mRNA_P-lacustris_contig988.16170.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig988.16170.1
Unique NamemRNA_P-lacustris_contig988.16170.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.260e-35
Identity = 140/409 (34.23%), Postives = 189/409 (46.21%), Query Frame = 3
Query:   39 MHIYPELTCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFL----ANVSAGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALY--SVPGNFLRALRRCPAFGCRRCRRELPRFYAQQQ*FCPQNDCSWRP*PARQRLGDRWDQP*LAGRFRCN-------PLHEAAENGLDKVVASLMLKGV-DKDALDLSGNSPLMAAIQYGHLVVVETVLVADAHVTVRFEG*------------------------REGSESDSWTCGGM*LWLYSPHRPAHRCTT*PGRCR*IADPGRGGCRAHRGQSGRTPLLEAADQSNSKAMLALLQRGAIVPARDSDGHLLLNLASSRTRKGLEAAADVLLRWGADESAVNDEKMIPADV 1151
            MH+YP+   L+G E EIFKL+   AT EQW   LRA     HAAAR N+     L    AN  AGWRG RGRT+LD AALGGN  +V++ LL  G  SDVNVVS +SS+ SAL+  SV G+   A             ++L    A      P + C         R GD  D   + G    +       PLH AA +G ++VV++L+   + D DALD  G SPLM A + GH   VE +L A A + +R  G                           G    +    G+    ++    A       G     AD     C A     G TPL      ++ +A++ALL+RG  V   +  G   L+L      +G++   D+LLRWGA E+AVN   + P+D+
Sbjct:    1 MHLYPKRALLEGAELEIFKLLYFGATPEQWAEWLRAPLE--HAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVAT-LLASGCASDVNVVS-LSSRRSALHVASVCGHEAAA-------------KKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHARGAQAVDVLLDAG-----ADVNAKACPALH---GFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDI 384          
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.480e-27
Identity = 95/241 (39.42%), Postives = 120/241 (49.79%), Query Frame = 3
Query:   39 MHIYPELTCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFL----ANVSAGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALYSVPGNFLRALRRCPAFGCRRCRRELPRFYAQQQ*FCPQNDCSWRP*PARQRLGDRWDQP*LAGRFRCNPLHEAAENGLDKVVASLMLKGVDKDALDLSGNSPLMAAIQYGHLVVVETVLVADAHVTV 749
            M++YP+   LQGMESEI+KLVS+ AT +QW   LR      HAAAR N++  N L    A+ SAGWRG   RTL+D AALGG+  +VS ALLR GAQ DVN VS +SSK SALY+                                                           + G       HE A  GLD++V++L+L+G   DA D SG +PL+ A   GHL VV T+L A A V +
Sbjct:    1 MYVYPKRRLLQGMESEIWKLVSYGATPQQWKEWLRVPLE--HAAARGNLNLVNSLLEAGADGSAGWRGCLDRTLIDAAALGGSEPVVS-ALLRAGAQPDVNTVS-ISSKRSALYTAT---------------------------------------------------------VCG-------HEHAARGLDRIVSALLLRGAYTDAQDTSGATPLIYACGSGHLSVVNTLLAAGADVDI 173          
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.080e-24
Identity = 129/399 (32.33%), Postives = 168/399 (42.11%), Query Frame = 3
Query:   60 TCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFLANVS----AGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALYSVPGNFLRALRRCPAFGCR-----RCRRELPRFYAQQQ*FCPQNDCSWRP*PARQRLGDRWDQP*LAGRFRCN---PLHEAAENGL-------------DK-----VVASLMLKGVDKDALDLSGNSPLMAAIQYGHLVVVETVLVADAHVTVRFEG*REGSESDSWTCGGM*LWLYSPHRPAHRCTT*PGRCR*IADPGRGGCRAHRGQSGRTPLLEAADQSNSKAMLALLQRGAIVPARDSDGHLLLNLASSRTRKGLEAAADVLLRWGADESAVNDEKMIPADVDSQLR 1166
