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Homology
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: D7FSF1_ECTSI (Rab2A, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF1_ECTSI) HSP 1 Score: 413 bits (1062), Expect = 8.320e-135 Identity = 205/208 (98.56%), Postives = 207/208 (99.52%), Query Frame = 1
Query: 181 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVPPPAERSSCC 804
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNV PPA++SSCC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVAPPADKSSCC 208
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: A0A835Z1V8_9STRA (Rab2A, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V8_9STRA) HSP 1 Score: 360 bits (925), Expect = 1.600e-114 Identity = 179/197 (90.86%), Postives = 186/197 (94.42%), Query Frame = 1
Query: 181 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNN 771
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQP+HDLTIGVEFGARMI++D RQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDL RRAV+TKEGEQFA ENGLIFLETSAK A NVE AFI+TA KIY NI SGVYDPTNEAHG+KLGPAASLNY N
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPLHDLTIGVEFGARMINVDARQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLEHRRAVSTKEGEQFAAENGLIFLETSAKTAANVEAAFIQTAEKIYGNIQSGVYDPTNEAHGVKLGPAASLNYGN 197
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: A0A7S2CHD5_9STRA (Hypothetical protein n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A7S2CHD5_9STRA) HSP 1 Score: 350 bits (897), Expect = 1.840e-110 Identity = 175/208 (84.13%), Postives = 185/208 (88.94%), Query Frame = 1
Query: 181 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVPPPAERSSCC 804
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM++IDNRQ+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEA+QNSN NMVIMLIGNKSDL RRAV+TKEGEQFAEENGLIFLETSAK A NVE AFIKTA KIY+ ILSGVYD TNEAHGIK+G +N + +CC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDNRQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEAKQNSNPNMVIMLIGNKSDLDHRRAVSTKEGEQFAEENGLIFLETSAKTAANVEQAFIKTAEKIYEKILSGVYDVTNEAHGIKIGMNQHSGPDNNSGRSSNKACC 208
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: A0A7S2V0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L3_9STRA) HSP 1 Score: 347 bits (889), Expect = 8.390e-109 Identity = 174/192 (90.62%), Postives = 183/192 (95.31%), Query Frame = 1
Query: 181 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAAS 756
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+ID++Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TF+HLTRWLEEARQNSNSNMVIMLIGNKSDL RRAV+TKEGEQFAEENGLIFLETSAK A NVE AFIKTA KIY+NILSGVYD TNEAHGIK+G A S
Sbjct: 31 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDSKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFSHLTRWLEEARQNSNSNMVIMLIGNKSDLEHRRAVSTKEGEQFAEENGLIFLETSAKTAENVEAAFIKTAEKIYENILSGVYDVTNEAHGIKVGMAGS 222
