA
GAGCTCTTCATGGAAGGATAGTCTACTGCAAAACAGATATTTTTAATTTT
AAAAATATACATTGTGAACATCACCGAAGACTTGTACCAAGATGTTTTTG
TTCCGGCCACGCAGAGAGACTTCCATATTTGCATGTAACAAGTGAAATAG
ATTCATTTTAACCGTCGCTCTGGGACATAAAGCACCTGCAGGGACTTCTC
AGATGGCAGTCTTCCTTTCATGTTTTTATAAAAAAATAAAATGTGACAAA
AGTATTGTAATACACTGGTACAAGTTCCACTATTTAGTAATCTGTGTTTT
CGTTGACGTTTCACATGACACATAGTACATGACGCGCAGCACGTAGCTCT
ACGAGAGCTGCCTAACCGTAGTATTTACAATATGCCAGTGTTTCCAATTA
TGACCCCGTTGGGCGGCGCAACATGAATACGATTGCACCAAGCACTTGAA
GCGAGCCGCCCGCTCGCACAGGTTTTGGGCGAACTGCATGGGGCGAGAAG
GATCGCTATATGAGTGTGGCTCCCGTTTAAACCATAGCTGCGCCGCCAAC
TGCACTCGCGTTACGCTCAACAATCGAGCGCAGGAAGCGTTCATTACCCT
ACGACCTGTTGCCGCGGGGGAGGAGTTAACCCTCAGCTACCTGCCATCTG
CAATCGAGGTCATGGGAACTGTCGTGCGCCGGCGGCACCTGTGGTTGACG
CGAGGGTTTCTGTGCCGCTGTGACCGCTGTTCGCAGCCGCAGGATGAACT
TCGGCAAGTGGCATGTCCCGAGTGCTCCAAAGATGGTAGGCGCCAGCCGC
GCAGAAGAAGACGAGAGGGGGGTTGTAAGTGCTTCGAGATCACCACAGCC
GCACCCCACTCCTGCTTGTCGCGATAGTGGTCCCTGGAAGGGGACGAAGC
TCGACGACGTCCGGAAAAGGAAACGGTATTCGCCGATTGGTGGAACCACA
GCGGGATGTGGGTTTGTCGGTCTTGTGGGTGGTGCAGCAATATATGTAGC
GCTGACAGCGACGGGGCCCCATCGGTAGCCCTGCAACATACCGAAAGCAT
TTTGAGCGCAGAGGTATTCGCGCTGGTCATGGCCCATACCGTTGATCCTC
GTAGGCGAACTGCCAGCAGTCCAAGAAGGCATGGCAGCAGTGAAGCTGCC
AGTACCAACCGAGGGTGGTCGCGGCAGGATGATGAACAGCTGCTGTCGAG
GCAGCACGCGGTGAGGAGGATGCTGAACACATCCGTGACCTTCTTAGGCA
AGCGACATTGGACGACGTTCGGTTGCGCCCACATGCGGCTAAAGCTGGAA
CTTATTTCCGCGTTGCGCGATGATGGGTCGGGGGCTGGTCGGTCGACATC
GTCCTTTTCCTCGTCACGTACAACACAGCCAGAATTCTTGGATTGGGCCG
TACGAGAGCTGAACGCTCTAGAGCAGTGGCTGGCCTCAGCCCTGGAACCG
GCCACATCGCACCCACCGGCGTACTATGTGTTCGGCGTCGTATGCGACTT
GCTCGAGGCAATAAAGGGCTGCTCCGCGCGTGGCACTAGTGAGGGACTGC
CTTTGTTGCTGAGAAGAGTCGAGGCGTGGGTTTTGGTGTTCGCGGATGAG
GATCAACAGCGAAGGTTCTCGGCGGCTGTAACAGTGGCTGGGTTAATCTT
GTAACGATGAGGCGTGGGTTTTGGTGTTCGCGGATGAGGATCAACAGCGA
AGGTTCTCGGCGGCTGTAACAGTGGCTGGGTTAATCTTGTAACGATGCTG
CACAGGACGGGTCTGCTTCTGTGAACCTCTCTCCGTCTCTCTCAGCGGTC
ACAGCCTTGCGTGATTTCTGTCGCGAACCCCATGTTGCTGTCTTCACAAC
GGTACTTGTATGTTGTGCTGTGACCGCCCAAAACTCGATGAATAGTGGTA
CCCAGCAAGGTAGGTGATAAACGTACACAGGAGAGGGACGATCGCCGTTT
TCTATAAGTTTGAGCAGCGCGAGCGAGATATGTGAGAAAGGACCACTTTA
TGTGGTGAAGGGGGATTGGAAAAAAGGGGCGCACGTTTTTCTTCGCCCTG
ACGATCATGATGATTCCGCAACCACCATTTATTCCCCCCGAAAAGAGAGA
GAGAGAGAACGCCCTATCTCCTCGCTGATGATATTTGCGGGAAACGCGTT
CGCTCTTGCCGTTTCTTTGAACGCTTGTTCGAGAGAGTATCAACAGAGAG
AAGCGAGTGGAGGAGTCATGCGAAACATGCCCTCGTTAGAGTCAGTTGAT
