mRNA_P-lacustris_contig99.16183.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig99.16183.1
Unique NamemRNA_P-lacustris_contig99.16183.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig99.16183.1 vs. uniprot
Match: D8LNR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR7_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 7.110e-34
Identity = 75/105 (71.43%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:   46 MRVGLATARALGFLTRRARRGRGQYTLAEPHRTPNVG-GPRTAGPRTTSSSSVAQGRMFEDFVMSRSQLGATVMLATQIRTTMCAGGRGDFSLEMEEDGDDDDGT 357
            MRVGLATARALGF+TRRARRGRG  + +  HRTPN   GP+ AGPRT SSS+ +QGRM E+FVMSRSQLGA  +LATQIR  +C+ G GDFSLE+E DGDDDDGT
Sbjct:    1 MRVGLATARALGFVTRRARRGRGPCSQSGLHRTPNAAAGPQAAGPRTASSSAASQGRMVEEFVMSRSQLGAATVLATQIRGAVCSVGGGDFSLEVEGDGDDDDGT 105
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig99.16183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNR7_ECTSI7.110e-3471.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig99contigP-lacustris_contig99:122383..127112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size2140
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig99.16183.1prot_P-lacustris_contig99.16183.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig99 124344..127067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817420.7278888-UTR-P-lacustris_contig99:122382..1240551622817420.7278888-UTR-P-lacustris_contig99:122382..124055Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 122383..124055 -
1693495055.1359627-UTR-P-lacustris_contig99:122382..1240551693495055.1359627-UTR-P-lacustris_contig99:122382..124055Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 122383..124055 -
1622817420.7424164-UTR-P-lacustris_contig99:124236..1243431622817420.7424164-UTR-P-lacustris_contig99:124236..124343Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 124237..124343 -
1693495055.1508486-UTR-P-lacustris_contig99:124236..1243431693495055.1508486-UTR-P-lacustris_contig99:124236..124343Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 124237..124343 -
1622817420.8008668-UTR-P-lacustris_contig99:127067..1271121622817420.8008668-UTR-P-lacustris_contig99:127067..127112Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 127068..127112 -
1693495055.2011533-UTR-P-lacustris_contig99:127067..1271121693495055.2011533-UTR-P-lacustris_contig99:127067..127112Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 127068..127112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817420.7559443-CDS-P-lacustris_contig99:124343..1244691622817420.7559443-CDS-P-lacustris_contig99:124343..124469Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 124344..124469 -
