mRNA_P-lacustris_contig98.16106.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig98.16106.1
Unique NamemRNA_P-lacustris_contig98.16106.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: A0A6H5J7B7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7B7_9PHAE)

HSP 1 Score: 432 bits (1110), Expect = 1.920e-146
Identity = 207/269 (76.95%), Postives = 237/269 (88.10%), Query Frame = 1 
Query:    1 MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYELRASKRRVDMIHRWEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKPMLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDKDGNTCPFPSQASRVGPWRSPENIAGEVINEKVDIYSLGMVFYSMLALHPPYTNVPDASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARPSAKRVVERLEILQRQLAMQ 807
            MM+G+K LIGNGNIRDVYLVE  GR LVVK+ RED+E RA++ RV+ IHRWEAAA+DAVRGHPNVVD++G+CG +SVSEYF VRLDDLVLK  A+P+ I TVVSMALDAARGLQALHEAPGG IIHFD+KPQQLMVD +GR+K+NDLNMC F  +D DGNTCP+ S ASRVGPWRSPENIAGE +NEK+DIYSL MVFYSMLALHPPY NVP+A+GNI  GIPPPTDPSWHPGFL+I+RDMWQR+PNARPSA+RVV+RLE L+  L  Q
Sbjct:  246 MMEGKKTLIGNGNIRDVYLVERGGRNLVVKYLREDFEQRATRTRVERIHRWEAAAIDAVRGHPNVVDMLGICGPSSVSEYFPVRLDDLVLKAGAQPIPILTVVSMALDAARGLQALHEAPGGTIIHFDMKPQQLMVDDQGRLKINDLNMCSFPDTDADGNTCPYESSASRVGPWRSPENIAGEKLNEKLDIYSLAMVFYSMLALHPPYLNVPNATGNIMEGIPPPTDPSWHPGFLDIVRDMWQRDPNARPSARRVVQRLEFLRDHLVTQ 514
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: D8LI06_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI06_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.760e-122
Identity = 180/263 (68.44%), Postives = 215/263 (81.75%), Query Frame = 1 
Query:    1 MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYELRASKRRVDMIHRWEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKPMLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDKDGNTCPFPSQASRVGPWRSPENIAGEVINEKVDIYSLGMVFYSMLALHPPYTNVPDASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARPSAKRVVERLEILQ 789
            M+  EK+LIGN  IRDVYLVEW GRKLVVK  RED+EL+AS+RRVD IHR EAAALD VRGHPN+VD+VGLC S+SVSE+    LDDLVLK  AKP+ I+ VVSMALDAARGLQALHEAPGGAI+H DIKPQQLM+D  GR+K+NDL+MC+F  +D +GNTCP+P++A + GP+RSPENIAGE ++EK+D+YSL M FY+MLAL PPY   P A   I  GIPP  + SW   F+EI+ DMWQR+P ARPSA+RVVERLE+LQ
Sbjct:    1 MLADEKKLIGNRKIRDVYLVEWGGRKLVVKALREDFELKASRRRVDKIHRREAAALDEVRGHPNIVDMVGLCESSSVSEFVPGSLDDLVLKDGAKPLPIALVVSMALDAARGLQALHEAPGGAIVHSDIKPQQLMLDEYGRVKINDLSMCRFPPADVEGNTCPYPARACKSGPFRSPENIAGEPLSEKIDVYSLAMTFYTMLALKPPYKGEPGARARILAGIPPSVNLSWDRDFVEILGDMWQRDPKARPSARRVVERLELLQ 263
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: D8LHZ9_ECTSI (Serine/threonine-protein kinase pkn5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ9_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 1.310e-119
Identity = 167/211 (79.15%), Postives = 189/211 (89.57%), Query Frame = 1 
Query:  175 VRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKPMLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDKDGNTCPFPSQASRVGPWRSPENIAGEVINEKVDIYSLGMVFYSMLALHPPYTNVPDASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARPSAKRVVERLEILQRQLAMQ 807
