mRNA_P-lacustris_contig981.16132.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig981.16132.1
Unique NamemRNA_P-lacustris_contig981.16132.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig981.16132.1 vs. uniprot
Match: A0A6H5KN83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN83_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 9.560e-134
Identity = 236/352 (67.05%), Postives = 261/352 (74.15%), Query Frame = 3 
Query:   21 MSAVDYSKWDKMANEMSDSDDDHGNNPEVTTFDEPQSVTFGGTPAS--AEVWTDTSD-TGHHP--TPSSPHVEAPIDGFAGAAAEAGGTASAASPRPKIHEPVSNEQLAENGAAVHRDDNDGRQVLHYVWRQAREEVAVVVPVPSGTRAADVEVSLTAKPETVTEGVADLLRVSVKASSGV-GIASGAAGDDVAAPGVGAGMLHVLEGELAFQVKLGEEGEGEVDWELKDYPGTVVTRDCP-VDGEDAGGTPAAATAAAAGSGEGFIARRSGSNGDRRGVEVVLRKHCPVSNAAVWWKSLLKGGPEIDVSAIKGRATNEHQSVWEEALGMFKEKVASRKSQEKISVDMGGGD 1055
            MS VDYSKWDKMA+EMSDSDDD+GNNPEVTTFD+PQSVTFGGT AS  AE W   SD +G HP  TPSS  V AP DG  GA A A   A+  +P P++   +S+E+L ENGAAV  D N GRQ L YVWRQ R EV VVVPVP+GTRA DVEVSL AKPET+ EGVADL+RV+VKA+ G  G AS   G    APG G  ++ VLEGELAFQ KLG E EGEV+WELKDYPGT V RD P   G+  G  P  A AA      G     S SNGDRRGVE+VL+KHCPV NAAVWWKSLLKGGPEIDV+AIKGRATN HQSVWEEALGMFKE+VA+RK Q KISVDM  GD
Sbjct:    1 MSGVDYSKWDKMASEMSDSDDDNGNNPEVTTFDQPQSVTFGGTSASQAAEGWDGASDDSGAHPDTTPSSSGVAAPADGSTGAVAAA---ATGTTPTPQVKPLISDERLTENGAAVRGDANAGRQALQYVWRQTRAEVVVVVPVPAGTRAGDVEVSLRAKPETIAEGVADLIRVAVKATRGRDGAASRELGTAATAPGGGTKLVPVLEGELAFQAKLGAEDEGEVEWELKDYPGTAVARDDPDSSGDPVGSAPPPAPAA------GAREASSSSNGDRRGVEIVLKKHCPVPNAAVWWKSLLKGGPEIDVAAIKGRATNNHQSVWEEALGMFKEQVAARKGQPKISVDMEEGD 343
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BLAST of mRNA_P-lacustris_contig981.16132.1 vs. uniprot
Match: A0A836CJH1_9STRA (CS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.000e-29
Identity = 114/344 (33.14%), Postives = 154/344 (44.77%), Query Frame = 3 
Query:   30 VDYSKWDKMANEMSDSDDDHGNN-PEVTTFDEPQSVTFGGTPASAEVWTDTSDTGHHPTPSSPHVEAPIDGFAGAAAEAGGTASAASPRPKIHE-PVSNEQLAENGAAVHRDDNDGRQVLHYVWRQAREEVAVVVPVPSGTRAADVEVSLTAKPETVTEGVADLLRVSVKASSGVGIASGAAGDDVAAPGVGAGMLHVLEGELAFQVKLGEEGEGEVDWELKDYPGTVVTRDCPVDGEDAGGTPAAATAAAAGSGEGFIARRSGSNGDRRGVEVVLRKHCPVSNAAVWWKSLLKGGPEIDVSAIKGR---ATNEHQSVWEEALGMFKEKVASRKSQEKISVDMG 1046
            VDYSKWDKMA +MSDS+D+ G + P VT FD P SVT+GG            D                       + AG   +  S R  + + P     L  NGAAV  D         Y W Q+R +VA+ V  P GTRA++VEV +T+     T      L   +K S     A GA                +LEG+L + V L  +    VDW L+D                  G PA     +A   +   A +S      R + V LRKH P++ AA+WWK  +KGGP ID++AI+GR     +  Q VW+EA+  F+ +V   K  E+  VD+G
