mRNA_P-lacustris_contig979.16103.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig979.16103.1
Unique NamemRNA_P-lacustris_contig979.16103.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig979.16103.1 vs. uniprot
Match: A0A6H5JU08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU08_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 2.520e-107
Identity = 214/384 (55.73%), Postives = 246/384 (64.06%), Query Frame = 1 
Query:  307 GARRLQAPTSPTAAPVDIDRYLPECASIFVPTLAGDNMTGTYTFQGRYNDGRPVYTTDSGNHLFATTAAEAGVQSTSWFITQPEESSKFFLSLESDVFEPADLEGLQPWVRNNDPTCNACTTCSVCSAMIRVSCAALTADVSTPSPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASYGYSSTSAGTTTVNETSAVGDCVNLDIKNGADRSGTYAL-DMNG-GWIVLRNERSSYTAVGPNRTDVVFSIMMNVCSAGYGVVDAAWAEAVGDLPSTATVDAVFLKYAAENVGVDTVD-----------------CEVPVWL-VTDGAEDLETAGDFTFLSMSGSGDPSEATSWAKFTPATDTTRASLVENFWVDVGCADA 1398
            G RRLQ  ++  A        LP CAS+FVPT AGD +TGTY FQG Y+D RPVY   +GN  FA    E GV +T W++TQ   +S FFLSLES VFEPADLE LQPWVRNNDPTC +C +       + +SC+ALTAD     PTA       XXXXXXXXX                 A+          TT+ +TSAVG C NL I NG DR+G Y+L D++G G +V RN R SY AVG NRTDVVFS MMNVC++GYGVVDA WA  VG LP T+TV+AVFL Y AENVGVDT D                 CEVPVWL V DGAE L+ AG+ TFLS+SG  DPSEATSWAKFTPAT TTR +L ENFW+DVGCA A
Sbjct:   79 GGRRLQQASTDGA-------LLPACASLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNKFFAKD--EEGVPTT-WYVTQASPNSTFFLSLESAVFEPADLEDLQPWVRNNDPTCRSCIS------KLSMSCSALTADAI---PTAPETTTPAXXXXXXXXXAENENLTMSTAETVVPPATTPXXXXLPPDTTMADTSAVGGCANLKINNGEDRAGVYSLSDVDGEGGVVFRNGRPSYAAVGANRTDVVFSTMMNVCASGYGVVDADWANHVGYLPPTSTVNAVFLMYVAENVGVDTADDAAAAIATAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDVGCAAA 443
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BLAST of mRNA_P-lacustris_contig979.16103.1 vs. uniprot
Match: D7G0N9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N9_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 8.800e-101
Identity = 194/361 (53.74%), Postives = 225/361 (62.33%), Query Frame = 1 
Query:  370 LPECASIFVPTLAGDNMTGTYTFQGRYNDGRPVYTTDSGNHLFATTAAEAGVQSTSWFITQPEESSKFFLSLESDVFEPADLEG----LQPWVRNNDPTCNACTTCSVCSAMIRVSCAALTADVSTPSPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASYGYSSTSAGTTTVNETSAVGDCVNLDIKNGADRSGTYAL---DMNGGWIVLRNERSSYTAVGPNRTDVVFSIMMNVCSAGYGVVDAAWAEAVGDLPSTATVDAVFLKYAAENVGVDTVD----------CEVPVWL-VTDGAEDLETAGDFTFLSMSGSGDPSEATSWAKFTPATDTTRASLVENFWVDVGCADA 1398