            VRGHPNVVDLVG+CG +SVSEYFAVRLDDLVLK  A+P+ I TVVSMALDAARGLQALHEAPGGAI+HFD+KPQQLMVD +GR+K+NDLNMC F  +D DGNTCP+ S ASRVGPWRSPENIAGE +NEK+DIYSL MVFYSMLALHPPY  V +ASGNI++GIPPPTDPSWHPGFL+I+RDMWQR+PNARPSA+RVV+RLE L+  L  Q
Sbjct:    5 VRGHPNVVDLVGICGPSSVSEYFAVRLDDLVLKAGAQPLPILTVVSMALDAARGLQALHEAPGGAIVHFDMKPQQLMVDDQGRLKINDLNMCSFTDADADGNTCPYESTASRVGPWRSPENIAGENLNEKLDIYSLAMVFYSMLALHPPYQGVRNASGNIKDGIPPPTDPSWHPGFLDIVRDMWQRDPNARPSARRVVQRLEFLRDHLVTQ 215
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: A0A6H5L434_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L434_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 5.180e-79
Identity = 124/172 (72.09%), Postives = 147/172 (85.47%), Query Frame = 1 
Query:    1 MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYELRASKRRVDMIHRWEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKPMLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDKDGNTCPFPSQASRVG 516
            M+  EK+LIG+GNIRDVYLVEW GRKLVVK  RED+ELRAS+RR D IHRWEA ALD VRGHPN+VD++GLC S+SVSE+F  RLDDLVLK  AKP+ I+ VVSMALDAARGLQALHEAPGGAI+H DI PQQLM+D  GRIK+NDL+MC+F  +D +GNTCP+P++A + G
Sbjct:  221 MLADEKKLIGHGNIRDVYLVEWGGRKLVVKALREDFELRASRRRADKIHRWEATALDEVRGHPNIVDMLGLCESSSVSEFFPSRLDDLVLKDGAKPLPIALVVSMALDAARGLQALHEAPGGAIVHSDINPQQLMLDEYGRIKINDLSMCRFPPADAEGNTCPYPARARKSG 392
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: D7G774_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G774_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 8.380e-74
Identity = 120/272 (44.12%), Postives = 170/272 (62.50%), Query Frame = 1 
Query:    1 MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYE-LRASKRRVDMIHRWEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKP-----MLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDKDGNTCPFPSQASRVGPWRSPENIAGEVINEKVDIYSLGMVFYSMLALHPPYTNVPDASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARPSAKRVVERLEILQRQL 798
            M++G+ E +G G  R+V L  ++G+ + +K  R+D E    +K R    HRWEA ALD V  HPN+V L+GLC    ++EYF   +D L++  D+       + I  ++ MAL AARG+QALHE PGG ++H D++P+QL++D  G +KVNDLN C+F+  D  G  CPF       G WRSPE  AGE + EK+DIYSLG +F++ML   PP+         +  G  P  DPSWHP F+++  DMW+R+P  RP+A+ VV RLE++  QL
Sbjct:    1 MLEGKTEFLGKGYWREVRLATYQGQDVAIKTLRDDQEETDRNKER----HRWEAVALDLVSDHPNIVHLLGLCECDMITEYFPYYMDVLLMGDDSSSEELVELSIGEIIRMALQAARGIQALHEMPGGPVVHADLQPRQLLLDENGVVKVNDLNRCRFMARDSSGEPCPFYISKGN-GVWRSPEEYAGEGLTEKLDIYSLGNIFWAMLGRKPPFKRDDKYKARVLRGERPKVDPSWHPEFVQLFTDMWKRDPRERPNAREVVLRLEMMYAQL 267
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: A0A6H5JFK2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK2_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 9.100e-73
Identity = 119/271 (43.91%), Postives = 168/271 (61.99%), Query Frame = 1 
Query:    1 MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYELRASKRRVDMIHRWEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKP-----MLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDKDGNTCPFPSQASRVGPWRSPENIAGEVINEKVDIYSLGMVFYSMLALHPPYTNVPDASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARPSAKRVVERLEILQRQL 798
            M++G+   +G G  R+V L  ++G+ + +K  RED E     R     HRWEA ALD V  HPN+V L+GLC    ++EYF   +D L++  D+       + I  ++ MAL AARG+QALHE PGG ++H D++P+QL++D  G +KVNDLN C+F+  D  G  CPF       G WRSPE  AGE + EK+DIYSLG +F++ML   PP+    D  G +  G  P  +PSWHP F+++  DMW+R+P  RP+A+ VV RLE +  +L
Sbjct:  127 MLEGKTAFLGKGYWREVRLATYQGQDVAIKMLREDQEETDRNRER---HRWEAVALDMVSDHPNIVHLLGLCDCDMITEYFPYYMDVLLMGDDSSSEELVELSIGEIIRMALQAARGIQALHEMPGGPVVHADLQPRQLLLDDNGVVKVNDLNRCRFMARDSSGEPCPFYISKGN-GVWRSPEEYAGEGLTEKLDIYSLGNIFWAMLGRKPPFVRDDDYKGKVLRGERPKVNPSWHPEFVQLFTDMWKRDPRERPTAREVVLRLEAMYAEL 393
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: D7FNX1_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX1_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 9.490e-67
Identity = 121/269 (44.98%), Postives = 173/269 (64.31%), Query Frame = 1 
Query:    1 MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYELRASKRRVDMIHRWEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKPMLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDK--DGNTCPF-PSQASRVGPWRSPENIAGEVINEKVDIYSLGMVFYSMLALHPPYTNVPDASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARPSAKRVVERLEILQRQL 798
            M+ GE  LIG G +R V++VE+EG  +VVK  +   ELR  K  ++M HR E+  L+A+RGHPNVV ++G C +  V+EY        + +   K + +  VVS+ALD A+G+QALHE  G   IH D+KPQQL++D  GR KVND N    + +D   DG  CP    + +R+ PWR+PENIAG+ + EKVDIY++GM++YS+++   P+ +V            P  DPSWH GF+EII+DMW  +P+ RP A++VV+RL+ LQ +L
Sbjct:  100 MLSGEMTLIGTGRVRTVHMVEYEGEAVVVKTLQHVEELRRLKAHLEM-HRVESLTLEALRGHPNVVGMLGFCNTTVVTEYHPDNFLHTIFRKKEK-LSLRRVVSLALDVAQGMQALHEIAGA--IHLDMKPQQLLIDDAGRGKVNDFNSVHLMSADASADGKHCPILTGRPARLVPWRAPENIAGKPVTEKVDIYAMGMIYYSLVSGGLPFPDVETFDEARAAHERPEIDPSWHKGFVEIIQDMWHEDPDERPFARQVVQRLQALQDEL 364
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: D7G7W7_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W7_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 3.180e-65
Identity = 122/272 (44.85%), Postives = 170/272 (62.50%), Query Frame = 1 
Query:    1 MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYELRASKRRVDMIHRWEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAK-PMLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDK--DGNTCPFPSQASRVG-PWRSPENIAGEVINEKVDIYSLGMVFYSMLALHPPYTNVPD--ASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARPSAKRVVERLEILQRQL 798
            M+ G   L+GNG +RDVYLVE+EGRK+ +K  R   + R+ +  ++  H+ E   LDA+RGH N+V ++GLC +  V+EY+       + +   + P L   VVSMALDAARGLQALHE  G   IH D+KPQQL++D +GR+ +ND N    +   +  DG  CP  S    +  PW SPEN AGE +    DIYSL M+F+S++A   PY   P+  A    + G P   DPSWH GF+++++DMW + P  RPSAKRVV RL++LQ ++
Sbjct:   23 MLAGNTTLVGNGRVRDVYLVEYEGRKVALKTLRNMDDSRSQRVHLEK-HKREILTLDAMRGHRNIVGMLGLCDTMVVTEYYTTSFLRAIFRGRMELPDL--AVVSMALDAARGLQALHETAGS--IHVDLKPQQLLIDDDGRVMLNDFNSAHIMSISQAGDGTACPAQSTKRNLPTPWPSPENYAGEPLTPASDIYSLAMIFFSLMAASLPYEGNPELLARAMSRQGRPE-IDPSWHKGFMKVVQDMWHQTPQKRPSAKRVVVRLQLLQAEI 288
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: D8LN73_ECTSI (Serine/threonine/tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN73_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 4.600e-65