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: M4B5K5_HYAAE (Uncharacterized protein n=26 Tax=Oomycota TaxID=4762 RepID=M4B5K5_HYAAE) HSP 1 Score: 344 bits (882), Expect = 2.990e-108 Identity = 175/211 (82.94%), Postives = 187/211 (88.63%), Query Frame = 1
Query: 181 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLN---YNNVPPPAERSSCC 804
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+I+N+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AF+KTA+KIY NI SGV D TNEAHGIK+G S + N PPA +S CC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIENKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSFKEGEQFAKENGLIFLETSAKTAANVEDAFVKTASKIYSNIQSGVCDVTNEAHGIKMGMTGSPGPGGFGNSNPPA-KSGCC 210
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: A0A6V1NY85_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NY85_HETAK) HSP 1 Score: 338 bits (866), Expect = 6.520e-106 Identity = 175/211 (82.94%), Postives = 185/211 (87.68%), Query Frame = 1
Query: 181 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVPPPAERS---SCC 804
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI ID+R++KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNK+DL RRAV+TKEGEQFAEENGLIFLETSAK A NVE AFIKTA KIY+NILSGVYD +E+ GIK+G + N A R SCC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMIDIDSRKIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKADLEHRRAVSTKEGEQFAEENGLIFLETSAKTAQNVEDAFIKTAEKIYENILSGVYDIQSESSGIKVGMSGGQG-GNAYGSANREGSKSCC 210
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: A0A485LBB8_9STRA (Aste57867_18783 protein n=7 Tax=Oomycota TaxID=4762 RepID=A0A485LBB8_9STRA) HSP 1 Score: 337 bits (863), Expect = 1.850e-105 Identity = 174/215 (80.93%), Postives = 184/215 (85.58%), Query Frame = 1
Query: 181 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASL-------NYNNVPPPAERSSCC 804
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDN+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AFIKTA KI+ NI +G+ D TNEAHGIK+G S N NN A + CC
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSYKEGEQFAKENGLIFLETSAKTAANVEDAFIKTAQKIHANIQAGICDVTNEAHGIKVGMTGSATPTGFGGNANN----ANKGGCC 211
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: A0A2D4BXC9_PYTIN (Rab2 family GTPase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXC9_PYTIN) HSP 1 Score: 339 bits (870), Expect = 1.440e-104 Identity = 173/207 (83.57%), Postives = 183/207 (88.41%), Query Frame = 1
Query: 181 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLN---YNNVPPPAER 792
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+IDN+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AF+KTAAKIY NI SGV D TNEAHGIK+G S + N PA +
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSYKEGEQFAKENGLIFLETSAKTAANVEDAFVKTAAKIYSNIQSGVCDVTNEAHGIKVGMTGSPGPGGFGNPNAPANK 207