1693495055.1631155-CDS-P-lacustris_contig99:124343..1244691693495055.1631155-CDS-P-lacustris_contig99:124343..124469Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 124344..124469 -
1622817420.7706149-CDS-P-lacustris_contig99:126661..1267821622817420.7706149-CDS-P-lacustris_contig99:126661..126782Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 126662..126782 -
1693495055.1784215-CDS-P-lacustris_contig99:126661..1267821693495055.1784215-CDS-P-lacustris_contig99:126661..126782Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 126662..126782 -
1622817420.7884681-CDS-P-lacustris_contig99:126999..1270671622817420.7884681-CDS-P-lacustris_contig99:126999..127067Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 127000..127067 -
1693495055.1887531-CDS-P-lacustris_contig99:126999..1270671693495055.1887531-CDS-P-lacustris_contig99:126999..127067Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 127000..127067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig99.16183.1

>prot_P-lacustris_contig99.16183.1 ID=prot_P-lacustris_contig99.16183.1|Name=mRNA_P-lacustris_contig99.16183.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=105bp
MRVGLATARALGFLTRRARRGRGQYTLAEPHRTPNVGGPRTAGPRTTSSS
SVAQGRMFEDFVMSRSQLGATVMLATQIRTTMCAGGRGDFSLEMEEDGDD
DDGT*
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mRNA from alignment at P-lacustris_contig99:122383..127112-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig99.16183.1 ID=mRNA_P-lacustris_contig99.16183.1|Name=mRNA_P-lacustris_contig99.16183.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4730bp|location=Sequence derived from alignment at P-lacustris_contig99:122383..127112- (Pleurocladia lacustris SAG_25_93)
GTTTCCACCCCAGCCTACAGCGTCCACCTTTCAAACTGCTTCACCATGAG
AGTGGGATTGGCAACAGCACGAGCACTAGGATTTTTAACGAGAAGGGCAC
GGCGAGGAAGAGGGTACGTCGGGCACGGCATGCAATCTTTCGGGCAAAGG
CCATCAGCTATTTCTCTTGTGGGGACACCCCCTTTCCTCACCTTACTCCT
GCCTGCTGCCTCAACAATAAGAGCGTGTCCTGTACTGCTGCGTGTAAATT
GTTGAGATTTCGTCTTGCTGTTGTAGCTTTTGCCCCGGCATCACCTCGGA
CGGTCCCTTCTGTTATTCTCCGTCTGGCAGACAGTACACATTGGCAGAGC
CGCATCGAACACCAAATGTTGGCGGTCCTCGAACAGCAGGCCCAAGAACA
ACATCGTCGTCATCGGTAGCACAGGGACGTATGTTCGAAGATTTTGTGAT
GGTGAGTGCAGTTTCTAGCGTCGATCTTGACCTATGCAAAAAATTTCTTT
CACCGGCGTGTGAGAATATATAACGACAGCAAGAGCGGCGCACCTGTGTC
GAAACATTGTCGAGGTGTGTCGAGTATGGAGGAGCATCACACTTTCGCTG
TCTGACACACTAATCACAATTACATCCTCATGGCTTGTAGGGCGGTCCAA
GCTCATCAACCTTGGAGTTGCTGTAGTATCGTTTCAGCCGGGTTGCTTGT
TGAGCGTGATTAGTGTTTTGCAACTATCCGTGCCTGCTTGCCGTCGAGTC
