mRNA_P-lacustris_contig99.16178.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: D8LNR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR1_ECTSI) HSP 1 Score: 222 bits (565), Expect = 1.640e-70 Identity = 116/149 (77.85%), Postives = 132/149 (88.59%), Query Frame = 1
Query: 1 MDVSSHTVPAAFCFIAVKLTWQSVQSCTPKRSKRGKLKGQGTTQ-QQQATQGSA-DSQGVHLSTDVSFKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGLACERFL 441
M+ SS+T+PAAFCFIAV+LT+Q+ + TPKR KRGK+KG GTTQ QQQA QGSA SQGV+L TDV+FK+ IL A+K LHGEVGS AYPVDVLSWDAV+GEGRLRVPARS+VPIRAALS VGSCG+VPCAIDV EVSPFLAGLACER+L
Sbjct: 1 MEASSYTLPAAFCFIAVQLTFQATRQATPKRPKRGKVKGGGTTQRQQQAPQGSAATSQGVYLPTDVAFKTFILAAVKDLHGEVGSLAYPVDVLSWDAVSGEGRLRVPARSLVPIRAALSFVGSCGDVPCAIDVREVSPFLAGLACERYL 149
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: A0A8J6EM83_ELECQ (Uncharacterized protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EM83_ELECQ) HSP 1 Score: 67.8 bits (164), Expect = 9.140e-11 Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 190 VSFKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGLA 426
V KSLIL+ALK LHGEVG+ +YP+DVL +D LR+ + +V + +L++VG C+I V++ SPFL LA
Sbjct: 43 VQLKSLILSALKELHGEVGA-SYPLDVLKFDGKTSSAILRIKSSGLVKLWTSLTMVGQYQGQLCSIRVLQTSPFLLALA 120
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: Q07G50_XENTR (Ribonuclease P 14kDa subunit n=3 Tax=Xenopus TaxID=8353 RepID=Q07G50_XENTR) HSP 1 Score: 65.1 bits (157), Expect = 1.060e-9 Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 166 QGVHLSTDVSFKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGLA 426
+G LS FK L+++ALK LHGEVGS + P+D+LS+D LRV +R +V + ++L+L+G N C+I V++ SPFL LA
Sbjct: 43 EGAQLSA-TQFKLLVVSALKNLHGEVGS-SLPLDLLSFDEKTLCAVLRVCSRGLVKLWSSLTLLGHYKNHECSIRVIQTSPFLLALA 127
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: A0A7D9IBD1_PARCT (Ribonuclease P subunit p14 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IBD1_PARCT) HSP 1 Score: 64.7 bits (156), Expect = 1.440e-9 Identity = 34/81 (41.98%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 190 VSFKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGLACE 432
V KSLI+ ALK LHG VG+ A VDVL + +GE LRV + ++ +R++L+++ + PC +V +VSP+L LA +
Sbjct: 36 VKLKSLIVNALKQLHGLVGA-AITVDVLKCEKTSGEIILRVKSSDLIKLRSSLTILNNYNGTPCRCNVKQVSPYLMSLAAD 115
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: A0A0E9XE39_ANGAN (Uncharacterized protein n=1 Tax=Anguilla anguilla TaxID=7936 RepID=A0A0E9XE39_ANGAN) HSP 1 Score: 63.5 bits (153), Expect = 3.360e-9 Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 196 FKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGLA 426
FK ++++AL+ L+GE+G+ A+P DVL ++ LRV +V + +AL+L+GS + PCA+ VV+VSPFL L+
Sbjct: 45 FKQIVISALRDLYGEIGA-AFPFDVLKFEEDTLTAVLRVYNSGLVKLWSALTLLGSYHSEPCAVRVVQVSPFLLALS 120
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: UPI001AACA93D (ribonuclease P protein subunit p14-like isoform X2 n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACA93D) HSP 1 Score: 63.2 bits (152), Expect = 4.660e-9 Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 166 QGVHLSTDVSFKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGLA 426
+GV L T +KSLI++A+K LHGEVG+ + P+D+L +D LR+ + V + +L+L+G N C+I V++VSPFL LA
