mRNA_P-lacustris_contig977.16086.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig977.16086.1
Unique NamemRNA_P-lacustris_contig977.16086.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig977.16086.1 vs. uniprot
Match: D7FNK9_ECTSI (YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK9_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 1.320e-58
Identity = 97/122 (79.51%), Postives = 105/122 (86.07%), Query Frame = 1 
Query:    1 KHLYAIHCVDDQSCGKAEGEPRGGSAKRMENYPAHKAYQQAASNPEDPRFINKVAAGPLVNETNDYMIGSCFLVEATREEAQKFADNDPFKKARATCEGVWGSISIERYVSVFGVNAHSGNL 366
            KHLYAIHC+DDQSCGKA+GEPRGGSAKRM NYPAHK YQ A +NPEDPRFINKV+AGPLV+E +DYMIGS FLV ATREEAQKF DNDPFKK     EGVW +IS+ERYVSV GV  HSGNL
Sbjct:    5 KHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKK-----EGVWSTISLERYVSVVGVKPHSGNL 121
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BLAST of mRNA_P-lacustris_contig977.16086.1 vs. uniprot
Match: A0A7S2V359_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V359_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.160e-31
Identity = 65/121 (53.72%), Postives = 83/121 (68.60%), Query Frame = 1 
Query:    1 KHLYAIHCVDDQSCGKAEGEPRGGSAKRMENYPAHKAYQQAASNPEDPRFINKVAAGPLVNETNDYMIGSCFLVEATREEAQKFADNDPFKKARATCEGVWGSISIERYVSV-FGVNAHSG 360
            K L+ IHCVDD S    +GE  GGS KRM  Y  HK YQ A +NPE+P +I K+AAGPL+ +   +MIGS F+VE+T+EEA  F +NDPF KA     GVW S++I RYVS+  G+ AH+G
Sbjct:   50 KQLWLIHCVDDDSSPLEDGETFGGSGKRMAVYAEHKVYQGATANPENPEYIRKLAAGPLLTDEGTHMIGSTFIVESTKEEAIAFNENDPFAKA-----GVWKSVNISRYVSIPAGLIAHAG 165
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BLAST of mRNA_P-lacustris_contig977.16086.1 vs. uniprot
Match: A0A315ENI1_9BURK (YCII domain-containing protein n=4 Tax=Limnohabitans TaxID=665874 RepID=A0A315ENI1_9BURK)

HSP 1 Score: 53.9 bits (128), Expect = 2.120e-5
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   70 GSAK-RMENYPAHKAYQQAASNPEDPRFINKVAAGPLVNETNDYMIGSCFLVEAT-REEAQKFADNDPFKKARATCEGVWGSISIERYV 330
            GSA+ R ++  AHKAY  AA           + +GPL+ + N+ + GSCFL+EA  + +   F +NDPF KA     GVW  + I  + 
Sbjct:   12 GSAEIRAKHVEAHKAYLSAAP-------FKILVSGPLLEDDNETINGSCFLIEAVDKAQLVNFNENDPFTKA-----GVWQQVEIRHFA 88
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BLAST of mRNA_P-lacustris_contig977.16086.1 vs. uniprot
Match: A0A2E6U228_9HYPH (YCII domain-containing protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E6U228_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 4.280e-5
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:   76 AKRMENYPAHKAYQQAASNPEDPRFINKVAAGPLVNETNDYMIGSCFLVE-ATREEAQKFADNDPFKKARATCEGVWGSISIERYVSVFG 342
            A R+EN   H AY       +         AGP +++  D MIG+  +++ ATR+EAQ FADNDP+ KA     G++ ++ I R+  + G
Sbjct:   14 ALRLENRNEHVAYVLGQDGVK--------TAGPFISDDGDTMIGTLLVLDVATRQEAQAFADNDPYNKA-----GLFEAVEIRRWNHLIG 90
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BLAST of mRNA_P-lacustris_contig977.16086.1 vs. uniprot
