mRNA_P-lacustris_contig979.16099.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig979.16099.1
Unique NamemRNA_P-lacustris_contig979.16099.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: A0A6H5KKA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKA5_9PHAE)

HSP 1 Score: 499 bits (1284), Expect = 2.680e-167
Identity = 268/332 (80.72%), Postives = 282/332 (84.94%), Query Frame = 3 
Query:  207 RRSMQEAWS-GRRGSGWRTQEAGEERREGKSVRRRKRTLCVVATVITGYAAASLPCGAGFVGPAVP---ARSIA--PSSVSLVGQGGG---RAGTRRRRASDTLRMVAMEPRVHVDSYYPTTTVAPARPPGKEGPHLPWTGSMAGPKFTLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTDKKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKHLAGIDFQPLFDDDSCRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVEEKLFPAFDEYLSLYISDLLKASAE 1175
            R S ++AWS GR GS W+ +   + RREG+  RRR+RTLC  + VI GYAAASLPCGAGFV P V     RS A  PS V     GGG   RAG RRRR SD + MVAMEPRV+      T TVAPARPPGKEGPHLPWTGSMAGP+F LTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTDKKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKHLAGIDFQPLFD+DSCR RYSDKLAPIKAKYPEFAQKMS RFYDSARFFSEEMLFGRYED+AIVEEKLFPAFDEYLSLYISDLLKA+ E
Sbjct:   23 RSSSRDAWSCGRAGSRWQQETGEQRRREGRITRRRRRTLCAFSAVIAGYAAASLPCGAGFVAPGVQQAGGRSAAAVPSYVRSAAPGGGETRRAGMRRRRPSDAVHMVAMEPRVNSKGSA-TETVAPARPPGKEGPHLPWTGSMAGPEFPLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTDKKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKHLAGIDFQPLFDNDSCRCRYSDKLAPIKAKYPEFAQKMSPRFYDSARFFSEEMLFGRYEDEAIVEEKLFPAFDEYLSLYISDLLKAAEE 353
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BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: D8LGZ4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ4_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 6.500e-83
Identity = 136/150 (90.67%), Postives = 142/150 (94.67%), Query Frame = 3 
Query:  726 ENTDKKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKHLAGIDFQPLFDDDSCRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVEEKLFPAFDEYLSLYISDLLKASAE 1175
            E T K A   SM+FASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKHLAGIDFQPLFDDDSCR+RYSDKLAPIKAKYPEFAQKMS RFYDSARFFSEEMLFGRYED+AIV+EKLFPAF+EYLSLYISDLLKA+ E
Sbjct:   32 ETTTKNACNTSMNFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKHLAGIDFQPLFDDDSCRNRYSDKLAPIKAKYPEFAQKMSPRFYDSARFFSEEMLFGRYEDEAIVDEKLFPAFEEYLSLYISDLLKAAEE 181
[Close]
BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: D8LGZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ3_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 1.950e-61
Identity = 130/205 (63.41%), Postives = 143/205 (69.76%), Query Frame = 3 
Query:  207 RRSMQEAWS-GRRGSGWRTQEAGEERREGKSVRRRKR-TLCVVATVITGYAAASLPCGAGFVGPAVP-----ARSIAPSSVSLVGQGGG---RAGTRRRRASDTLRMVAMEPRVHVDSYYPTT-TVAPARPPGKEGPHLPWTGSMAGPKFTLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTDKKARMLSMSFASPEVRK 788
            R S ++AWS  R GS WR QE GE+             TLC V+ VI GYAAASLPCGAGFV P V      A +  PS V     GGG   RAG RRRR SD +RMVAMEPRV+  S  P T TVAPARP GKEGPHLPWTGSMAGP+F LTYMPFMEHMLNVLARSFGEMTALPLADKLAFV+NTDKKARML   +   ++ +