Identity = 118/275 (42.91%), Postives = 170/275 (61.82%), Query Frame = 1 
Query:    1 MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYELRASKRRVDMIHRWEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKPMLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDKDGNTCPFPSQA---------SRVGPWRSPENIAGEVINEKVDIYSLGMVFYSMLALHPPYTNVPDASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARPSAKRVVERLEILQRQL 798
            M+  E+ L+ +G +RDVYLVE+EG+ LVVK  R   ELR  K  + M H+ E   +DA++GHPN+V+++G+CG+  V+++F       + +  A PM I  VVS+AL AA+GLQALHE  GG  IHFD+KPQQL++D +G   +ND N  K +         P P +A         +++  WR PEN AG+ + EK DIYS+GM+FYS++A   PY         + +G  P  DPSWH GF+E++  MW  +P  RPSA++VV RL  +Q ++
Sbjct:    1 MIRREQTLLASGLVRDVYLVEYEGQALVVKTLRNVDELRKQKLYLTM-HKREVLTMDALKGHPNIVEMLGVCGTTVVTKFFKEDFKGSIRRRGA-PMPIRQVVSLALGAAKGLQALHEIVGG--IHFDMKPQQLLIDDDGTAVINDFNALKLM------GRSPGPDEAFCAVHGGTPAQLITWRPPENYAGKPLTEKADIYSMGMIFYSVIAGRNPYDTPEALQTAVSHGSKPEVDPSWHRGFMEVVEQMWLDDPERRPSARQVVTRLTAIQEEV 265
[Close]
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Match: A0A6H5LAH0_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH0_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 4.380e-64
Identity = 119/269 (44.24%), Postives = 168/269 (62.45%), Query Frame = 1 
Query:    1 MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYELRASKRRVDMIHRWEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKPMLISTVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMCKFIYSDK--DGNTCPFPSQA-SRVGPWRSPENIAGEVINEKVDIYSLGMVFYSMLALHPPYTNVPDASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARPSAKRVVERLEILQRQL 798
            M+  E  L+ +G +RDVYLVE+EG+ LVVK  R   ELR  K  + M H+ E   +DA++GHPN+VD++G+CG+  V+++F       + +  A PM I  VVS+AL AA+GLQALHE  GG  IHFD+KPQQL++D +G   VND N  K +      D   C       +++ PWR PEN AG+ + EK DIYS+GM+FYS++A   PY         + +G  P  DPSWH G++E++  MW  +P  RPSA++VV RL  +Q ++
Sbjct:  115 MIRREHALLASGLVRDVYLVEYEGQALVVKTLRNVDELRKQKLYLTM-HKREVLTMDALKGHPNIVDMLGVCGTTVVTKFFKEDFKGSIRRRGA-PMPIRQVVSLALGAAKGLQALHEIVGG--IHFDMKPQQLLIDDDGTAVVNDFNALKLMGRSPGPDEEFCAVHGGTPAQLIPWRPPENYAGKPLTEKADIYSMGMIFYSLIAGRNPYDTPEALKTAVSHGSKPEVDPSWHRGYMEVVERMWLDDPERRPSARQVVVRLTAIQEEV 379
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig98.16106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7B7_9PHAE1.920e-14676.95Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LI06_ECTSI1.760e-12268.44Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
D8LHZ9_ECTSI1.310e-11979.15Serine/threonine-protein kinase pkn5 n=1 Tax=Ectoc... [more]
A0A6H5L434_9PHAE5.180e-7972.09Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G774_ECTSI8.380e-7444.12Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
A0A6H5JFK2_9PHAE9.100e-7343.91Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FNX1_ECTSI9.490e-6744.98Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
D7G7W7_ECTSI3.180e-6544.85Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
D8LN73_ECTSI4.600e-6542.91Serine/threonine/tyrosine kinase n=1 Tax=Ectocarpu... [more]