Match: UPI001A969D7C (YciI family protein n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A969D7C)

HSP 1 Score: 52.4 bits (124), Expect = 7.400e-5
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 1 
Query:    7 LYAIHCVDDQSCGKAEGEPRGGSAK-RMENYPAHKAYQQAASNPEDPRFINKVAAGPLVNETNDYMIGSCFLVE-ATREEAQKFADNDPFKKARATCEGVWGSISIERYVSVF 339
            LY  HC D           + GSA+ R  N P H AY ++  +         VAAGPL+ E    M+GS  +VE A    AQ+ A NDP+ KA     G++ ++ I  +  VF
Sbjct:    2 LYMFHCTD-----------KPGSAEVRAGNRPTHLAYLESLGD-------RLVAAGPLLTEDGQGMVGSLLIVECADGAAAQEIAANDPYAKA-----GLFETVEIRPWRRVF 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig977.16086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FNK9_ECTSI1.320e-5879.51YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A7S2V359_9STRA4.160e-3153.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A315ENI1_9BURK2.120e-537.08YCII domain-containing protein n=4 Tax=Limnohabita... [more]
A0A2E6U228_9HYPH4.280e-535.56YCII domain-containing protein n=1 Tax=Rhodobiacea... [more]
UPI001A969D7C7.400e-534.51YciI family protein n=1 Tax=Azospirillum sp. SYSU ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig977contigP-lacustris_contig977:60959..64324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue6.6e-07
Seed eggNOG ortholog1122214.AQWH01000008_gene1548
KEGG koko:K09780
Hectar predicted targeting categoryother localisation
EggNOG free text desc.YCII-related domain
EggNOG OGsCOG2350@1,COG2350@2
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-01_005090.1
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons3
Model size2276
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig977.16086.1prot_P-lacustris_contig977.16086.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig977 62866..64240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.9457817-UTR-P-lacustris_contig977:60958..628651622817407.9457817-UTR-P-lacustris_contig977:60958..62865Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig977 60959..62865 -
1693495044.7748337-UTR-P-lacustris_contig977:60958..628651693495044.7748337-UTR-P-lacustris_contig977:60958..62865Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig977 60959..62865 -
1622817408.000934-UTR-P-lacustris_contig977:64240..643241622817408.000934-UTR-P-lacustris_contig977:64240..64324Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig977 64241..64324 -
1693495044.8382523-UTR-P-lacustris_contig977:64240..643241693495044.8382523-UTR-P-lacustris_contig977:64240..64324Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig977 64241..64324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817407.9626331-CDS-P-lacustris_contig977:62865..629431622817407.9626331-CDS-P-lacustris_contig977:62865..62943Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 62866..62943 -
1693495044.7933958-CDS-P-lacustris_contig977:62865..629431693495044.7933958-CDS-P-lacustris_contig977:62865..62943Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 62866..62943 -