            LP C+S+FVPT AGD +TGTY FQG Y+D RPVY   +GN  FA    E GV +T W+ITQ   +SKFFLSLES VFEPADL+     LQPWVRNNDPTC +C +       + +SC+A TADV   +P           X                        +     T    TT+ +TSAVG C NL I NG DR+G Y+L   D  GG +V RN R SY AVG +RTDVVFS  MNVC++GYGVVDA WA  V  LP T+TV+ VFL Y AENVGVDT D          CEVPVWL V DGAE L+ AG+ TFLS+SG  DPSEATSWAKFTPAT TTR +L ENFW+D GCADA
Sbjct:   92 LPACSSLFVPTGAGDELTGTYDFQGHYSDRRPVYAAANGNKFFAKD--EEGVPTT-WYITQASPNSKFFLSLESAVFEPADLKDPEDMLQPWVRNNDPTCGSCIS------KLHMSCSAWTADVIAAAPVTTTPAPNDPVXSSPAENENSTMSTAETVVPPATTPAPTDLPTD---TTMVDTSAVGGCANLKINNGEDRAGVYSLSGVDGEGG-VVFRNGRPSYAAVGADRTDVVFSTTMNVCASGYGVVDADWAVGVEYLPPTSTVNTVFLMYVAENVGVDTADDAAASSDNDGCEVPVWLLVADGAESLDAAGENTFLSVSGVDDPSEATSWAKFTPATSTTRPTLEENFWIDFGCADA 439
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig979.16103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JU08_9PHAE2.520e-10755.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0N9_ECTSI8.800e-10153.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig979contigP-lacustris_contig979:46177..47583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001700.1
Exons1
Model size1407
Cds size1407
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817409.7781947-CDS-P-lacustris_contig979:46176..475831622817409.7781947-CDS-P-lacustris_contig979:46176..47583Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 46177..47583 -
1693495046.1735623-CDS-P-lacustris_contig979:46176..475831693495046.1735623-CDS-P-lacustris_contig979:46176..47583Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 46177..47583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig979.16103.1prot_P-lacustris_contig979.16103.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig979 46177..47583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig979.16103.1

>prot_P-lacustris_contig979.16103.1 ID=prot_P-lacustris_contig979.16103.1|Name=mRNA_P-lacustris_contig979.16103.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=469bp
MHITAASFAAAVSVLLSLAARPCSGRTYVRGSVLTPETVVSNTRVSYGDS
EKIPRVSSSRDGQQAGKKESTGVRGAGSGSGQQHQVQQGRVGGRKKTSKK
LRGARRLQAPTSPTAAPVDIDRYLPECASIFVPTLAGDNMTGTYTFQGRY
NDGRPVYTTDSGNHLFATTAAEAGVQSTSWFITQPEESSKFFLSLESDVF
EPADLEGLQPWVRNNDPTCNACTTCSVCSAMIRVSCAALTADVSTPSPTA
APAAVAAGMGSGNSTSPSSSAHTSPTAAPTALPASYGYSSTSAGTTTVNE
TSAVGDCVNLDIKNGADRSGTYALDMNGGWIVLRNERSSYTAVGPNRTDV
VFSIMMNVCSAGYGVVDAAWAEAVGDLPSTATVDAVFLKYAAENVGVDTV
DCEVPVWLVTDGAEDLETAGDFTFLSMSGSGDPSEATSWAKFTPATDTTR
ASLVENFWVDVGCADAAA*