            T   G E EIFK+VS  AT EQW   LRA     HAAA  N++  + L        AGWRG RGR+LLD AALGGN  ++S ALL+ G   DVNVV+  + + +   SV G    A R+    G       R  +  P F A +        C          L      P +  R       PLH AA+ GL             DK      V  L+  G D D  DL  +S L+ A QY  + V++ +L     V V           D W            H  A   +T  G    + D G           GRT L  AA+  N++A+LALL+RGA V     DG   L+L S       +   D+LLR GA E AV+     P D+  +++
Sbjct:    6 TSPSGEEVEIFKIVSEGATPEQWARWLRAPLE--HAAASGNLNLVDRLLKAGVDGKAGWRGCRGRSLLDAAALGGNAGVMS-ALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKAGPLFAAVKA------GCD----DLVGNLLMAGANPNVIVRHSFGHGTPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAAGADTDIRDLDSHSALVFAAQYERIDVMKALLEHGVDVNVG---------EDHWN---------PLHWAAQFNST--GCITVLLDAGADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQTTDDGSTALHLVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQ 371          
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.390e-23
Identity = 124/387 (32.04%), Postives = 151/387 (39.02%), Query Frame = 3
Query:   39 MHIYPELTCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFL----ANVSAGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALYSVPG-NFLRALRRCPAFGCRRCRRELPRFYAQQQ*FCPQNDCSWRP*PARQRLGDRWDQP*LAGRFRCNPLHEAAENGLDKVVASLMLKGVDKDALDLSGNSPLMAAIQYGHLVVVETVLVADAHVTVRFEG*REGSESDSWTCGGM*LWLYSPHRPAHRCTT*PGRCR*IADPGRGGC-------------RAHRGQSGRTPLLEAADQSNSKAMLALLQRGAIVPARDSDGHLLLNLASSRTRKGLEAAADVLLRWGADESAVNDEKMIPA 1145
            MH+YPE   LQGMESEI+KLVS+SAT +QW   LR      HAAAR N++  + L    A+ SAGWRG RGRTL+D AALGG+  +VS+ LLR GAQ DVNVVS VSSK SALY+        A RR  A G      E P                                                                                            L A A VT+R        +S S                                                    +  G S   PL  A D  N KAM  LL  GA + A+D++G+  L++A  R  KGLEA  D+LLRWGADE+A+N+    PA
Sbjct:    1 MHVYPERRLLQGMESEIWKLVSYSATPQQWKEWLRMPLE--HAAARGNLNLVSSLLGAGADGSAGWRGCRGRTLIDAAALGGSEPVVST-LLRAGAQWDVNVVS-VSSKRSALYTATMCGHEDAARRLVAAGAD-VDFEDP---VHGNPVLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTAGADVTIRDNCDHSALDSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESSEGGSLAPPLFSATDPRNLKAMHTLLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPA 379          
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.750e-23
Identity = 70/115 (60.87%), Postives = 82/115 (71.30%), Query Frame = 3
Query:   39 MHIYPELTCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFL----ANVSAGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALYS 371
            MH+YPE    QGM SEI+KLVSHSAT +QW   LR      HAAAR N++  N L    A+ SAGW+G RGRTL+D AALGG+  +VS ALLR GAQ DVNVVS VSSK S+LY+
Sbjct:    1 MHVYPERRLFQGMGSEIWKLVSHSATPQQWKEWLRVPLE--HAAARGNLNLVNSLLEAGADGSAGWKGCRGRTLIDAAALGGSEPVVS-ALLRAGAQPDVNVVS-VSSKRSSLYT 111          
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 6.230e-23