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: A0A024UMG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UMG6_9STRA) HSP 1 Score: 335 bits (859), Expect = 1.890e-104 Identity = 173/216 (80.09%), Postives = 185/216 (85.65%), Query Frame = 1
Query: 178 RMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASL-------NYNNVPPPAERSSCC 804
RMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+ID++Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AFIKTA KI+ NI +G+ D TNEAHGIK+G S N NN A + CC
Sbjct: 28 RMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDSKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSYKEGEQFAKENGLIFLETSAKTAANVEDAFIKTAQKIHANIQAGICDVTNEAHGIKVGMTGSATPTGFGGNGNN----ANKGGCC 239
BLAST of mRNA_P-lacustris_contig982.16138.1 vs. uniprot
Match: A0A8J5J3E0_9STRA (SWIB/MDM2 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J3E0_9STRA) HSP 1 Score: 341 bits (875), Expect = 2.180e-103 Identity = 173/208 (83.17%), Postives = 185/208 (88.94%), Query Frame = 1
Query: 181 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISIDNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRWLEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSAKMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLN---YNNVPPPAERS 795
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI+I+N+Q+KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHLTRWLEEARQNSNSNM IMLIGNKSDL RRAV+ KEGEQFA+ENGLIFLETSAK A NVE AF+KTA+KIY NI SGV D TNEAHGIK+G S + N PPA R+
Sbjct: 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIENKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTRWLEEARQNSNSNMAIMLIGNKSDLEHRRAVSFKEGEQFAKENGLIFLETSAKTAANVEDAFVKTASKIYSNIQSGVCDVTNEAHGIKVGMTGSPGPGGFGNSNPPANRA 208
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 416.4 |
| Seed ortholog evalue | 7.9e-114 |
| Seed eggNOG ortholog | 2880.D7FSF1 |
| KEGG ko | ko:K07877 |
| KEGG Pathway | ko04152,map04152 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000139,GO:0000331,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0006970,GO:0008150,GO:0008219,GO:0009628,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0030587,GO:0031090,GO:0031164,GO:0031410,GO:0031982,GO:0031984,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0099120 |
| EggNOG free text desc. | GTPase activity |
| EggNOG OGs | COG1100@1,KOG0098@2759 |
| Ec32 ortholog description | Rab2A, RAB family GTPase |
| Ec32 ortholog | Ec-25_000850.1 |
| COG Functional cat. | F |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04031,ko04131,ko04147 |
| Exons | 6 |
| Model size | 3061 |
| Cds size | 627 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817414.499142-UTR-P-lacustris_contig982:49610..49790 | 1622817414.499142-UTR-P-lacustris_contig982:49610..49790 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig982 49611..49790 + |
