mRNA_P-lacustris_contig987.16167.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig987.16167.1
Unique NamemRNA_P-lacustris_contig987.16167.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig987.16167.1 vs. uniprot
Match: A0A6H5JXD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.420e-16
Identity = 46/70 (65.71%), Postives = 51/70 (72.86%), Query Frame = 2 
Query: 1133 GSDLRRERETRLSAAGSAKMSPRPAGPEPDWHIKLEEASRPSGLGH-----WEAFPGAQSRWGHGSNNAG 1327
            GSDLRRERE+RL A GSAK SPRPAGPEP WH+KLE +S P G G       E  PGA+ RWGHGSN+ G
Sbjct: 1718 GSDLRRERESRLVAVGSAKASPRPAGPEPSWHVKLETSSHPGGEGQPNGQPLETCPGAKPRWGHGSNSGG 1787
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BLAST of mRNA_P-lacustris_contig987.16167.1 vs. uniprot
Match: D8LHQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 9.430e-14
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 2 
Query: 1133 GSDLRRERETRLSAAGSAKMSPRPAGPEPDWHIKLEEASRPSGLGH-----WEAFPGAQSRWGHGSNNAG 1327
            GSDLRRERE+RL A GS K SPRPA PEP WH+KLE +S P G G       E  PGA+  WGHGSN+ G
Sbjct: 1668 GSDLRRERESRLVAVGSGKASPRPASPEPGWHVKLEASSHPGGEGQPDKQPLETCPGAKPCWGHGSNSGG 1737
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BLAST of mRNA_P-lacustris_contig987.16167.1 vs. uniprot
Match: A0A6H5KVG3_9PHAE (HECT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVG3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.290e-5
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 2 
Query: 1382 LSLPILKHLLGLPVAFSDLEFADTELYRN 1468
            LSLPILKH+LGLPVAFSDLEFAD ELYRN
Sbjct:  928 LSLPILKHMLGLPVAFSDLEFADAELYRN 956
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig987.16167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JXD9_9PHAE4.420e-1665.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHQ6_ECTSI9.430e-1461.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVG3_9PHAE3.290e-593.10HECT domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig987contigP-lacustris_contig987:68498..72889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue6.1e-13
Seed eggNOG ortholog2880.D8LHQ6
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_002690.1
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons4
Model size1469
Cds size825
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig987.16167.1prot_P-lacustris_contig987.16167.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig987 68938..71128 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.2887685-UTR-P-lacustris_contig987:68497..689371622817418.2887685-UTR-P-lacustris_contig987:68497..68937Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 68498..68937 +