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mRNA from alignment at P-lacustris_contig979:46177..47583-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig979.16103.1 ID=mRNA_P-lacustris_contig979.16103.1|Name=mRNA_P-lacustris_contig979.16103.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1407bp|location=Sequence derived from alignment at P-lacustris_contig979:46177..47583- (Pleurocladia lacustris SAG_25_93)
ATGCACATAACAGCGGCATCCTTCGCGGCAGCAGTGTCGGTCCTTCTGAG
CTTGGCCGCAAGGCCTTGCTCAGGTCGCACCTACGTGCGGGGTTCGGTCT
TGACTCCAGAAACTGTTGTGTCGAACACGAGGGTGAGCTACGGAGACAGC
GAGAAGATCCCACGCGTGTCCAGCAGCAGAGATGGCCAACAAGCGGGGAA
GAAAGAGAGCACTGGTGTTCGCGGCGCCGGCAGCGGCAGTGGGCAACAAC
ATCAGGTGCAGCAAGGAAGAGTCGGGGGGCGTAAGAAGACCAGCAAAAAA
CTGAGAGGCGCCCGTAGGTTGCAGGCGCCGACTTCACCAACAGCTGCTCC
CGTGGACATCGACCGTTACTTGCCAGAATGCGCCAGCATCTTCGTACCCA
CCCTGGCCGGCGACAATATGACGGGCACGTATACTTTCCAAGGCCGTTAC
AACGACGGAAGGCCGGTCTACACCACCGATAGCGGCAACCACTTGTTCGC
CACTACAGCAGCGGAGGCGGGGGTCCAGTCCACGAGTTGGTTCATCACCC
AGCCAGAAGAATCTTCGAAGTTTTTCCTTTCCCTGGAGTCGGACGTTTTC
GAGCCGGCCGACCTGGAAGGTCTGCAGCCTTGGGTGAGAAACAACGACCC
CACGTGCAACGCGTGCACCACGTGCAGCGTGTGCTCCGCAATGATCCGCG
TTTCGTGCGCCGCCTTAACCGCAGACGTGTCAACACCATCGCCCACTGCG
GCACCTGCTGCTGTAGCCGCGGGTATGGGGAGTGGTAACTCGACATCACC
ATCTAGTTCCGCGCACACCTCGCCAACTGCGGCTCCTACCGCCCTTCCGG
CCTCTTATGGGTACAGCTCCACATCTGCGGGCACGACGACGGTCAACGAG
ACGTCAGCGGTTGGAGACTGCGTGAACCTCGACATAAAAAATGGCGCGGA
TCGATCCGGCACCTACGCCCTCGACATGAACGGCGGTTGGATCGTCCTCC
GGAACGAGCGGTCGAGCTACACCGCCGTCGGCCCCAACCGAACGGACGTG
GTCTTCTCTATCATGATGAATGTCTGCTCGGCGGGTTACGGCGTAGTGGA
CGCCGCCTGGGCGGAGGCCGTCGGAGACCTTCCCTCGACCGCTACCGTCG
ACGCCGTTTTCCTCAAGTACGCAGCCGAAAACGTCGGGGTGGACACTGTC
GACTGCGAGGTGCCCGTTTGGCTCGTGACCGACGGCGCTGAGGACCTCGA
GACCGCGGGGGATTTCACTTTTTTGTCCATGTCTGGATCCGGAGACCCTT
CCGAAGCTACCTCGTGGGCGAAATTCACCCCCGCAACTGACACAACACGC
GCGTCTCTGGTGGAGAACTTCTGGGTTGACGTCGGCTGCGCCGATGCCGC
AGCATAA
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Coding sequence (CDS) from alignment at P-lacustris_contig979:46177..47583-

>mRNA_P-lacustris_contig979.16103.1 ID=mRNA_P-lacustris_contig979.16103.1|Name=mRNA_P-lacustris_contig979.16103.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2814bp|location=Sequence derived from alignment at P-lacustris_contig979:46177..47583- (Pleurocladia lacustris SAG_25_93)
ATGCACATAACAGCGGCATCCTTCGCGGCAGCAGTGTCGGTCCTTCTGAG
CTTGGCCGCAAGGCCTTGCTCAGGTCGCACCTACGTGCGGGGTTCGGTCT
TGACTCCAGAAACTGTTGTGTCGAACACGAGGGTGAGCTACGGAGACAGC
GAGAAGATCCCACGCGTGTCCAGCAGCAGAGATGGCCAACAAGCGGGGAA
GAAAGAGAGCACTGGTGTTCGCGGCGCCGGCAGCGGCAGTGGGCAACAAC
ATCAGGTGCAGCAAGGAAGAGTCGGGGGGCGTAAGAAGACCAGCAAAAAA
CTGAGAGGCGCCCGTAGGTTGCAGGCGCCGACTTCACCAACAGCTGCTCC
CGTGGACATCGACCGTTACTTGCCAGAATGCGCCAGCATCTTCGTACCCA