TCCGAGTGTGAAGTATCTCCGACACGTCCTTCACGCGATCTCCAAACTTT
TTATGTTCATGGGCAGTTAAAGAAAAAAAACAGATGATTATGAATCGCGT
TGTTTTCCCGTACACCATACGCGATGAATTACGTCGGTATTTTTACAAAC
TTTTTTGACCGCCGTGGTGGTCGGTGGCGGCTGTCCGCCAGAATACCGCC
ATTTTCGGCCTTAACTCCTGTATATATGCAGCAATTTGAAAGTCTCCCGG
ACCAGATCAACCGCGTGCTCGAATCGTCCAAAACACTTGAAGCACTACTA
TGTATGGCAGATTTGCACGGTTCATGCCGATATGTCGATTGAGTGGTCGA
TTGTTATTGGCTGACTATATTTCAGTCCAGTGGACTTCCCTCTCGCGTCT
CTCGTGTGTGCACGTGCGTCCTAGTGTTGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig99:186786..190066-

>mRNA_P-lacustris_contig99.16190.1 ID=mRNA_P-lacustris_contig99.16190.1|Name=mRNA_P-lacustris_contig99.16190.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1398bp|location=Sequence derived from alignment at P-lacustris_contig99:186786..190066- (Pleurocladia lacustris SAG_25_93)
ATGTGGGTTTGTCGGTCTTGTGGGTGGTGCAGCAATATATGTAGCGCTGA
CAGCGACGGGGCCCCATCGGTAGCCCTGCAACATACCGAAAGCATTTTGA
GCGCAGAGGTATTCGCGCTGGTCATGGCCCATACCGTTGATCCTCGTAGG
CGAACTGCCAGCAGTCCAAGAAGGCATGGCAGCAGTGAAGCTGCCAGTAC
CAACCGAGGGTGGTCGCGGCAGGATGATGAACAGCTGCTGTCGAGGCAGC
ACGCGGTGAGGAGGATGCTGAACACATCCGTGACCTTCTTAGGCAAGCGA
CATTGGACGACGTTCGGTTGCGCCCACATGCGGCTAAAGCTGGAACTTAT
TTCCGCGTTGCGCGATGATGGGTCGGGGGCTGGTCGGTCGACATCGTCCT
TTTCCTCGTCACGTACAACACAGCCAGAATTCTTGGATTGGGCCGTACGA
GAGCTGAACGCTCTAGAGCAGTGGCTGGCCTCAGCCCTGGAACCGGCCAC
ATCGCACCCACCGGCGTACTATGTGTTCGGCGTCGTATGCGACTTGCTCG
AGGCAATAAAGGGCTGCTCCGCGCGTGGCACTAGTGAGGGACTGCCTTTG
TTGCTGAGAAGAGTCGAGGCGTGGGTTTTGGTGTTCGCGGATGAGGATCA
ACAGCGAAGATGTGGGTTTGTCGGTCTTGTGGGTGGTGCAGCAATATATG
TAGCGCTGACAGCGACGGGGCCCCATCGGTAGCCCTGCAACATACCGAAA
GCATTTTGAGCGCAGAGGTATTCGCGCTGGTCATGGCCCATACCGTTGAT
CCTCGTAGGCGAACTGCCAGCAGTCCAAGAAGGCATGGCAGCAGTGAAGC
TGCCAGTACCAACCGAGGGTGGTCGCGGCAGGATGATGAACAGCTGCTGT
CGAGGCAGCACGCGGTGAGGAGGATGCTGAACACATCCGTGACCTTCTTA
GGCAAGCGACATTGGACGACGTTCGGTTGCGCCCACATGCGGCTAAAGCT
GGAACTTATTTCCGCGTTGCGCGATGATGGGTCGGGGGCTGGTCGGTCGA
CATCGTCCTTTTCCTCGTCACGTACAACACAGCCAGAATTCTTGGATTGG
GCCGTACGAGAGCTGAACGCTCTAGAGCAGTGGCTGGCCTCAGCCCTGGA
ACCGGCCACATCGCACCCACCGGCGTACTATGTGTTCGGCGTCGTATGCG
ACTTGCTCGAGGCAATAAAGGGCTGCTCCGCGCGTGGCACTAGTGAGGGA
CTGCCTTTGTTGCTGAGAAGAGTCGAGGCGTGGGTTTTGGTGTTCGCGGA
TGAGGATCAACAGCGAAGGTTCTCGGCGGCTGTAACAGTGGCTGGGTTAA
TCTTGTAAGTTCTCGGCGGCTGTAACAGTGGCTGGGTTAATCTTGTAA
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