Identity = 121/383 (31.59%), Postives = 156/383 (40.73%), Query Frame = 3
Query:   39 MHIYPELTCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFL----ANVSAGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALYSVPGNFLRALRRCPAFGCRRCRRELPRFYAQQQ*FCPQNDCSWRP*PARQRLGDRWDQP*LAG-------RFRCNPLHEAAENGLDKVVASLMLK-GVDKDALDLSGNSPLMAAIQYGHLVVVETVLVADAHVTVRFEG*REGSESDSWTCGGM*LWLYSPHRPAHRCTT*PGRCR*IADPGRGGCRAHRGQSGRTPLLEAADQSNSKAMLALLQRGAIVPARDSDGHLLLNLASSRTRKGL-EAAADVLLRWGADESAVNDEKMIPAD 1148
            MH+YP+   L+G E EIFKL+S  AT EQW   LRA     HAAAR N+     L    A+  AGWRG RGRT+LD AA               G   DVNVVS VSSK SAL+                G     R L    A  +   P + C      A    GD      + G       RF   PLH AA  G  +VV++L+       +A D   +SPLM A   GH   VE +L A A  T+R         +     GG  + +                                   G  PL  +A   + + M+ALL+R      +D+ G   L+ A      G    A D+LLRWGA E+A++     P+D
Sbjct:    1 MHLYPKRALLEGAEVEIFKLLSFCATPEQWADWLRAPLE--HAAARGNIGLVERLLEAGADGRAGWRGCRGRTMLD-AAXXXXXXXXXXXXXXSGCAPDVNVVS-VSSKRSALHLAV-----------VCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGRTPLHVAAAVGNSRVVSTLLGDTSTSINARDNDLHSPLMLASANGHRSTVEALLRAGADTTLRCYSGGVSDMAALEMAGGEVVDVXXXXXXXXXXXX---------------------AGGSIPLHASAVHGHDETMVALLKREGNFDEQDNAGRSALHWACIGCLSGTGRTAVDLLLRWGASETALDTRGETPSD 347          
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.250e-22
Identity = 129/411 (31.39%), Postives = 174/411 (42.34%), Query Frame = 3
Query:   39 MHIYPELTCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFL----ANVSAGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALYSVPGNFLRALRRCPAFGCRRCRRELPRFYAQQQ*FCPQNDCSWRP*PAR--------QRLGDRWDQP*LAGRFRCN--------PLHEAAENGLDKVVASLMLKGVDKDAL--DLSGNSPLMAAIQYGHLVVVETVLVADAHVTVR------FEG*REGSESDSWTCGGM*LWLYSPHRPAHRCTT*PGRCR*IADPGRGGCRAH-----------RGQSGRTPLLEAADQSNSKAMLALLQRGAIVPAR-DSDGHLLLNLASSRTRKGLEAAADVLLRWGADESAVNDEKMIPADV 1151
            MHI+PE T L G+ SE+FKLVS+ A++EQW   LR   A+ HAA+R N+     L    A+  +GWRG R RTLLD AA                A +DVN V+ VSS+ SALY+                C  C  E     A ++     +D ++R   A+        Q    ++    L G  R N        PL  AA    + VV++L+L   D +         +PLM A++ GHL +VET+L A A  ++R                                +    CT        I    R G   H           +   G TPL  AA+      + ALLQ  A V  R D+ G   L+ A    R+GL A+ D+LLRWGADE+A N     P DV
Sbjct:    1 MHIFPERTSLDGLGSELFKLVSYGASREQWAEWLRV--ALEHAASRGNLSLVERLLRAGADAGSGWRGCRCRTLLD-AAXXXXXXXXXXXXXXXXAGADVNKVT-VSSRRSALYTAT--------------C--CGHEA----AAKRLILAGSDVNFRDPVAKCSVLSQAIQGSHTQFVDDLLIGGARPNIRDDCGMAPLQAAALFAEEGVVSALLLAKADVNVGLGKTMYETPLMLAVRRGHLAIVETLLEAGADCSLRQLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTA---ILFSDRAGPAVHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDV 384          
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.420e-22
Identity = 89/248 (35.89%), Postives = 125/248 (50.40%), Query Frame = 3
