mRNA_P-lacustris_contig975.16063.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig975.16063.1
Unique NamemRNA_P-lacustris_contig975.16063.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: D7G586_ECTSI (Dynein light chain roadblock n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G586_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.180e-60
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPNSK 294
            MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNP+SK
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 98          
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A836CL08_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL08_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.750e-53
Identity = 83/97 (85.57%), Postives = 93/97 (95.88%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPNS 291
            MSSEVEETLKRIQSHRGVKGVLI+N +GIPIRSN++QEDTDTY+ALISQL+FKANGI+RTLDE DSLTFLRLRS KHEIMVAPDKD+ LIV+QNPN+
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLIINQEGIPIRSNMNQEDTDTYAALISQLNFKANGIIRTLDETDSLTFLRLRSQKHEIMVAPDKDFTLIVVQNPNA 97          
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A482SBS1_9ARCH (Roadblock/LC7 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS1_9ARCH)

HSP 1 Score: 159 bits (401), Expect = 9.370e-49
Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPN 288
            MSSEVEETLKRIQSH+GVKGVLI+N +GIPIRSNLS EDT+ Y+AL+SQL+FKA+G+VR LDE D L FLR+RS KHEIMVAPDKDY+L+VIQNPN
Sbjct:    1 MSSEVEETLKRIQSHKGVKGVLIMNAEGIPIRSNLSPEDTENYAALVSQLAFKASGVVRCLDETDELAFLRIRSKKHEIMVAPDKDYVLVVIQNPN 96          
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A7S2FUR4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR4_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.990e-46
Identity = 74/96 (77.08%), Postives = 86/96 (89.58%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPN 288
            MS+EVEETLKRIQSHRGVKGVLI N++G+PIRSNL  ED  TYSAL+SQL+ KAN +VR LDEAD LTFLR+RS KHEIM+APDK+++LIVIQNPN
Sbjct:   38 MSTEVEETLKRIQSHRGVKGVLICNSEGVPIRSNLPAEDEQTYSALVSQLAMKANNVVRNLDEADELTFLRIRSKKHEIMIAPDKEFLLIVIQNPN 133          
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A7S1U8Y1_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Y1_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.510e-44
Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
            MS+ VEETLKRIQSHRGVKGVLI+N+DG+PIRS L+QE TD+Y+AL+SQL+FKA+ +VRTLDE D LTFLR+RS K EIMVAPD+DY+LIVIQ
Sbjct:    1 MSAAVEETLKRIQSHRGVKGVLIVNSDGVPIRSTLNQESTDSYAALLSQLAFKASSVVRTLDETDGLTFLRIRSNKEEIMVAPDRDYLLIVIQ 93          
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A7S2STB6_9STRA (Dynein light chain roadblock n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STB6_9STRA)

HSP 1 Score: 146 bits (369), Expect = 9.330e-44
Identity = 69/96 (71.88%), Postives = 83/96 (86.46%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPN 288
            MS EVEET+KRIQSHRGVKGV+I N++G+PIRSNL  ED   YSAL+SQL+ KA+ +VRTLDE D L FLR+RS KHE+MVAPDK+++LIVIQNPN
Sbjct:   10 MSMEVEETMKRIQSHRGVKGVVICNSEGVPIRSNLEPEDEQNYSALVSQLAIKASSVVRTLDETDDLAFLRIRSKKHEVMVAPDKEFLLIVIQNPN 105          
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: F0Y4U8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4U8_AURAN)

HSP 1 Score: 140 bits (354), Expect = 1.330e-41
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPNS 291
            MSSEVEETL+RIQSHRGVKGVLI++  G+PIRSNL  E+T+TY+AL+SQL+ KA+ +VRTLDE D LTF R+RS KHEIM+APD +Y+LIVIQ   S
Sbjct:    1 MSSEVEETLRRIQSHRGVKGVLIVSAQGVPIRSNLENEETNTYAALLSQLAMKASSVVRTLDETDELTFFRIRSKKHEIMIAPDAEYLLIVIQETAS 97          
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A8J2WXW4_9STRA (Dynein light chain roadblock n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXW4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 8.970e-40
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
            MSSEVEETLKRIQSHRGVKGVLI++ DG+PIRSNL  ++T TY+AL+SQL+ KA  +VR LD+ D L F R+RS KHEIMVAPD +Y+LIV+Q
Sbjct:    1 MSSEVEETLKRIQSHRGVKGVLIVSADGVPIRSNLDDDETQTYAALLSQLATKARNVVRVLDDQDELAFFRIRSNKHEIMVAPDPEYLLIVVQ 93          
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: C5KNE1_PERM5 (Roadblock, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KNE1_PERM5)

HSP 1 Score: 135 bits (340), Expect = 3.520e-39
Identity = 66/99 (66.67%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPNSKE 297
            + SEVEETL RI++H+GV G++ILN++G+PIRS L Q+ T  YSALISQL++KA  ++R LD  + LTFLRLRS KHEIMVAPDKDYILIVIQ+PN+ E
Sbjct:   14 LMSEVEETLNRIKTHKGVSGIVILNHEGVPIRSTLEQKYTLQYSALISQLTYKARSVIRDLDPHNDLTFLRLRSRKHEIMVAPDKDYILIVIQDPNAGE 112          
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A1Y2ATV3_9FUNG (Dynein light chain roadblock n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2ATV3_9FUNG)