A0A6H5LAH0_9PHAE4.380e-6444.24Protein kinase domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig98contigP-lacustris_contig98:17459..23311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue9.8e-56
Seed eggNOG ortholog2880.D7FNX1
KEGG koko:K04427
KEGG Pathwayko04010,ko04013,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.25
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Exons6
Model size1016
Cds size810
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817410.2116158-CDS-P-lacustris_contig98:17458..176321622817410.2116158-CDS-P-lacustris_contig98:17458..17632Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 17459..17632 +
1693495046.4657674-CDS-P-lacustris_contig98:17458..176321693495046.4657674-CDS-P-lacustris_contig98:17458..17632Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 17459..17632 +
1622817410.2222404-CDS-P-lacustris_contig98:18489..186211622817410.2222404-CDS-P-lacustris_contig98:18489..18621Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 18490..18621 +
1693495046.486037-CDS-P-lacustris_contig98:18489..186211693495046.486037-CDS-P-lacustris_contig98:18489..18621Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 18490..18621 +
1622817410.2327552-CDS-P-lacustris_contig98:20511..207191622817410.2327552-CDS-P-lacustris_contig98:20511..20719Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 20512..20719 +
1693495046.5002623-CDS-P-lacustris_contig98:20511..207191693495046.5002623-CDS-P-lacustris_contig98:20511..20719Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 20512..20719 +
1622817410.2468522-CDS-P-lacustris_contig98:21140..211751622817410.2468522-CDS-P-lacustris_contig98:21140..21175Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 21141..21175 +
1693495046.5106678-CDS-P-lacustris_contig98:21140..211751693495046.5106678-CDS-P-lacustris_contig98:21140..21175Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 21141..21175 +
1622817410.2608495-CDS-P-lacustris_contig98:21481..216401622817410.2608495-CDS-P-lacustris_contig98:21481..21640Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 21482..21640 +
1693495046.520344-CDS-P-lacustris_contig98:21481..216401693495046.520344-CDS-P-lacustris_contig98:21481..21640Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 21482..21640 +
1622817410.2728758-CDS-P-lacustris_contig98:23003..231051622817410.2728758-CDS-P-lacustris_contig98:23003..23105Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 23004..23105 +
1693495046.5298753-CDS-P-lacustris_contig98:23003..231051693495046.5298753-CDS-P-lacustris_contig98:23003..23105Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 23004..23105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817410.2849672-UTR-P-lacustris_contig98:23105..233111622817410.2849672-UTR-P-lacustris_contig98:23105..23311Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 23106..23311 +