Query:   39 MHIYPELTCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFL----ANVSAGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALYSVPGNFLRALRRCPAFGCRRCRRELPRFYAQQQ*FCPQNDCSWRP*PARQRLGDRWDQP*LAGRFRCNPLHEAAENGLDKVVASLMLKGVDKDALDLSGN------SPLMAAIQYGHLVVVETVLVADAHVTVR 752
            MHI+PE T L G+ SE+FKLVS+ A++EQW   LR      HAA+R N +    L    A+  AGWRG RGRTLLD AALGGN  ++S AL+R GA +DVN V+ VSS+ SAL++                C  C  E     A ++      D ++R   A+                 C+ L +A +    ++V  L + G   +  D  G       +  M A++ GHL +VET+L A A  ++R
Sbjct:    1 MHIFPERTSLDGLGSEVFKLVSYGASREQWAEWLRVPLE--HAASRGNPNLVERLLQAGADAGAGWRGCRGRTLLDAAALGGNADVMS-ALIRGGAGADVNKVT-VSSRRSALHTAT--------------C--CGHEA----AAKRLVLTGADVNFRDPVAK-----------------CSVLSQAIQGSHTQLVNDLPIGGARPNIRDDCGLGKTTYVTTFMLAVRRGHLAIVETLLEAGADCSLR 207          
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.310e-17
Identity = 88/251 (35.06%), Postives = 117/251 (46.61%), Query Frame = 3
Query:   39 MHIYPELTCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFL----ANVSAGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALYSVPGNFLRALRRCPAFGCRRCRRELPRFYAQQQ*FCPQNDCSWRP*PARQRLGDRWDQP*LAGRFRCNP-LHEA-----AENGLDKVVASLMLKGVDKDALDLSGNSPLMAAIQYGHLVVVETVLVADAHVTVRFEG 761
            M +YPE   LQGMESEI+KLVS+SAT +QW   LR      HAAAR N++  N L    A+  AGW+                           GAQ DVNV+S VSSK SALY+                                  C   D + R   A   +   +D P       C+  L+EA      + GLD+VV++L+L+    DAL+  G++PL+ A + GHL VV T+L A A+VT+R  G
Sbjct:    1 MRVYPERGLLQGMESEIWKLVSYSATPQQWKEWLRVPLK--HAAARGNLNRVNSLLEAGADGIAGWK---------------------------GAQWDVNVLS-VSSKRSALYTAT-------------------------------VCGHEDAARRLITAGADVN--FDDP-----VHCSHVLYEAILGGHTQLGLDRVVSTLLLRRAFTDALEKRGSTPLIYACESGHLSVVNTLLTAGANVTIRSIG 183          
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Match: A0A6H5JW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW91_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-16
Identity = 66/146 (45.21%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   42 HIYPELTCLQGMESEIFKLVSHSATKEQWT*RLRATAAV*HAAARENVDHFNFLANV----SAGWRGFRGRTLLDVAALGGNVYIVSSALLREGAQSDVNVVSDVSSKGSALYS-----------------VPGNFLRALRRCPAF 416
            HIYP+   L+G+E EIFKLVS+SAT EQW   L+       AAA  N D F  L       SAGWRG R R+L+D AA+GGNV +VS   L  GA+ DV VVS  SSK SAL +                    NF+  +R+ PAF
Sbjct:   45 HIYPKRVLLEGLEIEIFKLVSYSATPEQWKEWLQVPLE--RAAALGNRDLFYKLLEAGAYGSAGWRGCRDRSLIDAAAVGGNVDVVSG-FLEAGAEPDVQVVS-WSSKTSALCTPVRFGHEDVARRLVTAGADVNFVDPMRKSPAF 186          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig988.16170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1F4_9PHAE1.260e-3534.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRS0_ECTSI1.480e-2739.42Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FXA8_ECTSI1.080e-2432.