Sbjct:    2 VDYSKWDKMAADMSDSEDEEGGSKPVVTAFDNPTSVTWGG-----------GDAPEEERLXXXXXXXXXXXXXXXXSSAGTPGADDSKRAALTDKPARLLTLTRNGAAVQDDCG----AYTYFWSQSRGDVAITVVAPPGTRASEVEVKVTSDASAPTLAAQAPLGHHLKVS-----AKGAI---------------LLEGDLTYPVALDPDDPESVDWVLQDL-----------------GLPARPAPESAVESDVSTADQSSERSPARAITVTLRKHSPIAGAALWWKGAVKGGPTIDMAAIEGRDAKGASASQKVWDEAMEGFRARVKQLKL-ERTEVDIG 292
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BLAST of mRNA_P-lacustris_contig981.16132.1 vs. uniprot
Match: A0A7S0KK22_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KK22_9CHLO)

HSP 1 Score: 65.1 bits (157), Expect = 1.270e-7
Identity = 68/259 (26.25%), Postives = 106/259 (40.93%), Query Frame = 3 
Query:  324 QLAENGAAVHRDDNDGRQVLHYVWRQAREEVAVVVPVPSGTRAADVEVSLTAKPETVTEGVADLLRVSVKASSGVGIASGAAGDDVAAPGVGAGMLHVLEGELAFQV--KLGEEGEGEV---------DWELKDYPGTVVTRDCPVDGEDAGGTPAAATAAAAGSGEGFIARRSGSNGDRRGVEVVLRKHCPVSNAAV-WWKSLLKGGPEIDVSAIKGRAT---NEHQSVWEEALGMFKEKVASRKSQEKISVDMGGGD 1055
            +++ NG  V R+D DG   + Y WRQ  +E    V V   T+A DV V ++A+           +++SV    G                    +  V  GE A ++  +  +E E ++         DWE+ D+ G          G+DA                            RR V V +RK    S+  V WW+S +KGGPE+D    + R+    ++ Q+ W +A  MF+E++A+R   E I VD    D
Sbjct:  131 EMSRNGGVV-REDGDG--AVRYFWRQDAKEATASVVVAPKTKAKDVRVDVSARE----------VKISVMKDGGE-------------------IREVFRGEWAHEIAEEPRDEDEDDIGCRAAPTFGDWEITDFEGH---------GDDA----------------------------RRVVRVTVRKKS--SDMLVHWWRSCVKGGPEVDPMTFEDRSATKASQAQTTWAQAQAMFRERIANR---EMIEVDAHTSD 315
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig981.16132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KN83_9PHAE9.560e-13467.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJH1_9STRA2.000e-2933.14CS domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S0KK22_9CHLO1.270e-726.25Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig981contigP-lacustris_contig981:36568..38758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score62.0
Seed ortholog evalue6.3e-07
Seed eggNOG ortholog5811.TGME49_057310
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CS domain
EggNOG OGs2E6HQ@1,2SD7A@2759,3YAZ6@5794,3YKNC@5796,3YR8G@5809
COG Functional cat.S
Best tax levelSarcocystidae
Best eggNOG OGNA|NA|NA
Exons1
Model size2191
Cds size1038