| 1693495050.061014-UTR-P-lacustris_contig982:49610..49790 | 1693495050.061014-UTR-P-lacustris_contig982:49610..49790 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig982 49611..49790 + |
| 1622817414.5818594-UTR-P-lacustris_contig982:55840..58094 | 1622817414.5818594-UTR-P-lacustris_contig982:55840..58094 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig982 55841..58094 + |
| 1693495050.146564-UTR-P-lacustris_contig982:55840..58094 | 1693495050.146564-UTR-P-lacustris_contig982:55840..58094 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig982 55841..58094 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817414.511402-CDS-P-lacustris_contig982:49790..49836 | 1622817414.511402-CDS-P-lacustris_contig982:49790..49836 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 49791..49836 + |
| 1693495050.074225-CDS-P-lacustris_contig982:49790..49836 | 1693495050.074225-CDS-P-lacustris_contig982:49790..49836 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 49791..49836 + |
| 1622817414.522476-CDS-P-lacustris_contig982:52534..52674 | 1622817414.522476-CDS-P-lacustris_contig982:52534..52674 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 52535..52674 + |
| 1693495050.089318-CDS-P-lacustris_contig982:52534..52674 | 1693495050.089318-CDS-P-lacustris_contig982:52534..52674 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 52535..52674 + |
| 1622817414.536014-CDS-P-lacustris_contig982:53194..53344 | 1622817414.536014-CDS-P-lacustris_contig982:53194..53344 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 53195..53344 + |
| 1693495050.0976136-CDS-P-lacustris_contig982:53194..53344 | 1693495050.0976136-CDS-P-lacustris_contig982:53194..53344 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 53195..53344 + |
| 1622817414.5468092-CDS-P-lacustris_contig982:54341..54413 | 1622817414.5468092-CDS-P-lacustris_contig982:54341..54413 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 54342..54413 + |
| 1693495050.1146421-CDS-P-lacustris_contig982:54341..54413 | 1693495050.1146421-CDS-P-lacustris_contig982:54341..54413 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 54342..54413 + |
| 1622817414.5585065-CDS-P-lacustris_contig982:55206..55341 | 1622817414.5585065-CDS-P-lacustris_contig982:55206..55341 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 55207..55341 + |
| 1693495050.1287155-CDS-P-lacustris_contig982:55206..55341 | 1693495050.1287155-CDS-P-lacustris_contig982:55206..55341 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 55207..55341 + |
| 1622817414.5699754-CDS-P-lacustris_contig982:55756..55840 | 1622817414.5699754-CDS-P-lacustris_contig982:55756..55840 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 55757..55840 + |
