mRNA_P-lacustris_contig981.16136.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig981.16136.1
Unique NamemRNA_P-lacustris_contig981.16136.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig981.16136.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.300e-20
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 2 
Query:  179 KKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQ 352
            KKATA VS+GVQ VPP+TMRAIVQTFESSM+ AAMISSGQGAVLGNPQAVRQPAVRS+
Sbjct:  499 KKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVRSE 556
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BLAST of mRNA_P-lacustris_contig981.16136.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.060e-19
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 2 
Query:  179 KKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSSSSMAGRR 394
            K+  A VSAGV+ VPP+T+RAIV+TFESS++ AA ISSGQG VLGNPQAVRQPA RSQG R KSS    G R
Sbjct:  345 KRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVRQPAKRSQGARAKSSLEYGGAR 416
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BLAST of mRNA_P-lacustris_contig981.16136.1 vs. uniprot
Match: A0A6H5JBU5_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.160e-18
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 MVAL-NHSMSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQNRRLLYVEMLKEGHRDRERWGA 213
            MVAL N   SKDDQVR PT  VG TWQAIPENATIE RLQ +AQTGQ+ Q+RRLL+VEMLK+    RE WGA
Sbjct:  431 MVALVNSDASKDDQVRPPTAMVGDTWQAIPENATIETRLQRVAQTGQSSQDRRLLFVEMLKKTT-CRELWGA 501
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BLAST of mRNA_P-lacustris_contig981.16136.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 6.080e-10
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:  173 C*KKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSS 373
            C K+ATA VS GV+TVPPE +RA+V+ F+  +H A+ I S  G  + NP  VR P  R  G R+++S
Sbjct:   44 CLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRAS 110
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BLAST of mRNA_P-lacustris_contig981.16136.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.650e-9
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:  173 C*KKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSS 373
            C K+ATA VS GV+TVPPE +RA+VQ F+  +H A+ I S  G  + NP  VR P  R  G R+++S
Sbjct:  344 CLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVVRPPTSRDTGKRKRAS 410
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BLAST of mRNA_P-lacustris_contig981.16136.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 8.660e-9
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:  173 C*KKATATVSAGVQTVPPETMRAIVQTFESSMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSS 373
            C K+ATA VS GV+TVPPE +RA+V+ F+  +H A+ I S  G  + NP  VR P  R  G R+++S
Sbjct:  789 CLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRAS 855
[Close]
BLAST of mRNA_P-lacustris_contig981.16136.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.650e-7
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:  173 C*KKATATVSAGVQTVPPETMRAIVQTFES-SMHTAAMISSGQGAVLGNPQAVRQPAVRSQGTREKSS 373
            C K+ATA VS GV+TVPPE +RA+V+ F+   +H A+ I S  G  + NP  VR P  R  G R+++S
Sbjct:  143 CLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRAS 210
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig981.16136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JWW3_9PHAE1.300e-2087.93MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JU34_9PHAE6.060e-1969.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBU5_9PHAE2.160e-1870.83SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JCK5_9PHAE6.080e-1047.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FLA8_ECTSI1.650e-949.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJG6_9PHAE8.660e-947.76SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JMX3_9PHAE1.650e-747.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig981contigP-lacustris_contig981:76544..76954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817414.3531423-CDS-P-lacustris_contig981:76543..767711622817414.3531423-CDS-P-lacustris_contig981:76543..76771Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 76544..76771 +
1693495049.9553561-CDS-P-lacustris_contig981:76543..767711693495049.9553561-CDS-P-lacustris_contig981:76543..76771Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 76544..76771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817414.3642333-UTR-P-lacustris_contig981:76771..769541622817414.3642333-UTR-P-lacustris_contig981:76771..76954Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 76772..76954 +
1693495049.9671683-UTR-P-lacustris_contig981:76771..769541693495049.9671683-UTR-P-lacustris_contig981:76771..76954Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 76772..76954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig981.16136.1prot_P-lacustris_contig981.16136.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig981 76544..76771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig981.16136.1

>prot_P-lacustris_contig981.16136.1 ID=prot_P-lacustris_contig981.16136.1|Name=mRNA_P-lacustris_contig981.16136.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=76bp
MVALNHSMSKDDQVRAPTVPVGSTWQAIPENATIECRLQTMAQTGQTDQN
RRLLYVEMLKEGHRDRERWGADGSS*
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mRNA from alignment at P-lacustris_contig981:76544..76954+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig981.16136.1 ID=mRNA_P-lacustris_contig981.16136.1|Name=mRNA_P-lacustris_contig981.16136.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=411bp|location=Sequence derived from alignment at P-lacustris_contig981:76544..76954+ (Pleurocladia lacustris SAG_25_93)
ATGGTTGCGCTAAACCACAGCATGTCCAAGGACGACCAGGTACGCGCTCC
CACTGTCCCGGTCGGTAGCACTTGGCAAGCAATCCCGGAGAACGCCACCA
TAGAGTGTAGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAGAAC
CGCCGGCTCCTTTACGTGGAGATGTTAAAAGAAGGCCACCGCGACCGTGA
GCGCTGGGGTGCAGACGGTTCCTCCTGAGACTATGCGTGCCATCGTACAG
ACTTTCGAAAGTAGCATGCACACCGCGGCGATGATTTCGTCGGGGCAGGG
GGCTGTACTTGGCAACCCACAAGCTGTACGCCAACCAGCTGTTAGAAGTC
AAGGTACTAGAGAGAAGTCGAGCTCGAGTATGGCGGGCCGGCGTCTAGGA
GACGCGCGCAG
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Coding sequence (CDS) from alignment at P-lacustris_contig981:76544..76954+

>mRNA_P-lacustris_contig981.16136.1 ID=mRNA_P-lacustris_contig981.16136.1|Name=mRNA_P-lacustris_contig981.16136.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=456bp|location=Sequence derived from alignment at P-lacustris_contig981:76544..76954+ (Pleurocladia lacustris SAG_25_93)
ATGGTTGCGCTAAACCACAGCATGTCCAAGGACGACCAGGTACGCGCTCC
CACTGTCCCGGTCGGTAGCACTTGGCAAGCAATCCCGGAGAACGCCACCA
TAGAGTGTAGGTTGCAGACCATGGCGCAGACAGGGCAAACAGATCAGAAC
CGCCGGCTCCTTTACGTGGAGATGTTAAAAGAAGGCCACCGCGACCGTGA
GCGCTGGGGTGCAGACGGTTCCTCCTGAATGGTTGCGCTAAACCACAGCA
TGTCCAAGGACGACCAGGTACGCGCTCCCACTGTCCCGGTCGGTAGCACT
TGGCAAGCAATCCCGGAGAACGCCACCATAGAGTGTAGGTTGCAGACCAT
GGCGCAGACAGGGCAAACAGATCAGAACCGCCGGCTCCTTTACGTGGAGA
TGTTAAAAGAAGGCCACCGCGACCGTGAGCGCTGGGGTGCAGACGGTTCC
TCCTGA
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