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig981.16132.1prot_P-lacustris_contig981.16132.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig981 36588..37625 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817413.9879408-UTR-P-lacustris_contig981:36567..365871622817413.9879408-UTR-P-lacustris_contig981:36567..36587Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 36568..36587 +
1693495049.6138854-UTR-P-lacustris_contig981:36567..365871693495049.6138854-UTR-P-lacustris_contig981:36567..36587Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 36568..36587 +
1622817414.0114217-UTR-P-lacustris_contig981:37625..387581622817414.0114217-UTR-P-lacustris_contig981:37625..38758Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 37626..38758 +
1693495049.6470628-UTR-P-lacustris_contig981:37625..387581693495049.6470628-UTR-P-lacustris_contig981:37625..38758Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig981 37626..38758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817414.0009263-CDS-P-lacustris_contig981:36587..376251622817414.0009263-CDS-P-lacustris_contig981:36587..37625Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 36588..37625 +
1693495049.631603-CDS-P-lacustris_contig981:36587..376251693495049.631603-CDS-P-lacustris_contig981:36587..37625Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig981 36588..37625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig981.16132.1

>prot_P-lacustris_contig981.16132.1 ID=prot_P-lacustris_contig981.16132.1|Name=mRNA_P-lacustris_contig981.16132.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=346bp
MSAVDYSKWDKMANEMSDSDDDHGNNPEVTTFDEPQSVTFGGTPASAEVW
TDTSDTGHHPTPSSPHVEAPIDGFAGAAAEAGGTASAASPRPKIHEPVSN
EQLAENGAAVHRDDNDGRQVLHYVWRQAREEVAVVVPVPSGTRAADVEVS
LTAKPETVTEGVADLLRVSVKASSGVGIASGAAGDDVAAPGVGAGMLHVL
EGELAFQVKLGEEGEGEVDWELKDYPGTVVTRDCPVDGEDAGGTPAAATA
AAAGSGEGFIARRSGSNGDRRGVEVVLRKHCPVSNAAVWWKSLLKGGPEI
DVSAIKGRATNEHQSVWEEALGMFKEKVASRKSQEKISVDMGGGD*
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mRNA from alignment at P-lacustris_contig981:36568..38758+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig981.16132.1 ID=mRNA_P-lacustris_contig981.16132.1|Name=mRNA_P-lacustris_contig981.16132.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2191bp|location=Sequence derived from alignment at P-lacustris_contig981:36568..38758+ (Pleurocladia lacustris SAG_25_93)