| 1693495050.1372693-CDS-P-lacustris_contig982:55756..55840 | 1693495050.1372693-CDS-P-lacustris_contig982:55756..55840 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig982 55757..55840 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig982.16138.1 >prot_P-lacustris_contig982.16138.1 ID=prot_P-lacustris_contig982.16138.1|Name=mRNA_P-lacustris_contig982.16138.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=209bp
MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMISI DNRQMKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTRW LEEARQNSNSNMVIMLIGNKSDLTSRRAVTTKEGEQFAEENGLIFLETSA KMATNVETAFIKTAAKIYDNILSGVYDPTNEAHGIKLGPAASLNYNNVPP PAERSSCC* back to topmRNA from alignment at P-lacustris_contig982:49611..58094+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig982.16138.1 ID=mRNA_P-lacustris_contig982.16138.1|Name=mRNA_P-lacustris_contig982.16138.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=8484bp|location=Sequence derived from alignment at P-lacustris_contig982:49611..58094+ (Pleurocladia lacustris SAG_25_93) CAGTAGCCGCTGGAAGCTTATTGCAACATCGAACGGGAGTACAGAGGAAA
GCAACAGAGTTAGAGTTAGAGCTGCGAGCAAGAGGGAGGAGCTCAGGGAG
TAGCAGCGTGGGAAACGGAACCTGCCAGGGCCGGACGCACCCTTTAGGTT
GGGTGACTCCACACCTGCAAAAGCTGAAGGATGAGCTACGCATACCTGTT
CAAGTACATAATCATCGGAGATACCGGTAAGATGAGATCAGCTGTGGGAT
GGAAGAAGCCATGGCGTTGTGTGTGTGTTCGCCCCTCTCTCCACATCATT
GCCCACGAGCAACACTCACCCCTCTTGAAAAGGGTACTACTTGTTGCATG
TCTCTCTAACGACAACGCGGAAGCGAGATGCTTCGAGAAGCGTCGTTCAT
GAACAATGTGCCCGCTTCCTGAGCTCCTGAGGTTTGAGAAGTTATGTAGT
AGGGAGGAGCGAAGGCTCTCACTCGCGTACGTAGCGCGGCCAAGCGTTTA
CAATTCTGCCGCTTCCCGCCATGGGGGGGGTGACAGCAGTGGACAGTTTA
GCTAAACCAATTTTCAACTTGTGAGATACAGCGCACAACGATATCCTGGC
TTCGGCTGGGCGTGAAGTAACCCTTTTGCTGTACTCCGCTCTTTGCATCA
GTGGCTCCTTAGTTATGCATAAGTTGTGCGTCTGCCATAAGGATTTGTAG
AGAGGTTTGTGTTTGAGTTGCTTTGGGGGATCGCCGTTCTTCGATTTTTT
TTTTTTTGTCCCTTTCAACCCCTCTGGGATGCTGTGTTCTGAACAAATAA
AAAACAAAGGGGAGAGGTAGAAACGAGAGAGAAGTACACATTCTGGCCCG
AGGTGTACTTGTAGGGGCACAAGGTATCTAGTCCCAGGGGTCGTGACGAA
CGTCCTCGAAAGGCTGTGCTGTGTCTTTGGGTACTACGAATCAATGACGA
GTAGAAAAAAGATAATAGAAATGGAAGAGCGCGCTAGGCGCGCCTTCTCT
CGTTATCCAGGGCCTGCCAGCACTCTTTATTCAGTATAATAACAGATTAT
CAATTTTTTTAGCCTGAAGTCCCTGAGGCCCCTGGAGCATTTCTGTACGG
TTCTTCCTCCCGCATCCCCCAAATGCGAGCCCTTCGAGCTCAAAAACGCT
CTCTCTTTCGCGAGTTTGTCAGACCTGAGCAGCAAGCAAGCTGCTACCGC
TGCTGCTGTGTGTGTGCTCTGTGTATGTATATATGCGTGTGCAAAGCAGC
AGTTCATAGGCGAAGTGGATTTGTGTAAGTGCGGCCGAGCGAGCGAGTTG
ACCGTCGAAGCGCTTGTAGCAACTGACCTTGTACCACTCTGTGTGCGAGC
TTGTGGTTGATATGGGTGGCCATCTACGCGCGTGGATGTCCTCTCCAGTG
CTGTACGACTCCTGTGGACGTTGGGTTCAAGTTGGTTGTAACTTTCCCCT
CTACTAATGTAAAAAGAGATGATCACTTTGATGATCCCAGAAGGGTTCAG
AGACTTTGATTAACCCACAGACGCTGACGTCTTTTCATTGGCCGATCCGG
TTTAGCGCGGTTGATGCTATGCTAATCGAGAAACACAAACACAGCAGCAG
CGGGGCTACGTAAGAATCTCAAGCAGCCAAAGTAGTCCGAACCAAGCCAT
CGCAATCGTGATTCAGCATACCCATCAGCGAGGGGCATCGGTAGTAGACA
GCAGGTAGGTAACTCACAGGGTCAGACGTTGTTGAACTCGAAAGCGAAAC
ATTTTAGATAAATTGTGCTTTGGTGTGTGCGTCTGTATGTGTATGTGAAC
GAAACCGTACCGACGCCTTTTCTCTCACCCCATCCCTCCCATGGGCGCTC