HSP 1 Score: 132 bits (332), Expect = 3.380e-38
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1
Query:    7 SEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNP 285
            SEVEET+KR+QSH+GV+G++I+NNDGIPIRS L    T  YSALI+QL+ KA  +VR LD  + LTFLR+RS KHEIMVAPDK+YILIVIQNP
Sbjct:    2 SEVEETIKRLQSHKGVEGIVIVNNDGIPIRSTLDNNLTVQYSALITQLASKARSVVRDLDPQNDLTFLRIRSKKHEIMVAPDKEYILIVIQNP 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G586_ECTSI1.180e-6098.98Dynein light chain roadblock n=2 Tax=Ectocarpus Ta... [more]
A0A836CL08_9STRA1.750e-5385.57Dynein light chain roadblock n=1 Tax=Tribonema min... [more]
A0A482SBS1_9ARCH9.370e-4979.17Roadblock/LC7 domain-containing protein n=1 Tax=ar... [more]
A0A7S2FUR4_9STRA1.990e-4677.08Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1U8Y1_9STRA3.510e-4476.34Dynein light chain roadblock n=1 Tax=Phaeomonas pa... [more]
A0A7S2STB6_9STRA9.330e-4471.88Dynein light chain roadblock n=1 Tax=Rhizochromuli... [more]
F0Y4U8_AURAN1.330e-4170.10Dynein light chain roadblock n=1 Tax=Aureococcus a... [more]
A0A8J2WXW4_9STRA8.970e-4069.89Dynein light chain roadblock n=1 Tax=Pelagomonas c... [more]
C5KNE1_PERM53.520e-3966.67Roadblock, putative n=1 Tax=Perkinsus marinus (str... [more]
A0A1Y2ATV3_9FUNG3.380e-3869.89Dynein light chain roadblock n=3 Tax=Neocallimasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig975contigP-lacustris_contig975:15759..16058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.1
Seed ortholog evalue9.9e-46
Seed eggNOG ortholog2880.D7G586
KEGG koko:K10419
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dynein intermediate chain binding
EggNOG OGsKOG4115@1,KOG4115@2759
Ec32 ortholog descriptionputative: flagellar outer dynein arm light chain LC7
Ec32 orthologEc-14_006610.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04812
Exons1
Model size300
Cds size300
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817405.2878032-CDS-P-lacustris_contig975:15758..160581622817405.2878032-CDS-P-lacustris_contig975:15758..16058Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig975 15759..16058 +
1693495042.5591-CDS-P-lacustris_contig975:15758..160581693495042.5591-CDS-P-lacustris_contig975:15758..16058Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig975 15759..16058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig975.16063.1prot_P-lacustris_contig975.16063.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig975 15759..16058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig975.16063.1

>prot_P-lacustris_contig975.16063.1 ID=prot_P-lacustris_contig975.16063.1|Name=mRNA_P-lacustris_contig975.16063.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=100bp
MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQL
SFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPNSKE*
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mRNA from alignment at P-lacustris_contig975:15759..16058+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig975.16063.1 ID=mRNA_P-lacustris_contig975.16063.1|Name=mRNA_P-lacustris_contig975.16063.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=300bp|location=Sequence derived from alignment at P-lacustris_contig975:15759..16058+ (Pleurocladia lacustris SAG_25_93)
ATGTCTTCTGAGGTGGAGGAGACTCTCAAGCGAATCCAGTCACACCGGGG AGTAAAGGGCGTGCTGATCTTGAACAACGATGGAATCCCCATACGATCCA ACCTTAGCCAGGAAGACACCGACACGTACTCTGCGCTCATCAGCCAGCTG AGCTTCAAGGCGAACGGCATTGTACGAACGTTGGATGAGGCAGACAGCCT GACTTTTCTCAGACTGCGGAGCACGAAGCACGAAATTATGGTGGCGCCGG ATAAAGACTACATATTGATCGTCATCCAGAATCCGAACTCCAAGGAGTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig975:15759..16058+

>mRNA_P-lacustris_contig975.16063.1 ID=mRNA_P-lacustris_contig975.16063.1|Name=mRNA_P-lacustris_contig975.16063.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=600bp|location=Sequence derived from alignment at P-lacustris_contig975:15759..16058+ (Pleurocladia lacustris SAG_25_93)
ATGTCTTCTGAGGTGGAGGAGACTCTCAAGCGAATCCAGTCACACCGGGG
AGTAAAGGGCGTGCTGATCTTGAACAACGATGGAATCCCCATACGATCCA
ACCTTAGCCAGGAAGACACCGACACGTACTCTGCGCTCATCAGCCAGCTG
AGCTTCAAGGCGAACGGCATTGTACGAACGTTGGATGAGGCAGACAGCCT
GACTTTTCTCAGACTGCGGAGCACGAAGCACGAAATTATGGTGGCGCCGG
ATAAAGACTACATATTGATCGTCATCCAGAATCCGAACTCCAAGGAGTGA
ATGTCTTCTGAGGTGGAGGAGACTCTCAAGCGAATCCAGTCACACCGGGG
AGTAAAGGGCGTGCTGATCTTGAACAACGATGGAATCCCCATACGATCCA
ACCTTAGCCAGGAAGACACCGACACGTACTCTGCGCTCATCAGCCAGCTG
AGCTTCAAGGCGAACGGCATTGTACGAACGTTGGATGAGGCAGACAGCCT
GACTTTTCTCAGACTGCGGAGCACGAAGCACGAAATTATGGTGGCGCCGG
ATAAAGACTACATATTGATCGTCATCCAGAATCCGAACTCCAAGGAGTGA
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