Sbjct:   23 RSSTRDAWSCARGGSSWRKQETGEQXXXXXXXXXXXXXTLCAVSAVIAGYAAASLPCGAGFVAPGVQQAGRSAAAAVPSYVRSAAPGGGESRRAGMRRRRPSDAVRMVAMEPRVN--SKGPATETVAPARPAGKEGPHLPWTGSMAGPEFPLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVDNTDKKARMLRCCYYGDQLNR 225
[Close]
BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: A0A835YZG6_9STRA (Ferredoxin-dependent bilin reductase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZG6_9STRA)

HSP 1 Score: 207 bits (526), Expect = 4.800e-56
Identity = 136/299 (45.48%), Postives = 167/299 (55.85%), Query Frame = 3 
Query:  327 VATVITGYAAAS-LPCGAGFVGP--AVPARSIAPSSVSLVGQGGGRA-----GTRRRRA---SDTLRMVAMEPRVHVDSYYPTTTVAPARPPGKEGP------HLPWTGSMAGPKFTLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTD--KKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKHLAGIDFQPLFDDDSCRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVEEKLFPAFDEYLSLYISDLLKA 1166
            VA ++T    AS L   AGF G   A   RS AP   +        A     G  RRRA   S  L MVA E R           V+ AR   ++         LPW  S AG +  L YMPFM++ L  L     E+   P+ +++A   +    K  R+ S+ F  P +RK RLTYFDAG  VQV N V+YPDPS+D P+LG+DLI+FG KHLAGIDFQPL  D     RY   L  IKA+YP+ +Q MSARFYDSARFFS  MLF R+ED+ +V  +LFPAF EYLS Y+  L KA
Sbjct:   20 VAKLVTAVCVASALQTAAGFTGMRRASFGRSTAPVCATTQVHSARHACQVSSGVTRRRAPSRSAALTMVATEVR--------PAAVSAARQEQQQQDAASAEAFLPWIESCAGAEHPLLYMPFMDYSLEQLVSQL-ELQPTPMDEEMALQHSLHPAKPGRIASLLFNGPLIRKARLTYFDAGPAVQVFNMVVYPDPSIDAPILGVDLIAFGKKHLAGIDFQPLHADAGYADRYLSTLGDIKARYPDLSQTMSARFYDSARFFSPHMLFARFEDRDLVPSQLFPAFSEYLSEYVEMLSKA 309
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BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: A0A5J4YL15_PORPP (15,16-dihydrobiliverdin:ferredoxin oxidoreductase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YL15_PORPP)

HSP 1 Score: 180 bits (457), Expect = 2.980e-47
Identity = 93/195 (47.69%), Postives = 129/195 (66.15%), Query Frame = 3 
Query:  588 LPWTGSMAGPKFTLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTDKKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKHLAGI-DFQPLFDDDSCRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVEEKLFPAFDEYLSLYISDLLKAS 1169
            LP+  S+AG +F L +MPF+ H   V+  +F +++ LP  D+LAF  +T K AR+ S  + +PE RK+R TY DAG + QV N+V YPDP  D+PLLGID +SFG K +  I DFQPL  D +   +Y   LAP+KAKY   A +MSA+FYD   FFS+++ FGR+++   V E+LFPAF EYL +Y   +  A+
Sbjct:   66 LPYERSIAGEEFELLFMPFVLHQNKVMRDTF-QVSDLPFDDELAFQSSTKKAARIESWCYKTPEFRKIRSTYIDAGIQAQVFNSVWYPDPKYDLPLLGIDFLSFGKKKVICIMDFQPLTQDAAYLEKYISPLAPVKAKYKSLAGEMSAKFYDENVFFSKQLAFGRFDNAGPVMEELFPAFKEYLDVYFEHMQSAT 259
[Close]
BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: M2XA99_GALSU (15,16-dihydrobiliverdin:ferredoxin oxidoreductase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XA99_GALSU)

HSP 1 Score: 179 bits (454), Expect = 6.440e-47
Identity = 92/196 (46.94%), Postives = 128/196 (65.31%), Query Frame = 3 
Query:  594 WTGSMAGPKFTLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTDKKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKH-LAGIDFQPLFDDDSCRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVEEKLFPAFDEYLSLYISDLLKASAEE 1178