1622817407.9767327-CDS-P-lacustris_contig977:63664..638471622817407.9767327-CDS-P-lacustris_contig977:63664..63847Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 63665..63847 -
1693495044.8056664-CDS-P-lacustris_contig977:63664..638471693495044.8056664-CDS-P-lacustris_contig977:63664..63847Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 63665..63847 -
1622817407.9901023-CDS-P-lacustris_contig977:64216..642401622817407.9901023-CDS-P-lacustris_contig977:64216..64240Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 64217..64240 -
1693495044.8232076-CDS-P-lacustris_contig977:64216..642401693495044.8232076-CDS-P-lacustris_contig977:64216..64240Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig977 64217..64240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig977.16086.1

>prot_P-lacustris_contig977.16086.1 ID=prot_P-lacustris_contig977.16086.1|Name=mRNA_P-lacustris_contig977.16086.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=95bp
MENYPAHKAYQQAASNPEDPRFINKVAAGPLVNETNDYMIGSCFLVEATR
EEAQKFADNDPFKKARATCEGVWGSISIERYVSVFGVNAHSGNL*
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mRNA from alignment at P-lacustris_contig977:60959..64324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig977.16086.1 ID=mRNA_P-lacustris_contig977.16086.1|Name=mRNA_P-lacustris_contig977.16086.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3366bp|location=Sequence derived from alignment at P-lacustris_contig977:60959..64324- (Pleurocladia lacustris SAG_25_93)
AAGCATCTCTACGCGATACACTGCGTGGATGATCAGTCTTGCGGCAAGGC
AGAGGGAGAGCCTCGAGGAGGCTCAGCTAAGCGAATGGAAAACTATCCGG
CGCACAAGGTGTGATATGGTACTGGCAGTGGTAGCCGGCACCACCGGCCT
CAATCCCCTGCAGAAAAGCGCCGGAGGGTAGCCAGAGGGTAAACGCATAC
GCACACAGAGTTCGAGGTCTTCCAGTGATGCCTCTATCGACGTTGGTGCA
ACGTGACAAGATGCGCTTCATGTTTCTCCTGCTGTTTTGAATCGCTCGTC
AAGAACAGGCGTTGAGGAAAAGTACCCGACAAATCGTAAATATAGGCAAT
CAGGACCCCGAGAGAAGTTCGCTGCTGTGGTGTGGATCATTTTGGCAAAG
TGCTCCCTCCTCCGCGTCCCTTCTAAGTGCTGTCACAACCGCTTCTTGAT
GGTTGGTTCTCGATCTCGGACCGGTAGGCTTACCAGCAAGCAGCATCTAA
CCCGGAAGATCCGCGGTTCATCAACAAGGTGGCGGCTGGGCCGTTGGTCA
ACGAAACCAACGACTACATGATCGGCAGTTGCTTCTTGGTAGAAGCCACG
CGTGAAGAAGCTCAAAAATTTGCCGACAACGATCCTTTCAAGAAGGCAAG
AGCCACATGTGTTCCCGCTTGCGGTAGAACCGGTGAAGTCGTATGAGAAA
AGGTGACGTCCTTTCAGGAGGAGTTTGCCGAGTGCTTGGGGCGTCTGGTA
GATGACCAAGCGCCTGCAGGGCTAGTTGTGCGCCGGCACATTGGTCCGAT
ATTAAAATTCCCTGCCTAGCAATTTAGCTGTGCCTTTTCTGACCCCTCGA
TAGAGATTTTTCTCGACGCCAGTTTTGGGCCGCGTGGAAGCAGGTCGTTC
TGTGCGTTTGCTGGGTTTCGGTTCTATACTTTACCCACACACGATTGACT
GTGTTCACTGTGTACATTGTCTGCTGCTGCTAAGCTAGCAGCAGCAGCAC
CCCGTATCCTTATGCACGGTCGTATCAGTTCTCATGGTTATCGCGGTTTA
GTATTTCATCAAACGGGGCGTGACCACCAACAAAAGCCTTGCAAGCAATA
AGCGGCTTCAAATTCTATACGAGATTCCTCCTGTGGTCGTCCTGGCACAC
GGAGCGGATGTTATAAAGCCAAACATGTTGCTGCATTGTCTCAACCACAA
CGTTTCGTTTGCTTGTGTTGAAATGAAAGACGAGCAGACGTTCGGCCGCT
CAGTCATTCTCTGACCCATTCGTGATTCGTAGCACTCGTGACATACACGC
GAGATTAAATTAACGTCTGTGTCCTCCGCCCGTCGGTATGTTTTGGTTCT
CGACCGACTTCCCTCCAACTAAACGCAACAGGAAGGTGTGTGGGGTTCAA
TCAGCATCGAGCGTTACGTGTCGGTTTTCGGGGTCAACGCGCATTCCGGT
AACTTGTAAGATGACAAGCGAGAAGGTAATGGTAATGGTATTGTCTCTTC