1693495046.540367-UTR-P-lacustris_contig98:23105..233111693495046.540367-UTR-P-lacustris_contig98:23105..23311Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 23106..23311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig98.16106.1prot_P-lacustris_contig98.16106.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig98 17459..23105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig98.16106.1

>prot_P-lacustris_contig98.16106.1 ID=prot_P-lacustris_contig98.16106.1|Name=mRNA_P-lacustris_contig98.16106.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=270bp
MMDGEKELIGNGNIRDVYLVEWEGRKLVVKWSREDYELRASKRRVDMIHR
WEAAALDAVRGHPNVVDLVGLCGSASVSEYFAVRLDDLVLKPDAKPMLIS
TVVSMALDAARGLQALHEAPGGAIIHFDIKPQQLMVDSEGRIKVNDLNMC
KFIYSDKDGNTCPFPSQASRVGPWRSPENIAGEVINEKVDIYSLGMVFYS
MLALHPPYTNVPDASGNIQNGIPPPTDPSWHPGFLEIIRDMWQREPNARP
SAKRVVERLEILQRQLAMQ*
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mRNA from alignment at P-lacustris_contig98:17459..23311+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig98.16106.1 ID=mRNA_P-lacustris_contig98.16106.1|Name=mRNA_P-lacustris_contig98.16106.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5853bp|location=Sequence derived from alignment at P-lacustris_contig98:17459..23311+ (Pleurocladia lacustris SAG_25_93)
ATGATGGACGGGGAGAAGGAGCTGATTGGCAACGGCAACATCAGGGACGT
CTACCTCGTGGAATGGGAGGGTCGTAAGCTCGTAGTCAAGTGGTCGCGAG
AGGACTATGAGTTGAGGGCGAGCAAGAGAAGAGTCGACATGATTCACCGC
TGGGAGGCGGCAGCGTTGGATGCGGTAAGGGAATAATACAGCAATATTGT
GGCAACCGTGCGAAGCCTTTTTCCCTTCTGGATGTGAATGAGTTCTTCGG
GCGATTTTGGCGATTTGTTGTGGGCCTTGTCTGACAGGCGGCAGGCGTGC
GGGATGGTGTCGTTGAACCGTGTAGAAGCTCCACATAAGCGAATGTAGTA
ACCCCCTCCCCCAACCACCACAGTGGTTATCCATTGTGCGATAGGTACAT
AAACAAACATGGCATCCCAACAGCATCATGAAGGCGGGTTTTCCACACCA
ACTCTGCTTGAGTTCCCATTTTGGTCTCCGCCAGGCGTGGGTGCGACCTT
CCTTGGATTAAAACGGAGAAGGAGGTGCTGGACATCGAAGTTAGATCGGT
TCGAAAACGGAACGAAAATCTAAAGTCTCGACACACGCTCTGGAGGCACA
AAATTCAAACTTTCACCTGACGCGGTTGAACACAGTCCGCCGCCCAAATT
TCCAAGATAGGTGTCTCCACTTCTGAGACGGCGCTTGCATGGTTCTCAAG
GATGGCCAGATCTTGTGAAATGCTGTCAGCGACAGAAAGCATTCCGTCAG
CGGAGGTATCATCGGGTTGTGGTAAATGTGCTTGGAGCCCAATAGCCGGA
GCCCGCCTTTGCATCTGGTGTGCCTTGAAACAGCGTCTCGGTGAATTAAC
TTTTGCTCGCACACACGGGTAGTTTGGCTGGGTTGCCCCATGAATAACCG
GATTACCTTCATCGTTTAATGTTTGGCCAGTGAGGAACACGGGAGGGGTG
CTAGAGAGAGAGCGACGTGAGCAGGGTTTCAAACACAGCAACCACGGTGA
ACACAACAACACAACTTGTTGCTATCTCCAGGTCAGAGGACACCCAAACG
TTGTCGACCTGGTGGGGCTTTGTGGCTCCGCATCGGTGTCCGAGTACTTC
GCTGTACGTCTCGATGATCTCGTTTTGAAGCCGGACGCGAAACCGATGCT
CATCTCCACCGTGGTAAGTAATTCAACGCTTTTACGCAGCGAGGTGGTAA
GTGTAGCTCGTACTCATGGTCCCATCTCCCGACGTTCACCGAGTACTCCT
TCCGTTGCACCTTTGGTCAGTCTGATGTGAAACGGAAGCTCCAGTTTTGA
CTTACCGTACCACGTGGACTAGAACGGAAGAGGAGGCACAGAAAGATGAT
CAAAACAGTGCCTCAAAGTGAAGACAACAGCAGCAGCAGATGTGCTGCCG
CACTCGTCGAAGCATATTTTCACCCCGAAACCACGAAACCACGCTGCAGT
AGTCGTAGATTCGTGCTTGCCCAGTTTCACGTTCTCTACCAGCCTCTGTG
TGCCGTCCAATGCCGTATGCTTGAGCCATTGACATCTCGAGGTTTCGGGG
CTTCTTCCTCATCGCACGCTGTCCAGCCCATAGAAATGGCAATGGTGGCA
AGAGTGGCAGTGAATTTACCACCTCCGCGACAATTTGCGTTCCTCCGATA
TTCCACACCACAAATAGCGCCCATCATGGCGGAATACACTTCCATTGCCA
TGTGCACAGTGCGTGTACGATATCACCACCGTCATGCTCGCTCAAGGCGT
CGGGCGATGAAGTCGGGCGTCAAGGGAGTGGGGCAATGCTAACGTTTTCT
CTTCACGACTTTTCTTCCACAGTGCTTGAGGGAAACGCGAGCCAAAGCTG
GTGTCTCGCGTAGCGTATTCCCCGCATCCGTGCTTCGGATCAGGTTCCCA
TCGATTTCCTTTCATTGGAGTAAGCGCCCTCCACCGTTAGTTATTCGCCC