1693495053.1121805-UTR-P-lacustris_contig987:68497..689371693495053.1121805-UTR-P-lacustris_contig987:68497..68937Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 68498..68937 +
1622817418.3353236-UTR-P-lacustris_contig987:71128..712441622817418.3353236-UTR-P-lacustris_contig987:71128..71244Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 71129..71244 +
1693495053.1558068-UTR-P-lacustris_contig987:71128..712441693495053.1558068-UTR-P-lacustris_contig987:71128..71244Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 71129..71244 +
1622817418.3459117-UTR-P-lacustris_contig987:72801..728891622817418.3459117-UTR-P-lacustris_contig987:72801..72889Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 72802..72889 +
1693495053.1688874-UTR-P-lacustris_contig987:72801..728891693495053.1688874-UTR-P-lacustris_contig987:72801..72889Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 72802..72889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817418.2991836-CDS-P-lacustris_contig987:68937..691291622817418.2991836-CDS-P-lacustris_contig987:68937..69129Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 68938..69129 +
1693495053.1285605-CDS-P-lacustris_contig987:68937..691291693495053.1285605-CDS-P-lacustris_contig987:68937..69129Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 68938..69129 +
1622817418.3106666-CDS-P-lacustris_contig987:69795..703711622817418.3106666-CDS-P-lacustris_contig987:69795..70371Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 69796..70371 +
1693495053.1374786-CDS-P-lacustris_contig987:69795..703711693495053.1374786-CDS-P-lacustris_contig987:69795..70371Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 69796..70371 +
1622817418.3244712-CDS-P-lacustris_contig987:71071..711281622817418.3244712-CDS-P-lacustris_contig987:71071..71128Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 71072..71128 +
1693495053.1465578-CDS-P-lacustris_contig987:71071..711281693495053.1465578-CDS-P-lacustris_contig987:71071..71128Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 71072..71128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig987.16167.1

>prot_P-lacustris_contig987.16167.1 ID=prot_P-lacustris_contig987.16167.1|Name=mRNA_P-lacustris_contig987.16167.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=275bp