TCTATCCTGAAAGAAAACCCATGAGTGCTGTGGACTACTCTAAGTGGGAC
AAGATGGCGAATGAGATGAGCGACAGCGATGATGACCACGGCAACAATCC
GGAGGTGACCACTTTCGATGAGCCTCAGTCAGTAACCTTCGGCGGTACAC
CAGCGTCTGCCGAAGTTTGGACTGATACCAGCGATACCGGTCACCACCCC
ACCCCAAGCTCTCCTCATGTTGAAGCTCCAATAGATGGATTCGCTGGAGC
GGCGGCGGAGGCAGGGGGTACCGCGAGCGCCGCCTCGCCTCGGCCTAAGA
TCCACGAGCCTGTCAGCAACGAGCAGCTCGCAGAGAACGGCGCGGCTGTG
CATCGCGACGACAACGACGGTCGACAGGTCCTGCATTACGTATGGCGGCA
AGCGAGAGAAGAGGTCGCGGTTGTAGTCCCGGTACCGTCGGGGACTCGTG
CGGCAGATGTGGAGGTTTCACTGACGGCAAAACCGGAGACAGTCACAGAG
GGAGTTGCTGACCTCCTTAGAGTGTCTGTCAAGGCAAGCAGCGGGGTTGG
TATTGCTAGCGGGGCGGCCGGGGATGATGTTGCGGCGCCGGGGGTGGGGG
CGGGCATGCTGCATGTGCTCGAAGGGGAGCTCGCGTTCCAGGTGAAACTG
GGAGAGGAAGGCGAAGGCGAGGTGGATTGGGAGCTCAAAGACTACCCGGG
AACGGTGGTAACCAGAGATTGCCCGGTTGACGGTGAGGATGCTGGTGGTA
CGCCAGCAGCAGCAACAGCAGCAGCAGCAGGGAGCGGAGAAGGATTCATC
GCGAGAAGAAGCGGcaGCAATGGCGATCGGCGAgGGGTTGAAGTAGTCCT
GAGGAAACACTGTCCCGTTTCTAACGCAGCGGTGTGGTGGAAATCTTTGC
TGAAGGGAGGGCCGGAGATCGACGTCTCCGCGATCAAGGGGAGGGCGACC
AACGAACACCAGTCGGTTTGGGAAGAGGCGCTTGGGATGTTCAAGGAGAA
GGTGGCCTCGAGAAAAAGTCAAGAAAAGATTTCAGTAGACATGGGAGGAG
GAGACTGATTTAAAAATATATATATTTTCATAACATTTTTTGTTGGATTT
TGTCCTCCCAACCTGTACACACAACACTTATGACAGATTGGGCGTGATTG
TTTCGTAGGGTGGTGCCCATGCATGTGTTGACGCTACATGTGCGGCGGGT
CGCGACGTGGAAGAAGGAAGGCTCGGTTGTGTGACGTGGATGTGTAATGC
ACAAGGGGGCTGACACCGATCTGAAATTGTGGCCACTTCGAAATATTCTG
AATTGTAGTCGTTTCGTCTTCGACACGCTTCCGCTTGTAAGCCGTGTGCT
GTCGAAAGTTGTTGGTGGTTTCCGTCGATTGAGATGAGAGGGGGGCGGGA
CTCCGGCTGGTGTTGATCGCCCTCTACGTTGCTTCGACACCACTGCCACC
ACCGCCCTGTACTCAGACCGGAACGGTGCGGTTTTCGGCTTAACATGTAC
GCCGTGGGGTCCAACGCTTACAGCCCTTAATGACGTTTGAACCAAGGGGT
TGCCGGGATCAAAGTTTTGGACAGGTATGCATACGCCTCTACCCCCACTC
ATCCCCACCCGGGGCGGAAAATTTCGGCATGTGACCATGAAACACAGGCA
ATACTTACAGAAATTTGGCGGGCCTTCGAGACTTTCTTACCTTCGCTTTC
GCGGCAACACGAGAGGCGCATGTTGCTCCTAGAGAGTGGCACATTTTATC
TAGAATGGGGCATTCGTCTGGGCACATATAGGCACGATACATTTTTCCTG
CTCCCAGAAACCCTCGCGAATGCTGCAATTGTGTTGTTGCCCTTGCCGTT
GACTGCTTTTATTGATACGCAAAATACATCCAGGTTGCCTGGTCCCGTCC
CGAAGTATGAGCGTTTGTCTTTGCCTCCGAGCAGAAACAAACTGTTTTCA
GGTTGGATTGATTATCGACCGATGTCTCGCTAAGTTTCTCTCTGGTGTTG
GAGACCCCGGGGATTGCAGCTATATGCCCCCTCCCCGCGATCTCAGATAT
CCGATATTGCGGCATATGTGCCCTGATTCTTGGCAAGCCCCTGTTTGAAC
AGGCAGAGGAATGGGACCCGTGATTGACGGTGGCATACCGTACAGCACTA
CATGACACCAGGGCACATGGGATTACGTGCAAGTTCGCTGG
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Coding sequence (CDS) from alignment at P-lacustris_contig981:36568..38758+