            W  S+AG    + Y PF+E M N L  SF  +   PL++ LA  +++ K AR+ S  +  P+ RK+RLTY DAG   QV NAV YP  SL++P+LG+D +SFGGK+ L  +DFQPL +D     +Y   L PI+ +Y + A +MS+RFYD  RFFS+E+LFGR++    + E+LFPAF EYL LYI+ L K + E+
Sbjct:   59 WKTSVAGSDIPMIYSPFLEDMQNTLFASFETVEDYPLSEFLASAQSSKKPARIESWCYQCPKFRKIRLTYLDAGVAAQVFNAVWYPISSLELPILGVDFLSFGGKNVLCVMDFQPLMNDQYYLDKYIQPLHPIRERYADLAGRMSSRFYDENRFFSKELLFGRFDSTKPIYERLFPAFREYLDLYIT-LAKQTVED 253
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BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: A0A7S3ENW0_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENW0_9RHOD)

HSP 1 Score: 176 bits (445), Expect = 8.890e-46
Identity = 89/198 (44.95%), Postives = 127/198 (64.14%), Query Frame = 3 
Query:  588 LPWTGSMAGPKFTLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTDKKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKH-LAGIDFQPLFDDDSCRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVEEKLFPAFDEYLSLYISDLLKASAEE 1178
            LPW  S+AG    + +MPF+E    V+  +   +  LP   +L+F  ++ KKA++ S +F S   RK+RLTY DAG   QV N+V YPDP  D+PLLG+D +SFG K  L  +DFQPL  + +   +Y + L PIK+KYP  A +M+ARFYD  +FFS+++ FGR+++   V E+LFPAF+EYL+ Y+     A A E
Sbjct:   46 LPWEKSIAGDDVEMLFMPFIELQNRVMFDTQKNLKDLPFESELSFQSSSRKKAKIESWNFQSDTFRKIRLTYIDAGIPAQVFNSVWYPDPKYDLPLLGVDFLSFGKKKILCVLDFQPLKQEKAYLEKYCEILDPIKSKYPSLAGQMTARFYDENQFFSKQLAFGRFDNPQPVMEELFPAFEEYLNTYVKMFKDAPATE 243
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BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: A0A7S0YZG3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YZG3_9CRYP)

HSP 1 Score: 167 bits (424), Expect = 2.680e-42
Identity = 84/190 (44.21%), Postives = 118/190 (62.11%), Query Frame = 3 
Query:  588 LPWTGSMAGPKFTLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTDKK--ARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFG-GKHLAGIDFQPLFDDDSCRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVEEKLFPAFDEYLSLYI 1148
            +PWT S+ G +  L YMPF+E     +  +F  +   P A+ L+F    +KK  A + S  F +   RK+R+TY DAG + QV N VIYP+   D+P+LGID +SFG  + LA +D QPL  D     RY   L PI++KY +   +MS++FYD ARFFS+E+LFG+++D + V E LFPAF EY   Y+
Sbjct:   96 IPWTESVGGKEHKLLYMPFVEWQYKYMKENFETLEDKPFAEPLSFQRTPEKKPPAVIESWQFKTEHFRKIRMTYIDAGVRAQVYNCVIYPEYKYDLPILGIDFLSFGKSRVLAILDLQPLTQDPDYLERYIQPLRPIRSKYEDLCGRMSSKFYDEARFFSKELLFGKFDDPSPVMESLFPAFKEYFEHYV 285
[Close]
BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: A0A7S0EA56_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EA56_9CRYP)

HSP 1 Score: 167 bits (423), Expect = 2.800e-42
Identity = 82/188 (43.62%), Postives = 119/188 (63.30%), Query Frame = 3 
Query:  588 LPWTGSMAGPKFTLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTDKKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKH-LAGIDFQPLFDDDSCRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVEEKLFPAFDEYLSLYI 1148
            LPW  S+AG +  L YMPF+E  L+ + ++F +M  LP  + L+   +T K A + S  + + E RK+RLTY DAG   QV N+V YP  + D P+ GID ++FG K  LA +D QPL  D +   +Y D L P++ KY E   +MS++FYD  RFFS+++LFGR+++   V + LFPAF EY+  Y+
Sbjct:   86 LPWKESVAGAEHKLLYMPFLEWQLDFMKKNFPDMKDLPFEEHLSKQTSTKKPAVIESWQYETKEFRKIRLTYIDAGQNAQVFNSVWYPRHTYDAPVFGIDFLAFGKKKVLAILDLQPLTQDPAYLEKYIDPLVPLRNKYEELCGRMSSKFYDETRFFSKQLLFGRFDNDEPVMKSLFPAFQEYMEYYL 273