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LS36_ECTSI1.390e-2332.04Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LRZ8_ECTSI2.750e-2360.87Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LE08_ECTSI6.230e-2331.59Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D7FLL7_ECTSI1.250e-2231.39Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNQ1_9PHAE7.420e-2235.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW4_9PHAE1.310e-1735.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW91_9PHAE1.300e-1645.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig988contigP-lacustris_contig988:45620..47138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1485
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig988.16170.1prot_P-lacustris_contig988.16170.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig988 46591..46929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.7851737-UTR-P-lacustris_contig988:45619..465901622817418.7851737-UTR-P-lacustris_contig988:45619..46590Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig988 45620..46590 +
1693495053.5389428-UTR-P-lacustris_contig988:45619..465901693495053.5389428-UTR-P-lacustris_contig988:45619..46590Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig988 45620..46590 +
1622817418.8097498-UTR-P-lacustris_contig988:46929..469951622817418.8097498-UTR-P-lacustris_contig988:46929..46995Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig988 46930..46995 +
1693495053.5606012-UTR-P-lacustris_contig988:46929..469951693495053.5606012-UTR-P-lacustris_contig988:46929..46995Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig988 46930..46995 +
1622817418.8200264-UTR-P-lacustris_contig988:47029..471381622817418.8200264-UTR-P-lacustris_contig988:47029..47138Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig988 47030..47138 +
1693495053.5723777-UTR-P-lacustris_contig988:47029..471381693495053.5723777-UTR-P-lacustris_contig988:47029..47138Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig988 47030..47138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.7987158-CDS-P-lacustris_contig988:46590..469291622817418.7987158-CDS-P-lacustris_contig988:46590..46929Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig988 46591..46929 +
1693495053.5504127-CDS-P-lacustris_contig988:46590..469291693495053.5504127-CDS-P-lacustris_contig988:46590..46929Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig988 46591..46929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig988.16170.1

>prot_P-lacustris_contig988.16170.1 ID=prot_P-lacustris_contig988.16170.1|Name=mRNA_P-lacustris_contig988.16170.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=113bp
MLALLQRGAIVPARDSDGHLLLNLASSRTRKGLEAAADVLLRWGADESAV
NDEKMIPADVDSQLRWFLGQPVFVGRARADAATAGSGSGRQGLASPRLAG
HASVARRESHER*
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mRNA from alignment at P-lacustris_contig988:45620..47138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig988.16170.1 ID=mRNA_P-lacustris_contig988.16170.1|Name=mRNA_P-lacustris_contig988.16170.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1519bp|location=Sequence derived from alignment at P-lacustris_contig988:45620..47138+ (Pleurocladia lacustris SAG_25_93)