GAGGGTCGATCCCATTTCACCGGCCTCATGGCCAATTTCCCACCACGTAC
GCTCCATCATCCGAAGACGCGTGCCCTGCACTTGGGATTCACTCAACAGA
ATTGATGACGCCACCCCGTACCCTTGGTAGTGTAGTAGAAGAGCTCCAAG
TCCGCTCGCTCTCCCTCCATTCATCGTGAACTCCACTGACAGCAGTTCCC
TATCTCCCCGCTTTTTTAGCAGGTATCGGCTCCGGCAGTAGGTCGCTCGG
GAGAACGCGCTTTTTCCGAGCATGGCCCTTATAGAAGCCGAAACTTGATC
ATTAGACTAGTCAGCGCTGACAAGTCTAATGGTTAAGTTTCGGCTTCTAT
TAAAGTTAGTCGTGGGGCCAAACACGGCACTTTCGCTTCCGGGGAGGGTA
CCGCTCCCTCGCCAGCGCGTATCTAAGGTTCCTGTTTCGCTTCACTGGTT
GCGTCCGTCACACACACTCTATCGTAGAGTTCATGGGTCCCTAGGACTCT
CCGTCACCTCCACTCCACACAGGAGTATCCGCAGTATCGGGAGAAAACGC
TTTTTTTCCTCGGATTCCCTTTTTCAGTCATGCCGGGATTCGAACCCGCG
ACTTGACTTTTATAGAAGCCGAAGCTGAACCACTAGACTAGTCAGCGCTG
ACTAGTCTAATGGTTAAGTTCCGAAAAAAGCGTTTCTCCCGAGACTGCGG
ATAATCCTGCGTGGAGTGGAGGTGACGGAGAGTCCTGGGGACCCATGAAC
TCTACGATAGTGTATGGGTGACGGACGCAACCAGTGAAGCGGAACAGGAA
CCTTAGATACGCGCTGGCGAGGGAGCGGTACCCTCCCCGGAAGCGCAAGT
GCCGGGTTTGGCCCCACGACTAACTTTATAGAAGCCGAAACTTAACCATT
AGACTTGTCAGCGCTGGCTAGTCTAATGGTTAAGTTTCGGCTTCTATACC
CTCTGCTGTTGCCTACCGTCCCCCTCCTTGATGAAACTCAACGTTGTACC
CGCGTGTATAGCAGGAGATCACAACGAACGCACTTTCTAACCCCACCTCC
TTCGTTGATAAAACGAATACTGCGCGCGTATCTCGTCCTGCGCGCTTGAA
CAGGTGTCGATGGCGCTGGATGCCGCCCGAGGGCTACAGGCCCTGCACGA
GGcCCCGGGGGGAGCCATAATCCACTTCGATATCAAACCACAGCAGCTCA
TGGTGGACAGCGAAGGGCGGATCAAGGTCAACGACCTCAACATGTGCAAG
TTTATCTACAGTGATAAGGACGGAAATACTTGCCCCTTCCCGAGCCAAGC
GTCGAGAGTAGGTGCGTACTGCGCGTCTGCACTTTTCTCTGTGCTGGCAT
GGCCGTGTGCGCTCCCAATCAGGACCAATCAGGACCAGAGTGTCATGTTG
TAGACATAACTGCGATAACAACAACACCTCGGGGGAGACCATCCTGGACA
GCTTTGATCGTAGAACCCAGCAATAATACATGCTTTCCAAGAATGGCATG
AATATCCTGGGTCAACTGCTCTCATATGTACTGAGTGCACTGTTTGTGAC
TAGCCAACATGTATCCATCAAGAACAATGGTTCACTACTCAGGCCCATTG
CTCAGGCTCGACCTTGTTCCCCGCAACTGAACCGAAACGCGTGGACGTCA
CTTACTCTACACTTGATGATCGTGCTGCGATAAACCCTTGGGCAAATACA
CAATGCTCTGGACTACCCTACCTTTGCCCAAGGCCCTTGGCGATCCCCGG
AAAATATTGCTGGAGAGGTGAGAGTGGCAGCATGTGCTTCTGCCCACAAG
GGGTTGGTGTTGTTGCTGTTGTGTTGCTGGTGCTGTGTTCCCTATCAATC
GTTTCGTAGGAGCCTTCCCATGAATCCACGGTGCCCCCTTCAGGTCGTGC
GAAGGAGGGCACGCTGTCAATACAAGCTTTGTCGAGGAACCTGGGACAAG
CAGCGGCTGTGTTTCAAACCCGCGGACCCCCATTTCCTCAACCCCGGCCC
CAACACTTTTTTCTTCGAAATCCCAACATCAGGGCTTTAACCAAACGTCT
GTTTGGTTGCATTGAAACACCAGGTCATAAACGAAAAGGTAGACATTTAC
AGCTTGGGCATGGTGTTCTACTCCATGCTGGCGCTCCATCCTCCGTACAC
GAACGTGCCGGATGCGAGCGGGAACATCCAAAATGGAATACCTCCGCCGA
CGGACCCCTCTTGGCACCCGGGTTTCCTTGAGGTAAGGCTGCTCCCCTTT
CCTAGCGTGTACGCTGTACGTATTTGGCGGTTTCTGAACGACAGACGAAG
CGCTGATCATAAGGTTCACTAGCCAGCGCAACATTTTCAGGATGACGAAC
AACGAACCCGGGTTAGGCCAGTCAGTGCTAGGTTTTTCTTGCTATGTGTC
TATCTTCTCTTACTGCTGCGTCGATCGCAGAGGGTTTGGGTCAGTTACAT
GTTCGAGCTACTGCAATGTGCCCTACGTTGGCTGGGGGGAGGGGCGGGGT
ACGCCAAACAACGTGAAGCTCGCGTTTACCCCACCGGCAGAAAAGGGGGA
TTGTTGAACAAAGAAATACCGATTATCCCGCTAGTAAGCCCCCGGTGGGA
GGTTAAATAAAAGGCCGATGCGCGTACACGCATACGCTTTCCGCGGACCT
TTAGTTCGCGATGCCGGGGCTTTTGGGTGGTGTCTCAAGGTAGGGGTTGG
TTGGGAGCACTGCCTCACAAACCTCGTCGTTTTCCATTGTCCATGCCTTG
CCTTGGTGGTTTGTTTGATTTGGTTTTGTTTAAGCTTGGCTTGGTTGTAC
GCATCCATTTCGTTGGTTTAATTGTGTGCATTCTTCGTCTGTTTCCGGAA
TTCGCGCATTCGCCACTCTTAATTGCCATTGCGTTGTTGATAAACTATAA
TAGTCGGTACGAGTATGGAGGTCGTGCATCGAGTTCTCATGCAGCATGTT
CCGGGGTTCGTGATGCCTGGTTTGGCTCGACGGGACGAATACAGGGACAA