[Close]
BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Match: A0A7S0M8X0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M8X0_9CRYP)

HSP 1 Score: 166 bits (421), Expect = 9.150e-42
Identity = 83/191 (43.46%), Postives = 124/191 (64.92%), Query Frame = 3 
Query:  588 LPWTGSMAGPKFTLTYMPFMEHMLNVLARSFGEMTALPLADKLAFVENTD--KKARMLSMSFASPEVRKVRLTYFDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFG-GKHLAGIDFQPLFDDDSCRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVEEKLFPAFDEYLSLYIS 1151
            +PW  S+AGP++ L YMPF+++M+  +  +  E+T +PL  +LA+  +T   K+A + S  F+S E RK+RLTY DAG++ QV N+V YP    D P+ GID +SFG  + LA +D QPL  DD    +Y D L P++ KY + A +MS +FYD  RFFS ++LFG++++   V   LFPA  EY+  Y++
Sbjct:   89 VPWQLSVAGPEYKLLYMPFLDYMVKFMRENL-ELTDIPLEAELAYQRSTGPKKEAMIESWQFSSAEFRKIRLTYIDAGEQAQVFNSVWYPRHGYDAPVFGIDFLSFGKSRVLAILDLQPLKQDDQYLQKYIDPLVPLRNKYEKLAGRMSGKFYDETRFFSRQLLFGKFDNDGPVMSDLFPAMKEYMDHYLA 278
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig979.16099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKA5_9PHAE2.680e-16780.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGZ4_ECTSI6.500e-8390.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LGZ3_ECTSI1.950e-6163.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YZG6_9STRA4.800e-5645.48Ferredoxin-dependent bilin reductase-domain-contai... [more]
A0A5J4YL15_PORPP2.980e-4747.6915,16-dihydrobiliverdin:ferredoxin oxidoreductase ... [more]
M2XA99_GALSU6.440e-4746.9415,16-dihydrobiliverdin:ferredoxin oxidoreductase ... [more]
A0A7S3ENW0_9RHOD8.890e-4644.95Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
A0A7S0YZG3_9CRYP2.680e-4244.21Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0EA56_9CRYP2.800e-4243.62Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0M8X0_9CRYP9.150e-4243.46Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig979contigP-lacustris_contig979:11305..17759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue5.2e-71
Seed eggNOG ortholog2880.D8LGZ4
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Ferredoxin-dependent bilin reductase
EggNOG OGs28II3@1,2S2CU@2759
Ec32 ortholog descriptionFerredoxin-dependent bilin reductase
Ec32 orthologEc-14_001370.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2343
Cds size1131
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817409.3376842-UTR-P-lacustris_contig979:11304..115071622817409.3376842-UTR-P-lacustris_contig979:11304..11507Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig979 11305..11507 +
1693495045.8022346-UTR-P-lacustris_contig979:11304..115071693495045.8022346-UTR-P-lacustris_contig979:11304..11507Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig979 11305..11507 +
1622817409.4040086-UTR-P-lacustris_contig979:16750..177591622817409.4040086-UTR-P-lacustris_contig979:16750..17759Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig979 16751..17759 +