GGGGATTCGACGAGTGGGCGAGACCCTCCCCCTCGCTAGCCCCGCGACCC
TTTCCTCCCGTCACCGAAGGTTAAGGCGTTTGGGTTTTCAAGGCGTTGTT
TCTGAGGGCCAACGATACGACACACCGTGTTTTTTTGGGATTGGCACGCT
TCTCAAAATTATTTGCTGTCCTCTGCGGGTACGAACGTTGGTGTACAGCA
CGGAAACCGCCTGCCTGAAGTGGCGTCGAGACATGAGGTGAAGGTTGCTC
GTTTTATTGTGGGCTCAGTAAACGAAGAAGGCGGTTAGTGTTATTTGAGC
ACGATTAGCCCGAACAAAACAAGCAACGGGGTGAGATTTTCCTTGCATGT
TTTCCCGCCTACGCAACAGTGCACAGGTTTCACATGGGGTGGTTTTGGGC
AATCTGTGCGGGTTGTTTCTAACGACGCGATCCACCTGATTCTGACACTA
TGCTTCTTGTTTCGTATGGGCATAGGCATCACACAGAGACCTGGTTGCAA
GCAGACCAATTTTCATTTCCGTTCGTTGATGCGCGGATTGTGTGTTTCAG
CTTGTTCGAAGGGTGACGTGCAATGGGGGCCTTGTTCCGAGGGGTAGCAA
ACGCGGAGGTGGCTTGTGTGTTGTTGTTGTCACGATGACCAAGAAATGGA
CACGGTCAGCAATGGTTTTGATGTAGGCATTCGATATCAGGAGAGAGGAA
ATTGCCCGCAGCTTGCGTGTAAACGTGTGAACATGGTGAAAACAACCTAC
CACTCGACTGGTTCTAAGCTGGCGGTTGCTACGTAGGGTTGGGCGATGTT
GTTTTTTAGGCCGAGGGTGTCCCCAGTGTACGACTGTATAATCCAGCAGC
AACGTTGAGAAGCCAACTCCGCCGAAAATGATTTGGACGGAAACGCCGTG
CATGACTACAGAGCCTAGGTCGCAATGGCAAGAGCAAGTGCTGCGAGCAT
TAAACGCAGTGTGCGCCCAGCCCATAGTAGCTCAAGTCTCTCCGACGGAA
TAGACAATTCTGGTCGCCTTCAAAACGATACACGGACCCTTGCCGGACCG
TGTTCAAGAAGTCGATCTCAAGCCACCGGCCAGATGTTGCTACACTCCGA
GTACGCTTCGGTAAGGAATTGAAAACTCTAGCCCCTCGCCAACTTTCAGC
AGCTTTCGCGAGGTGTAGCGGACAAAGGTCGTCCTGTGTCTGCTTTGGGT
CTTCTTTTTCAAGCTTTCGATCAACGTGCGCTTTTTTTTCTGGCTTTTTG
CTTCTTCGCTCTCCCTTTGCCGTCACATCTACCGCGACCACCCTCACTAG
AGCCTATTGAAAGAGGATCTGGCAGGTGTTACCAGCCTCGTATCTGAAAA
CCTCCTCTGACTTTCTGGCCCCTGGGCTTCGGGCATACTGCGCTGCTAAT
CAATCGTGTACCAAACCCCATCTCTATTTCTTGTCGTGGTTGACAGGGCG
GGTGATGCCAATGCTGCTCACAAAAATATTAATATTATTTTCTTATTTTG
CCTATTACGTCTCGGTTGCTGGTGATCGTCCTCGATCCTCATTTATTTAT
TTTTTTCCCGACTATTTTCTTTTCTTTGGCTCTGTTTTGTTTTGTTCTGT
TTGCTTGGCTTCGCGTGCCAATTGGGAGCGATGGGCTCTACCCCTCCCCC
CCTCTCGTTCGACATGTCGCCTGTGACTCCGGATCTCCTGGGGGCTCACC
TCTGTCTCTGTTTTTGTTTCCGTTTCTTTGCCTTGACTCTCTGGGTCCTT
TGTACCTTATTTTGTACCCCAGTGGGGTAGTCAGCTTGTGACCACGGAAG
TCGAACGCATCAGTTGGACCACGCACTAATAGAGATCGGAACGGTTTTTA
ATGTGAAGACGACGAC
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Coding sequence (CDS) from alignment at P-lacustris_contig977:60959..64324-

>mRNA_P-lacustris_contig977.16086.1 ID=mRNA_P-lacustris_contig977.16086.1|Name=mRNA_P-lacustris_contig977.16086.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=570bp|location=Sequence derived from alignment at P-lacustris_contig977:60959..64324- (Pleurocladia lacustris SAG_25_93)
ATGGAAAACTATCCGGCGCACAAGATGGAAAACTATCCGGCGCACAAGGC
TTACCAGCAAGCAGCATCTAACCCGGAAGATCCGCGGTTCATCAACAAGG
TGGCGGCTGGGCCGTTGGTCAACGAAACCAACGACTACATGATCGGCAGT
TGCTTCTTGGTAGAAGCCACGCGTGAAGAAGCTCAAAAATTTGCCGACAA
CGATCCTTTCAAGAAGGCAAGAGCCACATGTGCTTACCAGCAAGCAGCAT
CTAACCCGGAAGATCCGCGGTTCATCAACAAGGTGGCGGCTGGGCCGTTG
GTCAACGAAACCAACGACTACATGATCGGCAGTTGCTTCTTGGTAGAAGC
CACGCGTGAAGAAGCTCAAAAATTTGCCGACAACGATCCTTTCAAGAAGG
CAAGAGCCACATGTGAAGGTGTGTGGGGTTCAATCAGCATCGAGCGTTAC
GTGTCGGTTTTCGGGGTCAACGCGCATTCCGGTAACTTGTAAGAAGGTGT
GTGGGGTTCAATCAGCATCGAGCGTTACGTGTCGGTTTTCGGGGTCAACG
CGCATTCCGGTAACTTGTAA
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