CACGACCTCAGATACATGTAGCTTGGCGCCAGTAAAGTATGCACATCTAC CCCGAGCTTACGTGCCTACAAGGAATGGAGAGCGAGATCTTCAAGCTGGT TTCGCATAGCGCCACGAAAGAGCAGTGGACATAGCGGCTTAGAGCCACTG CTGCTGTGTAGCATGCTGCCGCTCGAGAGAACGTTGACCACTTCAACTTT CTCGCGAACGTGAGTGCAGGTTGGAGAGGTTTTCGTGGCCGTACTCTGCT CGATGTAGCCGCTCTCGGTGGAAACGTGTACATCGTATCATCAGCCTTGC TTCGAGAAGGTGCTCAATCGGACGTGAACGTGGTATCTGATGTCTCCAGC AAGGGGTCGGCTCTGTACTCTGTACCCGGCAACTTTCTGCGGGCACTAAG ACGTTGCCCGGCGTTTGGTTGTCGCCGGTGCCGACGTGAACTTCCAAGAT TCTATGCACAACAGCAGTAGTTCTGTCCTCAAAACGACTGTTCATGGCGG CCATGACCAGCTCGTCAACGACTTGGTGATAGGTGGGACCAACCCTGACT CGCGGGACGATTTCGGTGCAACCCACTTCACGAAGCTGCTGAAAATGGGC TTGACAAAGTAGTGGCTTCCCTCATGCTCAAGGGGGTGGACAAGGATGCT CTGGACTTGAGCGGAAATTCCCCACTCATGGCTGCAATCCAGTACGGGCA TCTGGTTGTTGTGGAGACTGTGCTCGTCGCTGATGCCCATGTCACCGTCC GCTTCGAGGGGTGACGTGAAGGTTCAGAGAGCGATTCTTGGACATGTGGC GGAATGTGACTTTGGCTATACTCACCACACCGTCCTGCACATCGCTGCAC AACATGACCAGGCCGGTGCCGTTGAATCGCTGATCCAGGCAGGGGCGGAT GTCGAGCTCACCGAGGACAGTCGGGCCGTACACCTCTGCTAGAAGCAGCT GATCAGAGCAACTCCAAAGCCATGCTCGCCCTCTTGCAGCGCGGAGCCAT CGTCCCTGCACGAGACAGTGATGGGCATCTGCTACTGAACCTTGCCAGTT CCAGAACGCGCAAAGGTCTGGAGGCGGCCGCGGACGTCCTACTGCGATGG GGAGCGGATGAATCAGCCGTGAACGATGAAAAGATGATCCCTGCAGACGT AGATTCTCAATTACGATGGTTTCTGGGACAACCAGTGTTCGTGGGCCGAG CGAGGGCGGACGCCGCTACTGCTGGCTCGGGCTCCGGCCGACAGGGCCTG GCGTCGCCGCGGCTGGCTGGTCATGCTTCGGTCGCTCGCAGAGAAAGCCA TGAACGCTAGCTTAGGTTCAGGTGATGGAAATGGAGAGGACTGCAAGGTC GTGAGGAGGGAGACTCGGGGGGGTCGGTAGGCACGGTGGGAGTGGTCAAG CCATCAACAGTGGAGACAGGGTTGGAGCAGATGGTGTGCGGGGAAGCTGG AGCGGTGTGGTGGCCTTGCTGTTAGGGTTGGAGCCGGAGGACGTGTTCCG CACGGTGGTGGACTGTCTG
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Coding sequence (CDS) from alignment at P-lacustris_contig988:45620..47138+

>mRNA_P-lacustris_contig988.16170.1 ID=mRNA_P-lacustris_contig988.16170.1|Name=mRNA_P-lacustris_contig988.16170.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=678bp|location=Sequence derived from alignment at P-lacustris_contig988:45620..47138+ (Pleurocladia lacustris SAG_25_93)
ATGCTCGCCCTCTTGCAGCGCGGAGCCATCGTCCCTGCACGAGACAGTGA
TGGGCATCTGCTACTGAACCTTGCCAGTTCCAGAACGCGCAAAGGTCTGG
AGGCGGCCGCGGACGTCCTACTGCGATGGGGAGCGGATGAATCAGCCGTG
AACGATGAAAAGATGATCCCTGCAGACGTAGATTCTCAATTACGATGGTT
TCTGGGACAACCAGTGTTCGTGGGCCGAGCGAGGGCGGACGCCGCTACTG
CTGGCTCGGGCTCCGGCCGACAGGGCCTGGCGTCGCCGCGGCTGGCTGGT
CATGCTTCGGTCGCTCGCAGAGAAAGCCATGAACGCTAGATGCTCGCCCT
CTTGCAGCGCGGAGCCATCGTCCCTGCACGAGACAGTGATGGGCATCTGC
TACTGAACCTTGCCAGTTCCAGAACGCGCAAAGGTCTGGAGGCGGCCGCG
GACGTCCTACTGCGATGGGGAGCGGATGAATCAGCCGTGAACGATGAAAA
GATGATCCCTGCAGACGTAGATTCTCAATTACGATGGTTTCTGGGACAAC
CAGTGTTCGTGGGCCGAGCGAGGGCGGACGCCGCTACTGCTGGCTCGGGC
TCCGGCCGACAGGGCCTGGCGTCGCCGCGGCTGGCTGGTCATGCTTCGGT
CGCTCGCAGAGAAAGCCATGAACGCTAG
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