1693495045.875983-UTR-P-lacustris_contig979:16750..177591693495045.875983-UTR-P-lacustris_contig979:16750..17759Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig979 16751..17759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817409.3491118-CDS-P-lacustris_contig979:11507..118011622817409.3491118-CDS-P-lacustris_contig979:11507..11801Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 11508..11801 +
1693495045.8133755-CDS-P-lacustris_contig979:11507..118011693495045.8133755-CDS-P-lacustris_contig979:11507..11801Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 11508..11801 +
1622817409.3618014-CDS-P-lacustris_contig979:12281..125411622817409.3618014-CDS-P-lacustris_contig979:12281..12541Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 12282..12541 +
1693495045.8265872-CDS-P-lacustris_contig979:12281..125411693495045.8265872-CDS-P-lacustris_contig979:12281..12541Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 12282..12541 +
1622817409.3727646-CDS-P-lacustris_contig979:14544..147511622817409.3727646-CDS-P-lacustris_contig979:14544..14751Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 14545..14751 +
1693495045.8373897-CDS-P-lacustris_contig979:14544..147511693495045.8373897-CDS-P-lacustris_contig979:14544..14751Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 14545..14751 +
1622817409.383163-CDS-P-lacustris_contig979:16024..161381622817409.383163-CDS-P-lacustris_contig979:16024..16138Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 16025..16138 +
1693495045.8534186-CDS-P-lacustris_contig979:16024..161381693495045.8534186-CDS-P-lacustris_contig979:16024..16138Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 16025..16138 +
1622817409.3935387-CDS-P-lacustris_contig979:16494..167501622817409.3935387-CDS-P-lacustris_contig979:16494..16750Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 16495..16750 +
1693495045.866813-CDS-P-lacustris_contig979:16494..167501693495045.866813-CDS-P-lacustris_contig979:16494..16750Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig979 16495..16750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig979.16099.1prot_P-lacustris_contig979.16099.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig979 11508..16750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig979.16099.1

>prot_P-lacustris_contig979.16099.1 ID=prot_P-lacustris_contig979.16099.1|Name=mRNA_P-lacustris_contig979.16099.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=377bp
MRRSMQEAWSGRRGSGWRTQEAGEERREGKSVRRRKRTLCVVATVITGYA
AASLPCGAGFVGPAVPARSIAPSSVSLVGQGGGRAGTRRRRASDTLRMVA
MEPRVHVDSYYPTTTVAPARPPGKEGPHLPWTGSMAGPKFTLTYMPFMEH
MLNVLARSFGEMTALPLADKLAFVENTDKKARMLSMSFASPEVRKVRLTY
FDAGDKVQVLNAVIYPDPSLDMPLLGIDLISFGGKHLAGIDFQPLFDDDS
CRSRYSDKLAPIKAKYPEFAQKMSARFYDSARFFSEEMLFGRYEDKAIVE
EKLFPAFDEYLSLYISDLLKASAEEATRLQRPGRACSTATARMTSTTLSA
IQRMACFATTSANHTARSLWTTSCSN*
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mRNA from alignment at P-lacustris_contig979:11305..17759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig979.16099.1 ID=mRNA_P-lacustris_contig979.16099.1|Name=mRNA_P-lacustris_contig979.16099.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6455bp|location=Sequence derived from alignment at P-lacustris_contig979:11305..17759+ (Pleurocladia lacustris SAG_25_93)