CGCTGCTTCCAAGTAGTCAGCGTTTGTATAGTCGCCAGGTGCTGCCGCTG
GTGTTTCCGTTCACTCTGGTGTGGTGTTTGTCTGGTTTCCGTTCCGTGCT
TCTCGTTCGAAAACCAGCCAAGCCATCAGGCAAGCCATCAATTTGGTTTT
GTTCGTTTGCTCACACACACACATGATTCGGTTGCTGCCAACAAGCGGAG
AACGATTATTTCGCGATCGGGTTCATGTTATCCAGTTAAAAAATCAAGTG
AGGTCGAGACGTGGAATGCCCGTAGCCTTGTTCTCTTCCGGGGATGTTCC
TGTTTCCCCCCCCAAAACATGGGGCATGTATCCCCCCAAACCTTGTTGGG
GAGAGAGAGAGGCGGGGAGGAAACCGCACACCGATGAACGCACACTCACG
GGGCCCTGCTGAAGAATTAAGAACAGAATTAGGACAACGAAAATCGCCAA
CAAATCATCCTTGAGGTGAAGGCAGCCTGCTCTGTCGCCTGTGGACCAAC
ACTGCACGTTCGTCCTACAAGTATGGGGAGAGTGTAGCCTAAGGCTGACG
GTTTCGATGGTCGATGGGCAAGGCAGTTCTTGTGACTCTTTGTACCTCTC
CTACACTTCATTATGCTTTTTTTGTTCTGTCTATCGAAGTACAAGACAAC
GGCAAGCTTCGGCCTAAGCGCACGTATTGCAAAGGGTATCTCCAACGGAG
GCCCACTGCTAACCTCCGGCACCCGTCTTGCAGTCTGTTGCAGAGCAGAC
TACTTCAGAGCAGAGTGCCTTCACCGCGTTCGTTTGTTCGTTCGAGTTTG
GGGACAGCCGACCCATTCGTGTCGCCTCATGCGAATGCCAGCCAGGAGTA
GTGGTGCTTCAACGGCTCCGTGGAAATTTATATGAAATGCACACTGCTCA
CATTAAAAAGATTCGATTAAATGAAGCACACATCACCACATGCAGTAGTA
GCCTGTTCTACAGCACTTTACCGAAGTTTGTCATGCCAAGGAACTAGTGG
CCAAGCATGCGCATATGTGGAACACGCTTGTCCACAGCTCTCTGTGCAAC
ACGCTCGCTTCTTCCGCCGTCCAGGCGTCGGCAAGTCATGTTTGCTACTG
CAGTTCACCGACAAGCGGTTTCAGCCGGTGCACGACCTCACAATTGGCGT
AGAGTTTGGGGCGCGGATGATCAGCATCGACAACCGACAGATGAAGCTAC
AAATCTGGGATACGGTAAGTTAACAAGGGATTTTTTATTCTTGGTGTAGT
GGTAGAGGACCTCTCCGCTAGGGCGAGTTTTTTCTCTCCCTCGAGAAAAC
ATGTGTGCTGTTTTTTTCTTGTTTTTTTACAACGGTCATCCTGCTCCCGT
ACATACTTGAGGTCGCGTCCCAAGAGCGGTTGCACGTGACGACGTTGGCT
TGTCCCCTTCACTATCTGGTATTCTGGACGGTGTTACTCCCTCTCTCTCT
CTCTCTACCTTCCTTCCTTCGTTTTGTGTTTGTATCGACATTCTGCGGCG
TACTCCAATTTTCGGCCCAACATGATGTAAAGTGAAACGACGGAACACAA
GCGAGAGCCCACCCCAAGCAAGCGGAGAAAATGCTCTTCGGCTCCATCAC
ACTTCCATCCTAACCCCACCGCTGTCCCTAGCCCTAAACCCTACATCCGT
CAAAACAGGCTGAGGGAAAAGTCGTGTCGCCTCATTTCAGGACTCTTACG
CTACCAGTATCTTATCCCTAACCGGTGAATGCAGGCGGGGCAGGAGTCGT
TCCGGTCCATCACACGTTCGTACTACAGAGGCGCGGCCGGGGCGTTGCTG
GTGTACGACATCACGCGGCGAGACACTTTCAACCATCTCACGCGGTGGCT
GGAGGAGGCCAGGCAAAACTCGAACTCCAACATGGTGGGTGCTGAACAGC
CGACGCATGTAGCAAGCCCCCAACATTGACCCCTTATCGAGGACGCATGG
GGCTTCTGTGTATTGCTCAGAGGCGGCACGGAGGGGGTCATCCAATCCCA
GTATCATTACTTGAATCAGATTGAGAATCCAGCTTGTAGAGGTGGTCCGG
GAAGTTTCTTGAACGCAGGCGAGGCAGCTGTACACTGCTGCAGTACACAA
CTTGCACTGCCTCGCGTCATTGCGCCGTCTTTTGTCTTTTGTCGCAAATG
GCACGACTGTCTGCCTCGTCTTCTGACGTCGCTGTCTTCGGCACCTCGGT
TGTTTCGTCCGCGCTACTGGGCGACCCTGCTGTCCGTCGCCTCTGTCCCC
GCCTCCCGTTGACTACGGTTGGTGTTGCTGGTGGTGGTGCTACCCCGGGG
GCTGCCTTGTGATGCGCGGCGCCATTGGTTAACAAAACCCGCATGTTTCG
GCTTGGGAAACTCTTCTCCGAAACACGTTGGTTCGGCTTCGAACACGGAA
CGTTAACTGGCCGGCAACCACCGGACGGATTGCGGAATGGGCGGTTCGGT
TCATGCTCGGAACGTTTTGATCGACTGATGGGCTGACCTGTTTATCGGGG
CCTGTGGACGGCGCGGCTTTCAACGGATCTATTCCGTTTGTGGGGCGAAT
GGTATTAACGGAACGGGCCGATCCGTGCGGGCGGGCTTCACGACCTCACC
GTGAACGAATGGATCGGTGTAACCGGAATCAACGGACGGTCTCGAATAAA
TGGGGCTTTTGAATCATGGGGGTGATCCAAATCGACGGACTCATCATTCG
GTTGGATCGATATCAATGGGACCGGCGAATCGAATCAACCGATGGAATCA
AACGGGCTGATCGGATAAATGTGCCGACCGGCCGGATGGAACGAAACGGA