GGAACTACACATGAAAGCACGAACAAAAGCAGAAATGGGTTGGCCAGTTA
GTCCCTGGCAGCTGTTTGTGTTGTTGCATTGGATTGGTTTTCGCAGGCGC
ATGGAGCTCACGGTCCCGATAAGGCTCGGCCTGCACGCTTCAAACTCGAC
GGGCTATTATGTTTGGAGACGAGGAAACACCCCCTCCGAGCCAACTCAAC
GATGCTGGGTTCCCCCGGCCGAAATTTGTTTTGGGCACGAAAGCTCCTAT
TTGCGATGAAGACAAACGTTGCCGAACGTAACGTTGTCTCGGGCTTGAAC
ATCATTAGGCTTGTCCCCTGGAGATGCGGCTCAACTAAGTGTATATCGAT
ACACGGTTGGTATTTGAAATGCAACAGGTTGCGAACGCCTCTAAATGGGC
AATTGTCCAAGAAGCTTTAGCTTTTGCCCCCATCGTTTTTCTCGCTTATT
CTGCTTGAGTTCCTTTATCTCTCTCTTTCTCTCTCCCCATGTCTCTCTCT
TTCCCTTCGTGTACCTCCCTTTCCCTCCCTCCCCCCACCACCCCGTGTTC
CATTTCTCGCCTACATTTTTCCCCCGCGCTTGCACGGCTCTACAGATTAT
CCGGGATATGTGGCAGCGAGAACCAAACGCGCGTCCGTCCGCCAAAAGAG
TCGTTGAACGCTTGGAGATTTTACAAAGGCAACTCGCGATGCAATAAATG
TGCTGGACCGGTCTATAAAGACACCAGGCGGGACAGGCGAGCTGGTTTGA
GATGTGTTTCAGCTACTGCAGCGTACGCCTCCAGGGAAAGCTTTGCATGC
GCTTGTCGTTCTGGACAGCAATCCGTGTCGGGCTGGGCGGTCGTCACATA
CCAGATAGCACAGGGCACTATCTTTGCGCTAGTCCGGTCAAAGGTAGGGG
TGC
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Coding sequence (CDS) from alignment at P-lacustris_contig98:17459..23311+

>mRNA_P-lacustris_contig98.16106.1 ID=mRNA_P-lacustris_contig98.16106.1|Name=mRNA_P-lacustris_contig98.16106.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1620bp|location=Sequence derived from alignment at P-lacustris_contig98:17459..23311+ (Pleurocladia lacustris SAG_25_93)
ATGATGGACGGGGAGAAGGAGCTGATTGGCAACGGCAACATCAGGGACGT
CTACCTCGTGGAATGGGAGGGTCGTAAGCTCGTAGTCAAGTGGTCGCGAG
AGGACTATGAGTTGAGGGCGAGCAAGAGAAGAGTCGACATGATTCACCGC
TGGGAGGCGGCAGCGTTGGATGCGATGATGGACGGGGAGAAGGAGCTGAT
TGGCAACGGCAACATCAGGGACGTCTACCTCGTGGAATGGGAGGGTCGTA
AGCTCGTAGTCAAGTGGTCGCGAGAGGACTATGAGTTGAGGGCGAGCAAG
AGAAGAGTCGACATGATTCACCGCTGGGAGGCGGCAGCGTTGGATGCGGT
CAGAGGACACCCAAACGTTGTCGACCTGGTGGGGCTTTGTGGCTCCGCAT
CGGTGTCCGAGTACTTCGCTGTACGTCTCGATGATCTCGTTTTGAAGCCG
GACGCGAAACCGATGCTCATCTCCACCGTGGTCAGAGGACACCCAAACGT
TGTCGACCTGGTGGGGCTTTGTGGCTCCGCATCGGTGTCCGAGTACTTCG
CTGTACGTCTCGATGATCTCGTTTTGAAGCCGGACGCGAAACCGATGCTC
ATCTCCACCGTGGTGTCGATGGCGCTGGATGCCGCCCGAGGGCTACAGGC
CCTGCACGAGGcCCCGGGGGGAGCCATAATCCACTTCGATATCAAACCAC
AGCAGCTCATGGTGGACAGCGAAGGGCGGATCAAGGTCAACGACCTCAAC
ATGTGCAAGTTTATCTACAGTGATAAGGACGGAAATACTTGCCCCTTCCC
GAGCCAAGCGTCGAGAGTAGGTGTCGATGGCGCTGGATGCCGCCCGAGGG
CTACAGGCCCTGCACGAGGcCCCGGGGGGAGCCATAATCCACTTCGATAT
CAAACCACAGCAGCTCATGGTGGACAGCGAAGGGCGGATCAAGGTCAACG
ACCTCAACATGTGCAAGTTTATCTACAGTGATAAGGACGGAAATACTTGC
CCCTTCCCGAGCCAAGCGTCGAGAGTAGGCCCTTGGCGATCCCCGGAAAA
TATTGCTGGAGAGGCCCTTGGCGATCCCCGGAAAATATTGCTGGAGAGGT
CATAAACGAAAAGGTAGACATTTACAGCTTGGGCATGGTGTTCTACTCCA
TGCTGGCGCTCCATCCTCCGTACACGAACGTGCCGGATGCGAGCGGGAAC
ATCCAAAATGGAATACCTCCGCCGACGGACCCCTCTTGGCACCCGGGTTT
CCTTGAGGTCATAAACGAAAAGGTAGACATTTACAGCTTGGGCATGGTGT
TCTACTCCATGCTGGCGCTCCATCCTCCGTACACGAACGTGCCGGATGCG
AGCGGGAACATCCAAAATGGAATACCTCCGCCGACGGACCCCTCTTGGCA
CCCGGGTTTCCTTGAGATTATCCGGGATATGTGGCAGCGAGAACCAAACG
CGCGTCCGTCCGCCAAAAGAGTCGTTGAACGCTTGGAGATTTTACAAAGG
CAACTCGCGATGCAATAAATTATCCGGGATATGTGGCAGCGAGAACCAAA
CGCGCGTCCGTCCGCCAAAAGAGTCGTTGAACGCTTGGAGATTTTACAAA
GGCAACTCGCGATGCAATAA
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