GCATTATATGCATACATCGTCTCGTGGTGCTGACGAGAACAATCACATCG
CTGGATTTGTTTCCACGACGCGCGAGAGAGGGGGACGACGAGAGGGGCGT
GGCTCGTACGTAGCACACACGATAGCCTAGCCTCTCTTCTTCATTTCCTT
CTCTGTCCTCCCTCTTATCGTTAGTTGCCGGAGGCGAAGCTCATACGGAC
AACATGAGGAGGAGCATGCAAGAGGCTTGGTCGGGTCGGAGAGGGAGCGG
CTGGCGAACGCAAGAGGCGGGCGAGGAGCGGAGAGAGGGAAAGAGTGTCC
GGAGAAGGAAACGAACGCTCTGCGTAGTTGCTACTGTCATCACGGGATAT
GCCGCGGCTTCGCTACCGTGCGGGGCGGGCTTCGTGGGACCCGCTGTGCC
GGCCCGATCGATAGCACCGTCTTCAGTTTCGCTGGTTGGGCAAGGGGGCG
GGAGAGCAGGAACGCGCAGAAGACGGGCATCTGACACACTACGGATGGTG
AGAGAAAAGCTCATGCTACTGAAGCATGAGGGTGGTAATTAGCACACATG
GTGATGCATGCACCGCTGTTCTTCGTTCATTGGAGATTTGACTTGACTTG
CACATACTGCTGTATCTGTATTACAAGTAATTTAGTAGGACACGCGTGAA
AACAACTCAACAACGACGATCGCATGGTGCAAATTTTCAAGGCACGTTGT
TCTGTACTTTGTAGAGCTTTGTTGCATGTAAAGAATTTCCCCCCCCTACT
GCTCGAATGCACCTTCAATTTTTCTCCCCACCTGTTCCGCGATGGAGCTG
TATGCTCTCTGACATGCATGGGTTTGACGAAGAGAAGGATTCGAAGTGCT
CTGCCGCGTGTGTTCTAAGAGCATATACCTCCTGCTGGATGCCTCGCTGA
CATTTTGATTGATGAATTGAGGACGAGCGTTGCCGAGTTTCCTAATGTGG
TAGCGCGTACTGCATGTGCCGTGGCAGGTTGCAATGGAGCCTCGAGTGCA
TGTCGATTCGTACTACCCGACCACAACGGTAGCGCCGGCACGGCCGCCTG
GCAAGGAGGGGCCGCACCTGCCCTGGACGGGCTCGATGGCGGGCCCCAAG
TTCACCCTCACGTACATGCCCTTCATGGAGCACATGCTGAACGTGCTGGC
GCGCTCTTTCGGGGAGATGACTGCGCTGCCGCTGGCGGACAAGCTGGCCT
TCGTTGAGAACACCGACAAGAAGGCGCGCATGTTGAGGTGAGGTTAGCTT
GGCTTAGTTTGCCCCCAGCGTCGTTTTGTCTCCCTGTTAACTTGTCAGCG
GACACGTGCACGAGAGTTGTATACAAAGGCCTTTACACTTGGAGCTTGCC
AGCGGTGTTCTTGTACCACACTAGCTGTGCAGAACTTCTAATTTCTCTCG
ATAAATATATTCATGAGGTGGTGTCGAGTGTGCCATCCATCGATTGTGCG
CTGAACTGAAATTCGCTGACGAGGATACAAAGCAATTTTCGTCCGGACCG
AAAGTCTGTCATATACGGAGTAATCATGAGACAAAACAGAGACAGGATAA
GCACTCATATGCATATGATCCGAAGAGGGTGCTGTCGCTGCTGATGCATC
GCTGCTTCTCAGCACTGCTGCGTGGTTGTTTTCCTGCGTGGACTGAATGC
ACTCTCCCAGTCTCCCAGCCAACGGGCAGCAGGTTTTTGCTGTCAGCGAC
CAAGTCAAGCCACCTCCAAAACAAATTGCATCATGTCTACCGCGTTCGGT
ACGTGAGCGCCTTGCTTTGCGCTGGTACGCAGCACGTTGTGGACGCATGA
GAAGATCCGGCAAAATCGAATCAGAAAGATTCCAAAGGTTGTTGGTTCTC
CGGAACTCTTGCTTGCTAGTGTCGTCCTGCCTGCTCATTAGAAGCCCATC
ATTCCCCGGCATCATGAGCAAACCTAGCAACGCGCTGCCCGGTTCAACCG
CTGTGATTACCGTTTTGAAGCTGGCGTGTGTCTCTTGAACTAGCGCCGAC
CGCGCTAACCAGCTGGCCAACAAAAGAAGAAGAGTAAAAAAAATATAAAA
TGAACGCCAGAACTCTCCCTTCTTGTGTGGGGGGTGTATGTCGAGCGCAA
AGGAGAGCGGTTCGGCGTTCGGATCGATAGAGCTTGCTAAGAGATGACAG
CAATACATAACCGAAACCGAACCAGTAGACCAGCCAGCGCTGATTGTTCT
AGTGGTTCGGTTCGTGGCTCTGTAAAGTTGTTCGTGAGGAGTCCACCCAA
CCTGGGTCCAATTCCGATGACCCGGCACTTTCGCTTCCGAGGAGAGTGCG
CTCCGATTTCCAGACGTGTTTTTACATCAAACTGCTGTTCATTTTAGTGT
TTTTTTACCTCGCTTCTTTGAACCCGCCACCTACCGTATACGCTAGGATG
TCCTAGGATTTTGGGGGCAGAAATGGGCACCTAGTTTGCGGAATTCGAAC
CCGCGGCTAGCTTTGAAGCCGAAATCAAACCATACACCCGTCAGCGCTGA
CTAGTCCAAGGGTTTGATATTGGCTTTCTATCGCCAAACGTCCTCCTTGG
CACCTACTTATCGCGATGATGTGCTTGGATCACTGTCCTGTAATGTAGAT
GTATGCTGGTCCCACCGCAATCTCCTTCCCCTTCATTTTTCGTCGAAGCT
GGACACAACTTAGAGGTAGCGCAGGGGAGATTTCACGTTAGAACAAAAGA
TGAATCCACCTCCTTTTTTTTTATTGTCCCCCTGTGGTAGGACAACTTCA
GCAAACAAGGACTACCTCTCGAGGGTAACTCAATAACTCAACGGAGATCA
CGGTACTCCTCTTCGCTACGTTCGGCCCGTTGCGACAGTAGTCCCCGTAC
TCTGTATGTGTAAACCCTGCAACCCTGCCCCCCGCATTATATACATATAT
ATATACATACACCATACGTCAGTATCCGCAGCAGCTGCGAAGTTATCGTA
CCTGTTGTGTAGGGGAACGAGCAACCCAAGCAGTGAAGTGCAGTGGTACA
TCGTAAATTGGGCCGGCATGAAGGGGTAAATAGAGACTCTGGTGAGTTGC