MFELLVRFAFRGTTCLEPRLLLSGWCCRAPLDLGHLLLGFFRRYCSSSEE
GITPETVLHIQGLTVDLGSARRALVASTEFSEAFQTLASAIDEGSGNTGS
PDAESLADGGDWSNPMRSGDDHGFAGGAKGGRGEGGASCVGGADGNFQVS
EIAEVSADGRRPHSHPSSAVGVGVSEKRETTSWERLRGDGIGATDRPASQ
HRSGSSREPQRQRTEGDAQPRRRSILGRVIWGRTFAARGRPDSPLRAAPR
CLRVPQAQNRTGISSSRRRHAPVV*
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mRNA from alignment at P-lacustris_contig987:68498..72889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig987.16167.1 ID=mRNA_P-lacustris_contig987.16167.1|Name=mRNA_P-lacustris_contig987.16167.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4392bp|location=Sequence derived from alignment at P-lacustris_contig987:68498..72889+ (Pleurocladia lacustris SAG_25_93)
ATCCAAAATTCGGGAGGGCAAGATGTCTTCTCTGATGGTATACCTAGGCT
GTTTCCAAGCGCTGGTCGATTTAGTGCACTCCCAGGTTGGCGGACAAGTG
CATGAAGATGGCCTCTCGTGCCGCTTTGCACTTGAATTTTGGGTAAGGGG
GCCAAAAAAAAGAAACCAAGAGTGGGGGCTCCTATTTTTTTGCGACACTT
TTTTTTTGTTTTGTGCTAGGTGCAACCCGGGCGGAACTGCTGTACGTACC
CCTCTTAACCGTGTACGGATGCACGTTGTTCTCTTTCCTGAACCAACTGG
CCTGGATTTGGATTGTATGTCGTCCTTGGTTCGGTAGATGTTCGTGTCCC
CCAACATTCGCCACACTCGCGTTTGCCTCTCTTTCGCTAGAGGATTCATT
CCGCCGCCTTGTCCCTATCTAGGACCTGCAGTTCTCCCGCATGTTTGAAC
TCTTAGTTCGATTTGCTTTTCGCGGTACGACTTGCTTGGAACCGCGGCTC
CTCCTCTCTGGTTGGTGCTGCAGAGCGCCACTCGACCTGGGACACCTCCT
CCTTGGCTTCTTCCGCCGCTACTGCAGCTCCTCCGAGGAAGGCATCACCC
CCGAAACTGTTCTGCACATCCAGGGCCTTACCGTGAGATCTGGCCCAACT
ACCGTACTGCTAATAATTTAGATGCGAAGATGGTCGCCCGACAATGCAAA
TCATCTTCTTTTTTTTATGTTTATATTTTTATTTTTTTATTTCAAAAAGA
GGCGTGTTTGTTTCCTGACACCACCAAATTGCAGTTGCTGGTGTTTGATT
TGATCATGACGACAACTGATACGCTTCCCATTTTTTTGATGGCGGTGCCG
ACTCGTCGATGTTCCGTCGCCTTTTGTCGTCCCTGGCTAATTTTGGGTTC
GTCACGGCGCCCCGTCCCCGCTTCGCATGGCGGGTACACGCCTCGCACCC
CATTTTTTTGGTGTGCGTAGCCCGCTCGTAGTCGTCTCGCCTTTTGCTTC
TTTGGGGATGCTCTCTCCACGCCCTCTTCAAATTTTGAGGGAAGGATTGT
TGACGCGCCTTGTGCTACACGCCTCGTGCCACAGCCTTTGATAAAAAACC
TCCACGAGAGGACGCTGTGACTTTGCCGAGAGGCGTCTTGTAGAGGGCCG
CGGCCGAGTGTTCACAGGGGTGGGGTGTACCTTTTTTCTGTTTGGCTCAA
GAGGCTGAGGTTAGTTCCAACGACGTCGCCCTCGCTCTACAAGTAAGACC
TGCCCTTTTCTCTTTTTTTATCTGCCTCTTCGGAATTTATCGAAACAGGT
TGATCTCGGTTCGGCTCGTAGGGCCCTGGTAGCTTCAACGGAATTCTCGG
AGGCATTCCAGACGCTAGCCTCCGCCATCGACGAGGGCTCTGGCAACACC
GGCAGCCCGGATGCGGAATCGTTGGCAGATGGCGGCGACTGGAGCAACCC
TATGAGGTCCGGCGACGACCACGGCTTCGCCGGTGGCGCTAAAGGTGGGA
GGGGCGAAGGAGGAGCAAGCTGTGTCGGCGGCGCCGACGGAAACTTCCAA
GTTAGCGAGATCGCAGAGGTTAGTGCCGACGGACGACGACCGCACAGCCA
TCCCTCCTCCGCGGTCGGGGTCGGTGTTTCCGAAAAACGAGAAACCACAA
GCTGGGAGCGCCTTCGAGGCGACGGAATTGGCGCCACAGACCGTCCCGCG