ATGCTTCCTTCGTATATGTGCTGCTCGTGCTACTTCCATGACGGCGCTGC
TGCTTTCTTATCGAAACTGGCTTGCTTGTAGGTGATCATGTTGATTGGCA
ACAAGTCTGACCTTACAAGCCGGCGGGCGGTAACGACGAAGGAGGGGGAA
CAGGTACGAAACGATGCCACTCGATTGTCCACGGTGTGAGGTGTTGTTGA
ATTATAGCTAAGCTAAACCTGTTGCCGTGTGTTGCGGTATCTCGATGGTG
TGCATACGGCGTGTGACGCGTCATGTTATGGTGTTGTATGCTTTTGATAC
GGGTTGCCATGGGAGGGGCACGGTATCGCAGGGTATGCATGTCATTTTTT
CGCAGTGCATGTAACGGTGAGTTTTGCGTCACGTTGTACGAGTGAAGTTC
GCGGTGAGTTACCGTATATGATCTGGGGATCCGGCATTTACCGCGTTACT
GTAGCATTGTTTACCGGAATTTGACGTGCGATCTCTCTTTCAATTAAGGA
TGATTAACGCATGTTTCGTTTCGGAAGGTGCGTGTCCCGGAAAGACACGT
TGGTTGCACAACGTTGTTCCTGTGAGATCATTTTTTTTGTCGCTCCGTTT
ACACCATCGTGGATACTACCGCCGTTTCCTTCCCGCTGTTGTGGTCACCC
GGTTTCAGCTTTTGGAAGAAAACAGTCTGATACATGGACGCTCTTCTTGT
TTTCTATTTCTTGCTTTGTTGCCGATGACTATGCGTACTGTATACACTAC
GGGAGCTTCGTCTCGGTCATGGATCCCTCTTGCGTGGGTCTGTTTCAATG
TAGCATAGCGGTTAGGCTGTGACTGGATATTTTGTCGCTCTGTTGGTCTC
GCGACCATATCTTGTCTGATGGCATTTTTTTCTTTTCGAATTTTCTGCGT
GTGTGTGTTTGTGTGTGTGTGTGGTCTGTTTTTTTTTTTTTTTCAGTTTG
CGGAAGAGAACGGGCTAATTTTCCTCGAGACGAGCGCAAAAATGGCCACG
AACGTGGAGACGGCGTTCATCAAGACGGCCGCGAAGATCTACGACAACAT
CCTCTCGGGCGTCTACGACCCGACCAACGAGGTACGGCACCGTATGTACG
CTGTTGCTCTGCTTTTGCTCTCTTCTTACGTTGGTGTTGGTGTTGTCGAT
GGTGTTGCTGGTGTCCGGTGTTGTTGTCGCCGTCGCTGCCGTCGTCTTTT
GGAGCAAGTTTGTCGTTCTACATATCATTTCCCCCCACTCACACACGATT
GCGCAGCGCGGCTTGTTTCCCATCTAAAGGCGTGGATGACGAGTACCCGA
GGGCACAGGGGACAAACCGTTCCGCCGTGGTCCTTCGAGGGCGAGTGCAA
GGCGGACGATCACGCTCGAGAATGATGAGTGCAACCTCAAACACCTTCAC
CGTTTGCCCTTCCTTATGAACCAACTTCACCCGTTGCTGCTGCTGATGCT
GCTGCTGCTGCTGCTGCTGCGTTGAAATTGAAACAATTTTGCAAAGGCAC
ACGGCATCAAGCTTGGACCCGCGGCGTCACTGAATTACAACAACGTACCC
CCTCCGGCCGAGAGGAGCAGCTGCTGCTGACGTTGCCGTCGTTGCGGGAC
TAGTGCCACGTCAGGGGAGATAGGATAGCGCAGCGGCAGGGAGTGGCGGG
GGTCTTCGATGAGCGATTTGGGGGATGGAAAATCCTCTTGACTGCTGTTG
TCGAGGCCGGCGGGAATGCTCTTTGATACGGCGGTTGGGGCGGGGTCTCC
GATTGGCGGGTTGGCGGCCGGTGGTATTTGCCAAACGTCAGCCTAGAGTG
TGGGGAACATTCAGTGTGGCAGTCCTTATCCCAATGTCGATGGGATATTG
CATATTGTTGAGTTATGATTGTTGACGATGTATGTAGTGCTTATCGTGTT
TGTTTTTTTCTGGCTTGCCAGCAGGCACTTGGTTCTACTAGTTTTTTGCA
GAGAAGGTGGCCCTTGATTGGTTGCGACATGTTTTGGGCACTTTGTGTCA
TTATTTCGTGTGTACCACACGGGTCTAATCTGTCTTCGGCGCGGAGGGTT
GAAAGGACAGGTTTCGTACAACTGTAAGGTAGGCACGCTCAAGGAGGAGG
GAGGCATGTTGTTGGCGGAGCCTTTTTTAGCAAGACGACAGCCCAGCGGC
GGCAGGGAGAAGCTTGAGACTGCTTGGCGATTGGGCCAACTTGAACGAAA
GGCTGACAAGAGTGCCAACCCTGTCCCGCCCGCGCTGTTATTGTACGTTG
ATGAGGGTTTTGAATTGCGAGCTGATCGGCATGTGTCACGGAAGCCAATG
CGGGCCTGGTGGCATCCGGTATCCATGGTTAGCCCCGAAAGGCTTGCTAT
ATGTACCAACAACAGCCAGAGTTGCAATCGGTTTTTCGGGCCTGAAAGTG
GGTGTGCCCGCTCTCTCGCCTCGCCTTTCCTTGATACGACCGTTGGTCTC
TCGTCCCTATGGTAGCGAAGGTTCCACAACGGATGTTAACGTGTCAGGCG
TGACGTGCCGGCACTTCGCGCTTCGCCCACATTTCAAGATTGAGGGCTAC
GTAGATTGAGCGAGGGCAGTACCCGGGAGGCACAACCACCCAACACCAGC
GTACGTACCGTAGGGCCCGCATGGCCGCTTTGTGAGAGGGAGGCACCAAC
ATCGCATGCCCTACGAAAGCGTGACGGAACACGTCGAGGTTTTTTGTTTT
TCGCCGGGTGGCGACAGAAGGCTCTCCGGCTTTCCTTCTTCTGTTATATC