ACTTGTGCGGTAGCGAACAGGCAGCAGCAGCAGCAGCAGCACATCCACAT
AGCATTTGGCGGACCCATTTCTGTTCGATAAACCACACAACAAACACACC
ATTGCACAAACACACAATTTCGAGGCCCTTTTTTCATGTCCAACTTGTGG
TGCCGTACATGTACTACCCGTAGGTTGCATAAGATATTATACAGGTGTGA
TAATATTTTCGAGTTTAAAAATCTTACAACACCACACCGGTGTGATAGTG
TGGGGGGTGTGTGATATCTCATGTCACCGGTGCGATAAAGTGCATGCACA
GAATTCCATTTGCAGGGGGTGATAACAAGGGTGTGATAGCACGGGGTGTG
GTGGGGGTGTGATAGCCACACTCGAGAGCTAAAATGCACAGGACCGCCAC
CAGAGCGTGTGATGACGGGAGGTGTGAAAATTAGGAGGTGTTAAGATAGA
GGTGTGATGTCCTCTGGAGGGTAGTGCTGCTTGGCGGTGTCCTACCCCAC
ACTCTCGCCACTCTGCTGCGTGTGATACATCTGCTGAAAATATGCTGACA
CGAAGGGGTTGTGTGTAGAATAAAATAAACAGCTTACCGGCAGCATGCTG
GGCTCTTTTTGTTGTTGTTGCCGTGTTCGCATTAAAACCTGTTCAAACGT
GTGTGCGTGCCGCGCTGATCACACCGTGTGATAAAGGGGGTCCCATGAAT
CGTAGTGCGCCCTCGTACCTCAGGGGGTGTGATATCTTATGTCACCGGTG
TGATAAGTCAGGTGTTTCGTCGGGATGGAAAAAAATAGCACACGGGTGTG
GTATTGTGTGGGTTTTGGTAGATTTTCGAGGGGGTGTGATGTCTTCGGCA
AAGTGTGATGATATCTTATCCAACGTACCTACGTTGGAAGATATCACTCT
TTCATAAGATACCATACCCCCTCCAAAAAACCGGACCATGGTGTAGCGGT
AACCTCGAAATCATCTAGCAGCAAAGTCGTGAGTTCGAATCCCCATGGGG
GAAAAATTTGCAAATTTGCGGATGAAAGCGAAAAAAGATGAAAAGCTCGT
GAGTTCCACACGTCGACACTACATAGCACAGTTGACGAGGGAAAGGGACG
GAACCCTTCTCGCGATGAAAATTAATGCACGCACCGCAGGAAAGTGGGGC
AAAAAAAGAAACAAAAATAAGAAAAAAGCCCCTGTGTTTACCCCTCCTGT
GTGACCCCGGTTGGTTCCAGTTGGACAAAAAATACCCTGAAAAAAATGTA
GTCCTCTAAATACACCGCAACTTGTAGTACACGTCTCACCTTGATCGGGG
GGACTGTCGCCAAAATGAATGGGACGAAAACACATTCACACACACACACA
CACACGCACACACGCACACACATACTTGTACCGCACAGCGACCCGGTGTT
ATTTTTTCCCATCCTGAAGAACACCGAGGTCTCTTAAATCAAGTAAAGAC
GGTGACATGAGATATCACACCCCCCGCACAATATCATACCCGGTGATACG
TTTTTTAAACTCCAAAATGTTATCACTGGGATATGGTATCATATGCAACC
TACGGTATGCTCCTTGGAAACATGGAAACATCGGGCGGACATCAAGACGT
TTCCTCCACCGGTGACTTCAATTCCCAAAACGGTGAAGCCCGTTAGAATC
CAAACCAGTTTCCTAAATTATTATCCAAATTTCCCTCTTTCTTTTTCCAC
ACAGTTGTTGTTCTGTGTCTTTGTGTCCCGTAGTGTTTTTACCACATCAT
GCTTCAGTTTTGCTGGATTCCAAGCTCTAACTGAATCGACCCTGCTAAAT
GGTCAGTTTGACGGCCATTTCCACTCCCGATCGCTATTTACATACCGACC
GCAACCCTCATGCTATTTACCGCGCTCGGCCGTTTTTCGACAGTCTCGTA
GCCAGTTAGGGGCAACCGTGATGCTCGCGACGCAAATACGCACTACCATG
TGCGCCGGCGGAAGGGGCGACTTTAGCTTGGAGATGGAAGAAGACGGAGA
CGATGACGATGGAACGTAGGTTTGTGATACAAGTGTACGTTTACTTTCTT
CTCGTAGCCTCGGCTTGTCTCGTCTCAGGGATACATGGATACCATCAAAC
TAACTGGGATGGGGTAGGATCAGGAGGTTGGGATGTGCGTTGGAGTCCTC
ATGGTAAGCCTTTTTTCAGGGATACATGGATACCATCAAACTAACTGGGA
TGGGGTAGGATCAGGAGGTTGGGATGTGCGTTGGAGTCCTCATGGTAAGC
CTTTTTCAGGGATACATGGATACCATCAAACTAACTGGGATGGGGTAGGA
TCAGGAGGTTGGGATGTGCGTTGGAGTCCTCATGGTAAGCCTTTTTTCAT
CAGCACCCGGCCGAAACAAAGCCACCCGAAGAGGAGCTTTCCTTGGAGGC
GTTGTGTGGTATATGCTTCTTCTCAACTTTCTCTGCGTGGCTGTTCGACA
ATGTTGAAGTTGCACAAGACTTGTCAAGAAGAGCAACTCCTTTGTTTCCG
CCCTCGTCATGTATTTGCCTTCGCCCACGAGCGACACGGTACATTGGGAA