TCGCAACACCGTAGTGGGAGTTCCAGAGAACCGCAACGACAGCGGACAGA
GGGGGACGCTCAACCTAGGCGCCGGTCGATTCTGGGGAGGGTGATCTGGG
GTCGGACCTTCGCCGCGAGAGGGAGACCAGACTCTCCGCTGCGGGCAGCG
CCAAGATGTCTCCGCGTCCCGCAGGTATGTCGTTGTTATGCTGGTGGCTT
GCTGCTGCCGCTGTTGCTGCTGCTGCTTTGTGTGAAGTTCTTGGTGATGG
TTTCCATTGTTGTGGATGGTGTGATATCACGCTGTAGAAGTAGTTCCAGT
ATAGCTCCGGAGTTTTTCGTGTCGGCTGTCTCTCCCTGGATGCATAAAAA
AGGGAAAAGGCTTTTTTGCCCAGCTGTACGTGCTGTTTGACTTCGTCCGG
CTATCGTGAGCGACAGCAAGCCAGCCCCACACCGCTCGGGTGTGATGTGA
AATGTGAGGGGTGGGCCCCGACGGCTGTGCTTCTCCTTTGAGAGGACCCA
GGCCTCCTTTTCTCAAGTATTATCTGACGGTATATACGTGGTTTGATCAC
CCCCTCATCTCCGCGCCTAGGGTGTATGAGGTTCCCTTCATCTGCCCAAA
TGACGTCAGCACTCCTGGTTTACGCCTCCCCCTTCTCGTCACGCCCCCTC
TCTCTCTTGACGTGTCCGTCCATCGCGTGCATAAGCAGCTATCCTAGCTG
TCTCTACCGGAAAACCTTTTCCGACATCATGCTCTGACGACACGCGTCCA
AATTTCCTCGTCGAAGCTCAGAAAATAAAGTGAAGTTCAGATAAGTATTT
TCCCGTATCACCCTTTCCCATATCACCCCCTTCGCCGCTGCCCTTCCGCG
GTCCGTTTGGGTGGGTTCTGTCAGGCCCAGAACCGGACTGGCATATCAAG
CTCGAGGAGGCGTCACGCCCCAGTGGTTTAGGCCATTGGGAAGCGTTCCC
CGGGGCGCAGAGTCGATGGGGCCACGGGTCCAACAACGCCGGATGTGGCG
GCGGCGGCGGCGGCAGAGGTACGGGTCAGAAGCGAAAGCAGCAACAACTC
CAAACGTCAAGAGGCAAGGCGCAGAGGGAGGATAGGACGAGAGATAAAAA
AGTGAAGCGAAGAGGGGAAAACACGGCAACGGCAACGGGAACGGCAACGG
CTACGTTAGCCCGCGGAAGCGCCACCAAAGACAAGCGGAAGAGGGACTAC
GAGACCGATGGGAGCACCAAGCTGCAGAGAAAGAGAGCCAGGCGGAAGGA
AAGAAAGGATGCCGAGGCAAGGGGGGCCACAGTTAGGACGATGGGTGTTC
CGGGGGAGCATGCGCCAATGTGTTGGATGACGGCGTTGCCTAGTGCTTGA
GGACACAGAGCATCTATCACATTTGTTTCAGAGAGGCATTGCATGGACGG
CGGCTTCAATTGGAGATGATTTTGAGTGGATTCAGATTACGCAAGCACGG
GCAGAGGAGAGCTGTCGCTCCAGCCGTTTATTTTATTTTTTTTGGATCCG
ACGAACAAGTTCGAACACGGAGGCGGGGTACGGTTGCCGATCGACATTCT
TGAACGAAGCAGTCTACCTTTATTGGAACGAAATCTAGAGAGTTTGTTGA
GTTTATATTTGTGCCCAGACCGCGATGTGGGGTTCTGTACTACGGTCAAG
GAGGAATACTTGGGCGAATCATTCCAATCATTTGGCAACAACCCAGAAGC
TACCTTACCTGATTCGAAGCAGTTCGACGTACGCCACTACACTGCTAGCG
CTTCCATTGGGAAGGAGACGCGTTCATGTATCCTAGCGTCGCCGAAGCGG
CGCGCGGATTTACTTTTTTTCTTCAAGGCCGCTGCGCACGGATGGTTCCT
TTGAGACAGACCGGAGTTTTGTCATGGGTACGCTGGGGTATGCTCTGATT
TATTCTGGGACGCGTGAAATGCACTTATAAGGATCGCCGGCGTGACGATT
TGGCCCTGACGTAGCGTACGGTCATGTCTCAGAGGAGGGGCGAGCACCCC
AGAAGCGGCAGCAGTCGCCCAACACCGCAAGCGAGCGGCTCACCCCCTTC
AAGGATTGGCTGGCAACACCTACCGACATACTCTCTCTAATTTGCTCTCA
AAACGTCACACGCTCTAGACGTACAAAATACTGAAGGTTTAGCTCCTGCG
GGCATAAATCCTCAAAGACCAGCTCACGCTTGATACTCGCGGGGGTGGTC
CGCTGCACCCCAACCGTCGAAAAGACCCACCGTGATGCGCGCAACCGTCC
CGTCTCGGCCTCCTCCGACGGAAAGGGCCGCGTAGCACACCGGACAAGCT
ACCCGCCGGTCGCTCACAGACACCGCTGTTACTCATCGTACTCATCAAAC
GCGCGGGTGAAGTCCCCGACCAGTTAAAACCAGATCAATCAAGCCTGCCC