ACAGCAATTCCGTAACTGCTGTACAGACACCAGCGACGAACGAACCACAC
TTTGGCTTCAACCATTAGAGGCTCGTTCCCTTTATGCAATGTTGTGCATC
GACTTCTTTTTGCCTCACCGACCTAACTTTTTTGTCACGATAAATACGAA
AAAGCTCGCTTGCCTCGCAACAATGCCCCAACAACGACAGCATGAGCTTC
GCGAGCCCGGAAGTGCGCAAGGTGCGACTCACGTACTTCGATGCCGGGGA
CAAGGTTCAGGTCCTGAACGCCGTCATTTACCCGGACCCGTCCCTAGACA
TGCCCCTGCTTGGGATAGATCTCATTTCCTTTGGAGGCAAGCACCTGGCG
GGGATCGACTTCCAGCCGCTCTTCGACGACGACTCGTGCCGCTCAAGGTG
AGAATAAAGGTCGATCGAGAGGGAGAGAGAAGGAGACTCCAGTGTTGCTG
CTTTTTTTTTTTTTTAATACCCTCCTCGAGCACAATTCCCAAAAATGAAG
ACCCCGCTTGGACCCTCACCAAACAATTGTAGGGCAAATCAATAGGTCTC
GTCGGGCACTTTGTTGCTGCGACTGAGAGTTATATAGACCGCGAGATCTC
GAACGCCAGTTACGACATATAATATGTGCTCTATTCATGTAAGAAGAGGA
TCAGCCCTTGCTACAGTCGCAGAACCGGGTTTGTCAATTAATGTCGGGCT
CTACTTTGTTGTTATGGCAAAACTATGCCCCGTGGTTTCGAACAGTGGTA
CACATTTGACTCTACTGCTGTTGGACCCCGTTGCTCGGTTGGATTTTGAG
TCCGTACCGCCTGGCACGTTTGCCAATTTCTCCAGCCACTAGGCGCGAAG
GCGCCATTCGACGGGTGCAGCAGAAAGCCAAGCCTCAGCTGGTGTTGCCC
GTCCTTGGTTTTGGCTGCACGTTGGTTCGACAGTCGATTGATCCCCCGAA
AAATAAATACATCATCGATGGCAACCACTCCGCAGCTGCAAGTCCGTGTG
TCCAGTGACCCTCGTAACAAGCACAGATCGGGAAACTGGCACGATACCTC
TTTTGAGTATGTTTGTTTATCGCCCATCTTGTTTCAGCGTCCACGCACTG
TAGGGGTAGCGCCAGGCCTCAATGAGTGTCATGACCGCTTGCCCGGGGAT
CGTGAGGGAAAATTCTCCCGTTGTGAAGGGAAGCCTTCATCTCTTTATGG
TGTTTTTTTGGAGCTGGTTCTCACCGGTTTTCGCCCCCGGAGCACCACGA
ACACCCTCTTCTCTTTCTATTCGGGCCCATCCGAATCTCAGCTACTCGGA
GGTGCCTTCATACATCACGGCTGTGCGCTGTAGCCGCCACAGTGCAGGAA
GCAAAAAAATCCCAGCGTAACAACGCGGACTCTCACAGTAGCGTTATCTT
GAGTTCTTGACCTCCCCTCTCCCCGCTCCCTCACCGTTTCAAGAACGCGC
GCGTTTGCTGTTGAGAAAGCAATCAAACAGGAAGATGTTCGTGTGCACAG
CCACTGGAACTGCGAGAAGTGGCCCTGATTTTCTGTATTTGCTGGCAGGA
ATTCCTAGCTAGACATGTGGCTCTGTGTGGTGGTCAGCTTCACCACAAGA
GCAGCCGTAGTGGCTGACGAACCCTCACATCTCACTGCGACGGTTTATCC
CGACAACATCAATATTCCAGGTACTCGGACAAGCTGGCGCCCATCAAGGC
CAAATACCCGGAGTTCGCCCAGAAGATGTCGGCGCGCTTTTACGACAGCG
CGCGATTTTTCAGTGAGGAGATGCTATTCGGAAGGTGCGTGATCTTCGGT
CGCGGACTGCCCCTCCCCTCTCCCCATGGGGCCGGGTGTAACACGTTTTC
GAAGGGACGATCTTTGAGTCGTGACAAATCTCTCGTTCTTGTTTGACAGG
CACGCAAAAGGTGTGGGAAAAATCTCTGCAAACAGTGGCACGAGTTCCCC
TACCACGCGGCTTCTCGACAGGTCTTTGACGCAGATAACGCCTACTGTCG
TTTGAAACACAAGATGAGCACACGGCAACTCCTCCCCCCGACCTAGCCGT
CTTTCGCTTTGCCTTTATGCGAACCCTTCGCGGTATCGCCGTACACGCTT
GCTTGGTGTTTCCCTTTTTCTTGAACACACCCACTCACAGGTACGAAGAC
AAGGCTATCGTAGAGGAGAAGCTCTTCCCGGCCTTCGACGAGTACCTCTC
CCTGTACATTTCCGATCTGCTCAAGGCTTCCGCAGAGGAGGCAACGCGTC
TCCAGAGGCCCGGGCGCGCGTGCTCGACCGCCACCGCGCGTATGACCAGT
ACAACGCTGAGCGCGATCCAGCGCATGGCCTGTTTCGCAACTACTTCGGC
GAACCATACAGCGAGGAGTTTATGGACAACTTCTTGTTCGAATTGAGCAC
CAGACCAGTCGGCGGATACCCCAAGGGGTTTCTCGTGGGGGAGGCGGAGA
TGGCGGCCGGCCAGCGGGAGGGAATCCGCACGCGTGACGAATGGCCGTTT
ACTTGTGGGTGTGATAGCATTTTACATGTGGGACTCGGCGAGCGATGATG
ACACGCCTGCTGTTTAGATGAGGTGGGGTGGGCCCAAATAAAGCGCATTA
GATCGCGGCATCTTTCACAGCTGTTGACGAGCGTGTGGTGTACTGTAGAG
GGAGAAAGACCTTTTTGATGGTTGAGTTGGGTTAGACTCGGTTATACATT
CAGAGGAGTCCTCTGGAGTCCTCGTTTTTTGTTGCTGTTGTATTGGATTA
GAGATAACGCGGTGACACGCTCGCGGGGGAGAGAGGGAGGCTGGCGCGGA
GTACATATTTCCGTGGATTTTTCAACACCCCAAGAGGGATAGTAACTATC
ATACCCTGCTTTGCACATGAAGCGGAATGGTCTGCAGCGTGGGCGTTCTT
CCGCAATCTGTTTTGGAGCATCCTGAATTTCGTTGTTTTAGAACTGATTA
GCTGATCAGCTCGTGTGTGTGAAGTGTATGCAGGGTGTGCGTGTGTGTAC
AAAAAAATATTCGAGGTGCAGTAGGTACGTACGAGGCATTCAGCAACAAC