TTGGGAAGCTCCGCGGAGCATAGTTGCTCCCTCCAGACGTGGGTATTCGT
AGGCGTTACCGCTGCTGTCACCGCATACAGATTTGGTATTGGTTATTCCA
GTCCTTCCGTTCGCGAGAAACAATGGCTCAAGTGACGCTGAGTCAAGCAC
ATGCCTGCAGCACGTAGTGGCATAGATATGAAAATGCCTCTACAAGGCCA
ACTGGTGCAACCTACTGCGTAGAGGGAAGTATGTTACTTGAACTCGGTTG
CCATATCTAATCATACGCAACCCACACAACACTGCAGTTGACAGCGGCAC
CGCCATCGTCTGCTTCAGATGACATCACGTCGGCCAGAGGATGCGTGTTA
CCGTCATGTTCCGTGGCACAATCAAACGAGGGAGCTCTTCCAACGGGATG
GAGTGACCTTTCGGCGAAACTAGTCGGGGGCCTAGAGTGGCGGCGACGAT
TCTCCGTATTTTGCTGATGCAAAAATATTTTCGTCGACAACTGCTATGGT
CCCTTCCGGAATCGGAGACCCGACGGGATGCGGGCAGGATTACTCTCCAG
ACCAAGGCGTTTTGATCAGAGAGGCCCGCTGTTGGTGTTTTAGGTCGATA
CGCCCGTTCTTCTTCGAGCGCCGACTAGGTTGTCTCGTATGGGCTTCCGT
TTTCCGATGTGTGTGAATGCGGCCTGAAGGGATGCGCGATGTCGTCACGG
CATTGCCGCCACACTTAAGCGAGGGCCGGAAAAAATGCGATGCCAAAAGC
GATGATTTGGTTGTCTACTCTGTGATGTTGCAATCCATTTTCGTGTTCAG
CGCCGCTTGAACGCGCAGATAATGGTTTGTCCAGCAGCCGTAGTATAGCA
TTCTCAACGCCTGCTCGTGTGTTTGCGGTACACACCGCTGGGCCTGTAAG
TCTCTGCTATAGCCTTGCATGGAGCGGTTAGCGGATGCCGTGTTTTGGCT
CTGCCGCAATGGTCCTGTGCTAGTGATGACGATCTAACCCTCTGGCACTG
GACTACTTGCAGACCGCTAAGGAGACTGTCACAATAGAAAATATGTTCCT
GTTCGTTGTTGTTTTTTTCGGGGGGAGAGGGAGATAGAGAGGGGAAAAGT
ACGCCTGTGCACATGCCGCTCTGTGTACTTTAGGTGCACTAAGCTATTGC
TCAGAGGGCAAAAGACAAACGACCGTCAAAGAACTCGAGGAATACGATTG
TTTTCTGAAGCCCATGTAGTAGGGATTTCAGTGCCTGTGGCGGCTAAAAA
ATTATTTTGAAAAAAAAAATGGCCGTATCGAATTTCTGTCGGTACACGCC
ACCTACTGCCACGCCGTCAATCTTCTGATATATTGAGAAGCAGCGGCGAG
CAAAGCGAGCCGCCATGTTTTGCACGATAGCATGAAGCATAGCTTCGAAT
TCCTATCGACATCGCGGGACTACTGTGCGG
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Coding sequence (CDS) from alignment at P-lacustris_contig99:122383..127112-

>mRNA_P-lacustris_contig99.16183.1 ID=mRNA_P-lacustris_contig99.16183.1|Name=mRNA_P-lacustris_contig99.16183.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=630bp|location=Sequence derived from alignment at P-lacustris_contig99:122383..127112- (Pleurocladia lacustris SAG_25_93)
ATGAGAGTGGGATTGGCAACAGCACGAGCACTAGGATTTTTAACGAGAAG
GGCACGGCGAGGAAGAGGATGAGAGTGGGATTGGCAACAGCACGAGCACT
AGGATTTTTAACGAGAAGGGCACGGCGAGGAAGAGGACAGTACACATTGG
CAGAGCCGCATCGAACACCAAATGTTGGCGGTCCTCGAACAGCAGGCCCA
AGAACAACATCGTCGTCATCGGTAGCACAGGGACGTATGTTCGAAGATTT
TGTGATGACAGTACACATTGGCAGAGCCGCATCGAACACCAAATGTTGGC
GGTCCTCGAACAGCAGGCCCAAGAACAACATCGTCGTCATCGGTAGCACA
GGGACGTATGTTCGAAGATTTTGTGATGTCTCGTAGCCAGTTAGGGGCAA
CCGTGATGCTCGCGACGCAAATACGCACTACCATGTGCGCCGGCGGAAGG
GGCGACTTTAGCTTGGAGATGGAAGAAGACGGAGACGATGACGATGGAAC
GTAGTCTCGTAGCCAGTTAGGGGCAACCGTGATGCTCGCGACGCAAATAC
GCACTACCATGTGCGCCGGCGGAAGGGGCGACTTTAGCTTGGAGATGGAA
GAAGACGGAGACGATGACGATGGAACGTAG
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