mRNA_P-lacustris_contig979.16104.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig979.16104.1 vs. uniprot
Match: D7G0P3_ECTSI (Imm downregulated 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0P3_ECTSI) HSP 1 Score: 356 bits (914), Expect = 1.280e-103 Identity = 289/683 (42.31%), Postives = 347/683 (50.81%), Query Frame = 2
Query: 314 TVQMMHSQIELLRQTILNLRKTGAQEMGDLRRQIGALEKLDPISAKALFDDIDSTSDAGDQPPAGVTPSQIKRLELLEDAIWGRSAVAGQASHLNIETSAEAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXLVGHPDDGXXXXXXXEDVGDGEGAAARTEPKMRTWARKMMMFGGMAADVGVLQRQIDTFGEREENIETRVAALERQLAADAEAASSDAAEQRLKLLWRLMRQTTILRDKLVADGIAACAEGERGVNGVLIQEEALWAAPQETAXXXXXXXXXXXXXXXXXXXXXXXLILAARARLAWLENHAEETPSLG-TSLAGAVDSSEMVETQGSNQPIARES-DVDGGEAVES-TQANGDIGDVRQR-AKGDLPALAWKAPGEDEGASGAGWAVNLRNISAGG----GTTDVEVDRLWCRMDEIEGRIYRICADRERQRSQAGGP----KLAEVTGADLRHLQESMEQSSLALGLKLQDGLGSLSRRIELLEDNVQMVKARALSSSAPHAIAPPD-------------------------DSRIEQILTKVLGNEIPMVRRGIEGLTERVTSLEEAMAGAKEAGPPGLSAEEAAAXXXXXXXQ-ANEETQARMVAEMSALEERVDRRVREEARRTREDREAAEARGAMRRVSAVVSAYTADLATRLEGLRSEHEQQG 2248
TVQ+MHSQI LLRQT+L+LR+T AQE+GDLRRQI ALE P +AKA FDDIDS A +Q P G GM + T GERE+ IE+RVAALER+L ADAE A + AAE++ +LL RLMRQT +LR+ ++A+G+AA EG QEE WA +E LIL ARARLAWLE+ AE TPS G + +G S + ET+ ++QP ++ D+D E T A+G DV QR A G LPA AW APG DEG G D EV RLW MDEIE RIYR C+DR R S+ G K EVTGADL++LQ+S+E SSLA+G KL++GL +L R+ LLE NV+ VKARALS SA A++ DSRIE+IL VLG+EIP +RR + G+TERV LE +A AG GLS EEAAA + ANEETQAR+ AEMSALEERVDRR REEAR AEARGAMRRVSA VSAYTADLATRL+GL+SEHE+QG
Sbjct: 10 TVQVMHSQIALLRQTVLDLRETKAQEIGDLRRQIDALETSGPGNAKARFDDIDSRLRAVEQQPGG-------------------------------------------------------------------------------------------------------------SGM----------VGTIGEREDRIESRVAALERKLLADAEGAKAAAAERKRRLLDRLMRQTIVLRNTIIAEGMAAGTEGRSEGESEAAQEEDCWAGVREDMVRGGRGSGGVGQAADEEE-----LILTARARLAWLESCAENTPSSGGIAGSGPAGSGDDAETERNDQPATSDNGDIDLVVPEEGGTPASGMSDDVGQRRAAGALPAEAWTAPG-DEGXXXXXXXXXXXXXXXXXXXXXGDADGEVARLWRWMDEIESRIYRRCSDRGRLPSRGAGDVVTSKAGEVTGADLQNLQDSVELSSLAMGNKLEEGLATLDERMNLLEGNVRSVKARALSRSALDAVSAAXXXXXXXXXXXXXXXXXXXXXXXXXXDSRIEEILAGVLGDEIPTLRRDLGGVTERVAHLEATVA-EDGAGGAGLSVEEAAAAAADAASRLANEETQARLAAEMSALEERVDRRAREEARXXXXXXXXAEARGAMRRVSATVSAYTADLATRLDGLKSEHEEQG 566 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig979.16104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig979.16104.1 >prot_P-lacustris_contig979.16104.1 ID=prot_P-lacustris_contig979.16104.1|Name=mRNA_P-lacustris_contig979.16104.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=717bp MTSGEADRESGALDVQQQADEEASSARDGEPVHDDITLSSKLEEAWPRMEback to top mRNA from alignment at P-lacustris_contig979:53397..67348- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig979.16104.1 ID=mRNA_P-lacustris_contig979.16104.1|Name=mRNA_P-lacustris_contig979.16104.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=13952bp|location=Sequence derived from alignment at P-lacustris_contig979:53397..67348- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig979:53397..67348- >mRNA_P-lacustris_contig979.16104.1 ID=mRNA_P-lacustris_contig979.16104.1|Name=mRNA_P-lacustris_contig979.16104.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=4302bp|location=Sequence derived from alignment at P-lacustris_contig979:53397..67348- (Pleurocladia lacustris SAG_25_93)back to top |