CGTGAATTCGACATGCCGACTGCAACATCAAGGACAGGTGCTTTTATCTT
TTCTAAACGTTTTTCGAAGAAAGAATACGAACTTGTTTCCTCCTTTTTCA
CTCTGCAGGTACAGTAGACACCCCACCACCACCTACTGGAAAACCTCTCC
TCGACGTAGGTGTTCGGCAAACTCCTGATGGAGCACAGCGTGGCGCCGTA
TCACCTTTCTCTCCCCATCCTCAAGCACCTGCTCGGCCTGCCGGTGGCGT
TTTCCGACCTGGAGTTTGCCGACACGGAGTTGTACCGCAACC
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Coding sequence (CDS) from alignment at P-lacustris_contig987:68498..72889+

>mRNA_P-lacustris_contig987.16167.1 ID=mRNA_P-lacustris_contig987.16167.1|Name=mRNA_P-lacustris_contig987.16167.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1650bp|location=Sequence derived from alignment at P-lacustris_contig987:68498..72889+ (Pleurocladia lacustris SAG_25_93)
ATGTTTGAACTCTTAGTTCGATTTGCTTTTCGCGGTACGACTTGCTTGGA
ACCGCGGCTCCTCCTCTCTGGTTGGTGCTGCAGAGCGCCACTCGACCTGG
GACACCTCCTCCTTGGCTTCTTCCGCCGCTACTGCAGCTCCTCCGAGGAA
GGCATCACCCCCGAAACTGTTCTGCACATCCAGGGCCTTACCATGTTTGA
ACTCTTAGTTCGATTTGCTTTTCGCGGTACGACTTGCTTGGAACCGCGGC
TCCTCCTCTCTGGTTGGTGCTGCAGAGCGCCACTCGACCTGGGACACCTC
CTCCTTGGCTTCTTCCGCCGCTACTGCAGCTCCTCCGAGGAAGGCATCAC
CCCCGAAACTGTTCTGCACATCCAGGGCCTTACCGTTGATCTCGGTTCGG
CTCGTAGGGCCCTGGTAGCTTCAACGGAATTCTCGGAGGCATTCCAGACG
CTAGCCTCCGCCATCGACGAGGGCTCTGGCAACACCGGCAGCCCGGATGC
GGAATCGTTGGCAGATGGCGGCGACTGGAGCAACCCTATGAGGTCCGGCG
ACGACCACGGCTTCGCCGGTGGCGCTAAAGGTGGGAGGGGCGAAGGAGGA
GCAAGCTGTGTCGGCGGCGCCGACGGAAACTTCCAAGTTAGCGAGATCGC
AGAGGTTAGTGCCGACGGACGACGACCGCACAGCCATCCCTCCTCCGCGG
TCGGGGTCGGTGTTTCCGAAAAACGAGAAACCACAAGCTGGGAGCGCCTT
CGAGGCGACGGAATTGGCGCCACAGACCGTCCCGCGTCGCAACACCGTAG
TGGGAGTTCCAGAGAACCGCAACGACAGCGGACAGAGGGGGACGCTCAAC
CTAGGCGCCGGTCGATTCTGGGGAGGGTGATCTGGGGTCGGACCTTCGCC
GCGAGAGGGAGACCAGACTCTCCGCTGCGGGCAGCGCCAAGATGTCTCCG
CGTCCCGCAGGTTGATCTCGGTTCGGCTCGTAGGGCCCTGGTAGCTTCAA
CGGAATTCTCGGAGGCATTCCAGACGCTAGCCTCCGCCATCGACGAGGGC
TCTGGCAACACCGGCAGCCCGGATGCGGAATCGTTGGCAGATGGCGGCGA
CTGGAGCAACCCTATGAGGTCCGGCGACGACCACGGCTTCGCCGGTGGCG
CTAAAGGTGGGAGGGGCGAAGGAGGAGCAAGCTGTGTCGGCGGCGCCGAC
GGAAACTTCCAAGTTAGCGAGATCGCAGAGGTTAGTGCCGACGGACGACG
ACCGCACAGCCATCCCTCCTCCGCGGTCGGGGTCGGTGTTTCCGAAAAAC
GAGAAACCACAAGCTGGGAGCGCCTTCGAGGCGACGGAATTGGCGCCACA
GACCGTCCCGCGTCGCAACACCGTAGTGGGAGTTCCAGAGAACCGCAACG
ACAGCGGACAGAGGGGGACGCTCAACCTAGGCGCCGGTCGATTCTGGGGA
GGGTGATCTGGGGTCGGACCTTCGCCGCGAGAGGGAGACCAGACTCTCCG
CTGCGGGCAGCGCCAAGATGTCTCCGCGTCCCGCAGGCCCAGAACCGGAC
TGGCATATCAAGCTCGAGGAGGCGTCACGCCCCAGTGGTTTAGGCCCAGA
ACCGGACTGGCATATCAAGCTCGAGGAGGCGTCACGCCCCAGTGGTTTAG
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