CGATAGTGCTGGTCGGATGGTTGATGAGGTTAATTAAGGCTGTGTCCTCC
ATGTTATTGTCTGCTCCGGTAGCCTCCGAAAACGACCAAGTGGTGCTGGG
AAAGGTATTCACGGCAACTGGCCGATAAATGGGTGTTGATGTATGAGCAC
GCTTGCCCGTGGTTGTCTGAACGGGGCGGCGTACTCGGGGTGAGCTTTGC
TCTCGGAGGTTGCGGAGATTGCGGGTGTTGAGAGTAAGCGCGTGCCGTCG
CTTGAGTGTTTCCCCCCTTTTCCCCATAACCACGACCATGACATGACCAT
GACCATGAGTTGGTTTCTTTTCCTGTTGTAGCAAGTGTTTTGGAGAATAA
CATAGAACGTCACGAAACAAGCACCGCAGATCGAAAAATGAAAAATTAAG
GAGAAGAGGGATGGGGCTTTGAATATCTCTCGCGCTTTTCGATCGCTGTC
GTATCTGGCCGTAGCCCCGCCCCACCCCCCACGCCAGCAGAATGCAAGGG
AAGAATCTCAACCTCCGAGCGGTTCGATTTTTTCATTGTGTCGTATCATC
CTAGTTTGTTGTTTTTCACCGAATATGGTAGAGAAGCGAGTGAAGGAGAT
CTGGTTCATGGATTGGCGAAAGACAGGAGGGAGGGCCGTACACACTGTTT
TCGTTTTCGTGTTCTTCCGCTAACCCTATTGTGTGATGCGTGGTTTCAAC
CGGGTTGGTTTTGTGTACGAAGCATGTGGACTCATTTGGCACCCCAGGCG
GAGGCGCGTTTGTTTGCTTCGCGATCTCTCAAGAAAGGTTCCCCTTCTTT
TCATTCCTGGGAGAGAAAAAAACAAACAAAATCTTGATTGGGAGAAGAAG
GTGCGGCATGCGTTAGTTCTCTATGAACTCCCATCGACCTCCGGTTGGTT
CAGGCGACAGCGTCGAAGGACACAGAGCAGGCTAGCATGCATACATAACG
CTTTCTTCACGCTTCGGGGTTAACTTGAATAATATTGTTTCTTCTTCGAA
TTAGGCAATCAGGTGGTGCCAGGCTGGCAAACACCACTGAAAAAAAAACT
TGGACCGTCACGATATGAATGAACCCATTGCAAC back to topCoding sequence (CDS) from alignment at P-lacustris_contig982:49611..58094+ >mRNA_P-lacustris_contig982.16138.1 ID=mRNA_P-lacustris_contig982.16138.1|Name=mRNA_P-lacustris_contig982.16138.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1254bp|location=Sequence derived from alignment at P-lacustris_contig982:49611..58094+ (Pleurocladia lacustris SAG_25_93) ATGAGCTACGCATACCTGTTCAAGTACATAATCATCGGAGATACCGATGA GCTACGCATACCTGTTCAAGTACATAATCATCGGAGATACCGGCGTCGGC AAGTCATGTTTGCTACTGCAGTTCACCGACAAGCGGTTTCAGCCGGTGCA CGACCTCACAATTGGCGTAGAGTTTGGGGCGCGGATGATCAGCATCGACA ACCGACAGATGAAGCTACAAATCTGGGATACGGCGTCGGCAAGTCATGTT TGCTACTGCAGTTCACCGACAAGCGGTTTCAGCCGGTGCACGACCTCACA ATTGGCGTAGAGTTTGGGGCGCGGATGATCAGCATCGACAACCGACAGAT GAAGCTACAAATCTGGGATACGGCGGGGCAGGAGTCGTTCCGGTCCATCA CACGTTCGTACTACAGAGGCGCGGCCGGGGCGTTGCTGGTGTACGACATC ACGCGGCGAGACACTTTCAACCATCTCACGCGGTGGCTGGAGGAGGCCAG GCAAAACTCGAACTCCAACATGGCGGGGCAGGAGTCGTTCCGGTCCATCA CACGTTCGTACTACAGAGGCGCGGCCGGGGCGTTGCTGGTGTACGACATC ACGCGGCGAGACACTTTCAACCATCTCACGCGGTGGCTGGAGGAGGCCAG GCAAAACTCGAACTCCAACATGGTGATCATGTTGATTGGCAACAAGTCTG ACCTTACAAGCCGGCGGGCGGTAACGACGAAGGAGGGGGAACAGGTGATC ATGTTGATTGGCAACAAGTCTGACCTTACAAGCCGGCGGGCGGTAACGAC GAAGGAGGGGGAACAGTTTGCGGAAGAGAACGGGCTAATTTTCCTCGAGA CGAGCGCAAAAATGGCCACGAACGTGGAGACGGCGTTCATCAAGACGGCC GCGAAGATCTACGACAACATCCTCTCGGGCGTCTACGACCCGACCAACGA GTTTGCGGAAGAGAACGGGCTAATTTTCCTCGAGACGAGCGCAAAAATGG CCACGAACGTGGAGACGGCGTTCATCAAGACGGCCGCGAAGATCTACGAC AACATCCTCTCGGGCGTCTACGACCCGACCAACGAGGCACACGGCATCAA GCTTGGACCCGCGGCGTCACTGAATTACAACAACGTACCCCCTCCGGCCG AGAGGAGCAGCTGCTGCTGAGCACACGGCATCAAGCTTGGACCCGCGGCG TCACTGAATTACAACAACGTACCCCCTCCGGCCGAGAGGAGCAGCTGCTG CTGA back to top
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