>mRNA_P-lacustris_contig981.16132.1 ID=mRNA_P-lacustris_contig981.16132.1|Name=mRNA_P-lacustris_contig981.16132.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2076bp|location=Sequence derived from alignment at P-lacustris_contig981:36568..38758+ (Pleurocladia lacustris SAG_25_93)
ATGAGTGCTGTGGACTACTCTAAGTGGGACAAGATGGCGAATGAGATGAG
CGACAGCGATGATGACCACGGCAACAATCCGGAGGTGACCACTTTCGATG
AGCCTCAGTCAGTAACCTTCGGCGGTACACCAGCGTCTGCCGAAGTTTGG
ACTGATACCAGCGATACCGGTCACCACCCCACCCCAAGCTCTCCTCATGT
TGAAGCTCCAATAGATGGATTCGCTGGAGCGGCGGCGGAGGCAGGGGGTA
CCGCGAGCGCCGCCTCGCCTCGGCCTAAGATCCACGAGCCTGTCAGCAAC
GAGCAGCTCGCAGAGAACGGCGCGGCTGTGCATCGCGACGACAACGACGG
TCGACAGGTCCTGCATTACGTATGGCGGCAAGCGAGAGAAGAGGTCGCGG
TTGTAGTCCCGGTACCGTCGGGGACTCGTGCGGCAGATGTGGAGGTTTCA
CTGACGGCAAAACCGGAGACAGTCACAGAGGGAGTTGCTGACCTCCTTAG
AGTGTCTGTCAAGGCAAGCAGCGGGGTTGGTATTGCTAGCGGGGCGGCCG
GGGATGATGTTGCGGCGCCGGGGGTGGGGGCGGGCATGCTGCATGTGCTC
GAAGGGGAGCTCGCGTTCCAGGTGAAACTGGGAGAGGAAGGCGAAGGCGA
GGTGGATTGGGAGCTCAAAGACTACCCGGGAACGGTGGTAACCAGAGATT
GCCCGGTTGACGGTGAGGATGCTGGTGGTACGCCAGCAGCAGCAACAGCA
GCAGCAGCAGGGAGCGGAGAAGGATTCATCGCGAGAAGAAGCGGcaGCAA
TGGCGATCGGCGAgGGGTTGAAGTAGTCCTGAGGAAACACTGTCCCGTTT
CTAACGCAGCGGTGTGGTGGAAATCTTTGCTGAAGGGAGGGCCGGAGATC
GACGTCTCCGCGATCAAGGGGAGGGCGACCAACGAACACCAGTCGGTTTG
GGAAGAGGCGCTTGGGATGTTCAAGGAGAAGGTGGCCTCGAGAAAAAGTC
AAGAAAAGATTTCAGTAGACATGGGAGGAGGAGACTGAATGAGTGCTGTG
GACTACTCTAAGTGGGACAAGATGGCGAATGAGATGAGCGACAGCGATGA
TGACCACGGCAACAATCCGGAGGTGACCACTTTCGATGAGCCTCAGTCAG
TAACCTTCGGCGGTACACCAGCGTCTGCCGAAGTTTGGACTGATACCAGC
GATACCGGTCACCACCCCACCCCAAGCTCTCCTCATGTTGAAGCTCCAAT
AGATGGATTCGCTGGAGCGGCGGCGGAGGCAGGGGGTACCGCGAGCGCCG
CCTCGCCTCGGCCTAAGATCCACGAGCCTGTCAGCAACGAGCAGCTCGCA
GAGAACGGCGCGGCTGTGCATCGCGACGACAACGACGGTCGACAGGTCCT
GCATTACGTATGGCGGCAAGCGAGAGAAGAGGTCGCGGTTGTAGTCCCGG
TACCGTCGGGGACTCGTGCGGCAGATGTGGAGGTTTCACTGACGGCAAAA
CCGGAGACAGTCACAGAGGGAGTTGCTGACCTCCTTAGAGTGTCTGTCAA
GGCAAGCAGCGGGGTTGGTATTGCTAGCGGGGCGGCCGGGGATGATGTTG
CGGCGCCGGGGGTGGGGGCGGGCATGCTGCATGTGCTCGAAGGGGAGCTC
GCGTTCCAGGTGAAACTGGGAGAGGAAGGCGAAGGCGAGGTGGATTGGGA
GCTCAAAGACTACCCGGGAACGGTGGTAACCAGAGATTGCCCGGTTGACG
GTGAGGATGCTGGTGGTACGCCAGCAGCAGCAACAGCAGCAGCAGCAGGG
AGCGGAGAAGGATTCATCGCGAGAAGAAGCGGcaGCAATGGCGATCGGCG
AgGGGTTGAAGTAGTCCTGAGGAAACACTGTCCCGTTTCTAACGCAGCGG
TGTGGTGGAAATCTTTGCTGAAGGGAGGGCCGGAGATCGACGTCTCCGCG
ATCAAGGGGAGGGCGACCAACGAACACCAGTCGGTTTGGGAAGAGGCGCT
TGGGATGTTCAAGGAGAAGGTGGCCTCGAGAAAAAGTCAAGAAAAGATTT
CAGTAGACATGGGAGGAGGAGACTGA
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