Sbjct: 36 EGVKL-TAAQYKSLIVSAVKELHGEVGA-SCPLDLLKYDDKTLSAILRINSSGFVKLWTSLTLLGHYQNQECSIRVLQVSPFLLALA 120
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: UPI0008550BAE (ribonuclease P protein subunit p14 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008550BAE) HSP 1 Score: 62.4 bits (150), Expect = 8.940e-9 Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 166 QGVHLSTDVSFKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGLA 426
+GV L T +KSLI++A+K LHGEVG+ + P+D+L ++ LR+ + V + +L+L+G N C++ V++VSPFL LA
Sbjct: 36 EGVKL-TAAQYKSLIVSAVKELHGEVGA-SCPLDLLKYEEKTLSAILRIRSSGFVKLWTSLTLLGQYQNQACSVCVIQVSPFLLALA 120
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: A0A2B4T178_STYPI (Ribonuclease P protein subunit p14 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4T178_STYPI) HSP 1 Score: 60.1 bits (144), Expect = 6.010e-8 Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 190 VSFKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGLACE 432
V+FKS+++ L ALHG+VGS A VD++ ++A E LRV +V + +AL+L+ + CAI V++VSP+L L +
Sbjct: 35 VTFKSILIQTLDALHGKVGS-AISVDIIKFEASLKEAILRVKESGLVKLWSALTLLSYYKDKRCAIYVIQVSPYLLSLGAD 114
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: A0A1A8LBW7_9TELE (Uncharacterized protein n=8 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8LBW7_9TELE) HSP 1 Score: 59.7 bits (143), Expect = 8.680e-8 Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query: 190 VSFKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGL 423
V KSLI+T LK LHGEVG+ A P DVL +D + LRV + +V + ++L+L G + CA V++VSPFL L
Sbjct: 43 VELKSLIITGLKDLHGEVGA-ALPFDVLKFDEGSLTAVLRVCSGGLVKLWSSLTLQGYYQSQACAFRVLQVSPFLLAL 119
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Match: UPI001F047F46 (ribonuclease P protein subunit p14-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F047F46) HSP 1 Score: 58.2 bits (139), Expect = 3.030e-7 Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 190 VSFKSLILTALKALHGEVGSWAYPVDVLSWDAVNGEGRLRVPARSIVPIRAALSLVGSCGNVPCAIDVVEVSPFLAGLA 426
V KS I++A+K LHG VGS + +D+L D NGE LRV + ++V + ++L+L+ + C +V +VSP+L LA
Sbjct: 37 VQLKSFIVSAVKQLHGSVGS-STVIDILKVDKRNGEIILRVKSSNLVKLWSSLTLINKYNDNACRFNVQQVSPYLMSLA 114 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig99.16178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig99.16178.1 >prot_P-lacustris_contig99.16178.1 ID=prot_P-lacustris_contig99.16178.1|Name=mRNA_P-lacustris_contig99.16178.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=148bp MDVSSHTVPAAFCFIAVKLTWQSVQSCTPKRSKRGKLKGQGTTQQQQATQback to top mRNA from alignment at P-lacustris_contig99:51606..53440- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig99.16178.1 ID=mRNA_P-lacustris_contig99.16178.1|Name=mRNA_P-lacustris_contig99.16178.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1835bp|location=Sequence derived from alignment at P-lacustris_contig99:51606..53440- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig99:51606..53440- >mRNA_P-lacustris_contig99.16178.1 ID=mRNA_P-lacustris_contig99.16178.1|Name=mRNA_P-lacustris_contig99.16178.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=888bp|location=Sequence derived from alignment at P-lacustris_contig99:51606..53440- (Pleurocladia lacustris SAG_25_93)back to top |