TACACAAACAACGTCGCATCAATACACGTATCATCCAGCTACGGCGCACC
ACTCGGTTTATTTGTCGCACTCGAACATCATGATTCGGGATGACATGTAT
CTTGTGTGCTGGGCGAATCCACGATCAAACTGGTCGGGTGCTTTTTGTTT
CGGTTTAAGCACGCACTTGGAAGAGAGACGTTGCTCTCGTGCAGTGGGCA
CGGTATGGGGTAGGAGGCAAGAGTGGCGGCAAGTAATACGTGAGCATAAA
TAAGGAGACATGCGACGTTCACCGCATTATGGCTCCCCAGGTTGATCTTG
GTTTCACCTCTTCCTGCCCCTATGTGACTCGGGTTGACACATGGAGTGAT
TGACC
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Coding sequence (CDS) from alignment at P-lacustris_contig979:11305..17759+

>mRNA_P-lacustris_contig979.16099.1 ID=mRNA_P-lacustris_contig979.16099.1|Name=mRNA_P-lacustris_contig979.16099.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2262bp|location=Sequence derived from alignment at P-lacustris_contig979:11305..17759+ (Pleurocladia lacustris SAG_25_93)
ATGAGGAGGAGCATGCAAGAGGCTTGGTCGGGTCGGAGAGGGAGCGGCTG
GCGAACGCAAGAGGCGGGCGAGGAGCGGAGAGAGGGAAAGAGTGTCCGGA
GAAGGAAACGAACGCTCTGCGTAGTTGCTACTGTCATCACGGGATATGCC
GCGGCTTCGCTACCGTGCGGGGCGGGCTTCGTGGGACCCGCTGTGCCGGC
CCGATCGATAGCACCGTCTTCAGTTTCGCTGGTTGGGCAAGGGGGCGGGA
GAGCAGGAACGCGCAGAAGACGGGCATCTGACACACTACGGATGATGAGG
AGGAGCATGCAAGAGGCTTGGTCGGGTCGGAGAGGGAGCGGCTGGCGAAC
GCAAGAGGCGGGCGAGGAGCGGAGAGAGGGAAAGAGTGTCCGGAGAAGGA
AACGAACGCTCTGCGTAGTTGCTACTGTCATCACGGGATATGCCGCGGCT
TCGCTACCGTGCGGGGCGGGCTTCGTGGGACCCGCTGTGCCGGCCCGATC
GATAGCACCGTCTTCAGTTTCGCTGGTTGGGCAAGGGGGCGGGAGAGCAG
GAACGCGCAGAAGACGGGCATCTGACACACTACGGATGGTTGCAATGGAG
CCTCGAGTGCATGTCGATTCGTACTACCCGACCACAACGGTAGCGCCGGC
ACGGCCGCCTGGCAAGGAGGGGCCGCACCTGCCCTGGACGGGCTCGATGG
CGGGCCCCAAGTTCACCCTCACGTACATGCCCTTCATGGAGCACATGCTG
AACGTGCTGGCGCGCTCTTTCGGGGAGATGACTGCGCTGCCGCTGGCGGA
CAAGCTGGCCTTCGTTGAGAACACCGACAAGAAGGCGCGCATGTTGAGGT
TGCAATGGAGCCTCGAGTGCATGTCGATTCGTACTACCCGACCACAACGG
TAGCGCCGGCACGGCCGCCTGGCAAGGAGGGGCCGCACCTGCCCTGGACG
GGCTCGATGGCGGGCCCCAAGTTCACCCTCACGTACATGCCCTTCATGGA
GCACATGCTGAACGTGCTGGCGCGCTCTTTCGGGGAGATGACTGCGCTGC
CGCTGGCGGACAAGCTGGCCTTCGTTGAGAACACCGACAAGAAGGCGCGC
ATGTTGAGCATGAGCTTCGCGAGCCCGGAAGTGCGCAAGGTGCGACTCAC
GTACTTCGATGCCGGGGACAAGGTTCAGGTCCTGAACGCCGTCATTTACC
CGGACCCGTCCCTAGACATGCCCCTGCTTGGGATAGATCTCATTTCCTTT
GGAGGCAAGCACCTGGCGGGGATCGACTTCCAGCCGCTCTTCGACGACGA
CTCGTGCCGCTCAAGCATGAGCTTCGCGAGCCCGGAAGTGCGCAAGGTGC
GACTCACGTACTTCGATGCCGGGGACAAGGTTCAGGTCCTGAACGCCGTC
ATTTACCCGGACCCGTCCCTAGACATGCCCCTGCTTGGGATAGATCTCAT
TTCCTTTGGAGGCAAGCACCTGGCGGGGATCGACTTCCAGCCGCTCTTCG
ACGACGACTCGTGCCGCTCAAGGTACTCGGACAAGCTGGCGCCCATCAAG
GCCAAATACCCGGAGTTCGCCCAGAAGATGTCGGCGCGCTTTTACGACAG
CGCGCGATTTTTCAGTGAGGAGATGCTATTCGGAAGGTACTCGGACAAGC
TGGCGCCCATCAAGGCCAAATACCCGGAGTTCGCCCAGAAGATGTCGGCG
CGCTTTTACGACAGCGCGCGATTTTTCAGTGAGGAGATGCTATTCGGAAG
GTACGAAGACAAGGCTATCGTAGAGGAGAAGCTCTTCCCGGCCTTCGACG
AGTACCTCTCCCTGTACATTTCCGATCTGCTCAAGGCTTCCGCAGAGGAG
GCAACGCGTCTCCAGAGGCCCGGGCGCGCGTGCTCGACCGCCACCGCGCG
TATGACCAGTACAACGCTGAGCGCGATCCAGCGCATGGCCTGTTTCGCAA
CTACTTCGGCGAACCATACAGCGAGGAGTTTATGGACAACTTCTTGTTCG
AATTGAGTACGAAGACAAGGCTATCGTAGAGGAGAAGCTCTTCCCGGCCT
TCGACGAGTACCTCTCCCTGTACATTTCCGATCTGCTCAAGGCTTCCGCA
GAGGAGGCAACGCGTCTCCAGAGGCCCGGGCGCGCGTGCTCGACCGCCAC
CGCGCGTATGACCAGTACAACGCTGAGCGCGATCCAGCGCATGGCCTGTT
TCGCAACTACTTCGGCGAACCATACAGCGAGGAGTTTATGGACAACTTCT
TGTTCGAATTGA
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