mRNA_P-lacustris_contig981.16135.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig981.16135.1
Unique NamemRNA_P-lacustris_contig981.16135.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig981.16135.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 4.370e-11
Identity = 32/56 (57.14%), Postives = 36/56 (64.29%), Query Frame = 3 
Query:    6 FVRWPVRGENSEHPYLSDMNNLEHNHPVEKDAVDEVRRQNKPLDTPTKEACEALTG 173
            ++RWPV   N     +     L HNHPV K  VDEVRRQ KPLDTPTK+AC  LTG
Sbjct:  251 YIRWPVNVGNKHPDPILSFKELNHNHPVNKGVVDEVRRQTKPLDTPTKDACVKLTG 306
[Close]
BLAST of mRNA_P-lacustris_contig981.16135.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.580e-7
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:  170 RRKTMYDANELLQKVKDATADGGKYLLKM 256
            RR+T YDANELLQ+VKDATADGGKYLLKM
Sbjct:   58 RRRTPYDANELLQRVKDATADGGKYLLKM 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig981.16135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU34_9PHAE4.370e-1157.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWW3_9PHAE1.580e-789.66MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig981contigP-lacustris_contig981:73204..74265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size257
Cds size156
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig981.16135.1prot_P-lacustris_contig981.16135.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig981 73263..74223 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817413.5213718-UTR-P-lacustris_contig981:73203..732621622817413.5213718-UTR-P-lacustris_contig981:73203..73262Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 73204..73262 +
1693495049.2620625-UTR-P-lacustris_contig981:73203..732621693495049.2620625-UTR-P-lacustris_contig981:73203..73262Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 73204..73262 +
1622817413.5661354-UTR-P-lacustris_contig981:74223..742651622817413.5661354-UTR-P-lacustris_contig981:74223..74265Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 74224..74265 +
1693495049.2982526-UTR-P-lacustris_contig981:74223..742651693495049.2982526-UTR-P-lacustris_contig981:74223..74265Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 74224..74265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817413.531757-CDS-P-lacustris_contig981:73262..733741622817413.531757-CDS-P-lacustris_contig981:73262..73374Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 73263..73374 +
1693495049.2713652-CDS-P-lacustris_contig981:73262..733741693495049.2713652-CDS-P-lacustris_contig981:73262..73374Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 73263..73374 +
1622817413.5411625-CDS-P-lacustris_contig981:73725..737651622817413.5411625-CDS-P-lacustris_contig981:73725..73765Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 73726..73765 +
1693495049.2816627-CDS-P-lacustris_contig981:73725..737651693495049.2816627-CDS-P-lacustris_contig981:73725..73765Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 73726..73765 +
1622817413.551526-CDS-P-lacustris_contig981:74219..742231622817413.551526-CDS-P-lacustris_contig981:74219..74223Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 74220..74223 +
1693495049.2897809-CDS-P-lacustris_contig981:74219..742231693495049.2897809-CDS-P-lacustris_contig981:74219..74223Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 74220..74223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig981.16135.1

>prot_P-lacustris_contig981.16135.1 ID=prot_P-lacustris_contig981.16135.1|Name=mRNA_P-lacustris_contig981.16135.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=52bp
MNNLEHNHPVEKDAVDEVRRQNKPLDTPTKEACEALTGGKRCTTLTSCCK
R*
back to top

mRNA from alignment at P-lacustris_contig981:73204..74265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig981.16135.1 ID=mRNA_P-lacustris_contig981.16135.1|Name=mRNA_P-lacustris_contig981.16135.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1062bp|location=Sequence derived from alignment at P-lacustris_contig981:73204..74265+ (Pleurocladia lacustris SAG_25_93)
AGGTATTCGTCCGGTGGCCGGTTCGAGGTGAGAATAGCGAGCACCCGTAC
CTGAGCGACATGAACAACTTGGAGCACAACCACCCGGTGGAGAAGGATGC
TGTTGATGAAGTTCGTCGGCAGAATAAGCCTTTGGACACCCCGACGAAGG
AAGCGTGTGAGGCGCTCACAGGCGAGTGTTGAGGCAGGATGTGTGTGTTT
TGTGTTCCTGGTACTTTTGTATAGGCGATACATGTGCAAGTACTACGTGT
TAGGATCGGACGAGTGTTAACTTCTGGTGTGGAGAGGAAGACGCAGCACG
AAAGTAACAGCAGTGTTGCTATAGTGCATTGCTGTGTTGAGCACAACTTA
CGCTTTTGCTGCTCATGACCGTGCAGCATGAACCCATTTTCGTTTTGTTT
GGTTGTTGTTTTCGTAACAGATGCGGGCTTCAAGCCAGCGGTTCAAAGCA
AGATGCTCCAAGCTCTCACCGGTGAACGCCCAAACCCCGTGCCATCCGGA
ATGCTGCTGCTGCGCATGCAAGGCGGAAAACGATGTACGACGCTAACGAG
CTGCTGCAAAAGGTAAGGACGATGCCTGCGACGTTCTCCATGCCTATGAC
ATTGGTTGCGTTAGATGTGCTCCGTGGATGTGTGGATTGACTTATGGTCA
TGGCACAGTTTCTCAATAGACATGTTCTCGGTTGAAGAAGTCCCTCCAGC
CAGATAGGAACACGCTTCTGGCACTGCAGAGGAGAGAAGTGTAGGGGCGA
CCTACGCTGGTAGGGGGCGCATGTTCTATGCCGCTGTATGCGGGGAGTGT
GGAGATGGGATAATGGGGAATAGACACGGGGGCTGGCAGAGGCAGTCGGT
CCGTTAGTTGCTTGCCCCAGTCGCCCCCTGCCCCTCCGCCCCCTTTCTTT
GAGGCTTACGCATTCGTACGCCATAAACACTCGCGCCTCAACAGAACATG
GAGCAGCAGAGCACCCCGTTTCAAATGCATCTGAACCTCATACCTACCAA
TCTCAACTCCCCGCAGGTGAAGGACGCGACTGCAGACGGAGGGAAGTACC
TCCTAAAGATGG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig981:73204..74265+

>mRNA_P-lacustris_contig981.16135.1 ID=mRNA_P-lacustris_contig981.16135.1|Name=mRNA_P-lacustris_contig981.16135.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=312bp|location=Sequence derived from alignment at P-lacustris_contig981:73204..74265+ (Pleurocladia lacustris SAG_25_93)
ATGAACAACTTGGAGCACAACCACCCGGTGGAGAAGGATGCTGTTGATGA
AGTTCGTCGGCAGAATAAGCCTTTGGACACCCCGACGAAGGAAGCGTGTG
AGGCGCTCACAGATGAACAACTTGGAGCACAACCACCCGGTGGAGAAGGA
TGCTGTTGATGAAGTTCGTCGGCAGAATAAGCCTTTGGACACCCCGACGA
AGGAAGCGTGTGAGGCGCTCACAGGCGGAAAACGATGTACGACGCTAACG
AGCTGCTGCAAAAGGCGGAAAACGATGTACGACGCTAACGAGCTGCTGCA
AAAGGTGAGTGA
back to top