CCCTGGCCGGCGACAATATGACGGGCACGTATACTTTCCAAGGCCGTTAC
AACGACGGAAGGCCGGTCTACACCACCGATAGCGGCAACCACTTGTTCGC
CACTACAGCAGCGGAGGCGGGGGTCCAGTCCACGAGTTGGTTCATCACCC
AGCCAGAAGAATCTTCGAAGTTTTTCCTTTCCCTGGAGTCGGACGTTTTC
GAGCCGGCCGACCTGGAAGGTCTGCAGCCTTGGGTGAGAAACAACGACCC
CACGTGCAACGCGTGCACCACGTGCAGCGTGTGCTCCGCAATGATCCGCG
TTTCGTGCGCCGCCTTAACCGCAGACGTGTCAACACCATCGCCCACTGCG
GCACCTGCTGCTGTAGCCGCGGGTATGGGGAGTGGTAACTCGACATCACC
ATCTAGTTCCGCGCACACCTCGCCAACTGCGGCTCCTACCGCCCTTCCGG
CCTCTTATGGGTACAGCTCCACATCTGCGGGCACGACGACGGTCAACGAG
ACGTCAGCGGTTGGAGACTGCGTGAACCTCGACATAAAAAATGGCGCGGA
TCGATCCGGCACCTACGCCCTCGACATGAACGGCGGTTGGATCGTCCTCC
GGAACGAGCGGTCGAGCTACACCGCCGTCGGCCCCAACCGAACGGACGTG
GTCTTCTCTATCATGATGAATGTCTGCTCGGCGGGTTACGGCGTAGTGGA
CGCCGCCTGGGCGGAGGCCGTCGGAGACCTTCCCTCGACCGCTACCGTCG
ACGCCGTTTTCCTCAAGTACGCAGCCGAAAACGTCGGGGTGGACACTGTC
GACTGCGAGGTGCCCGTTTGGCTCGTGACCGACGGCGCTGAGGACCTCGA
GACCGCGGGGGATTTCACTTTTTTGTCCATGTCTGGATCCGGAGACCCTT
CCGAAGCTACCTCGTGGGCGAAATTCACCCCCGCAACTGACACAACACGC
GCGTCTCTGGTGGAGAACTTCTGGGTTGACGTCGGCTGCGCCGATGCCGC
AGCATAAATGCACATAACAGCGGCATCCTTCGCGGCAGCAGTGTCGGTCC
TTCTGAGCTTGGCCGCAAGGCCTTGCTCAGGTCGCACCTACGTGCGGGGT
TCGGTCTTGACTCCAGAAACTGTTGTGTCGAACACGAGGGTGAGCTACGG
AGACAGCGAGAAGATCCCACGCGTGTCCAGCAGCAGAGATGGCCAACAAG
CGGGGAAGAAAGAGAGCACTGGTGTTCGCGGCGCCGGCAGCGGCAGTGGG
CAACAACATCAGGTGCAGCAAGGAAGAGTCGGGGGGCGTAAGAAGACCAG
CAAAAAACTGAGAGGCGCCCGTAGGTTGCAGGCGCCGACTTCACCAACAG
CTGCTCCCGTGGACATCGACCGTTACTTGCCAGAATGCGCCAGCATCTTC
GTACCCACCCTGGCCGGCGACAATATGACGGGCACGTATACTTTCCAAGG
CCGTTACAACGACGGAAGGCCGGTCTACACCACCGATAGCGGCAACCACT
TGTTCGCCACTACAGCAGCGGAGGCGGGGGTCCAGTCCACGAGTTGGTTC
ATCACCCAGCCAGAAGAATCTTCGAAGTTTTTCCTTTCCCTGGAGTCGGA
CGTTTTCGAGCCGGCCGACCTGGAAGGTCTGCAGCCTTGGGTGAGAAACA
ACGACCCCACGTGCAACGCGTGCACCACGTGCAGCGTGTGCTCCGCAATG
ATCCGCGTTTCGTGCGCCGCCTTAACCGCAGACGTGTCAACACCATCGCC
CACTGCGGCACCTGCTGCTGTAGCCGCGGGTATGGGGAGTGGTAACTCGA
CATCACCATCTAGTTCCGCGCACACCTCGCCAACTGCGGCTCCTACCGCC
CTTCCGGCCTCTTATGGGTACAGCTCCACATCTGCGGGCACGACGACGGT
CAACGAGACGTCAGCGGTTGGAGACTGCGTGAACCTCGACATAAAAAATG
GCGCGGATCGATCCGGCACCTACGCCCTCGACATGAACGGCGGTTGGATC
GTCCTCCGGAACGAGCGGTCGAGCTACACCGCCGTCGGCCCCAACCGAAC
GGACGTGGTCTTCTCTATCATGATGAATGTCTGCTCGGCGGGTTACGGCG
TAGTGGACGCCGCCTGGGCGGAGGCCGTCGGAGACCTTCCCTCGACCGCT
ACCGTCGACGCCGTTTTCCTCAAGTACGCAGCCGAAAACGTCGGGGTGGA
CACTGTCGACTGCGAGGTGCCCGTTTGGCTCGTGACCGACGGCGCTGAGG
ACCTCGAGACCGCGGGGGATTTCACTTTTTTGTCCATGTCTGGATCCGGA
GACCCTTCCGAAGCTACCTCGTGGGCGAAATTCACCCCCGCAACTGACAC
AACACGCGCGTCTCTGGTGGAGAACTTCTGGGTTGACGTCGGCTGCGCCG
ATGCCGCAGCATAA
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