mRNA_P-lacustris_contig975.16063.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: D7G586_ECTSI (Dynein light chain roadblock n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G586_ECTSI) HSP 1 Score: 189 bits (479), Expect = 1.180e-60 Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPNSK 294
MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNP+SK
Sbjct: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPHSK 98
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A836CL08_9STRA (Dynein light chain roadblock n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL08_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.750e-53 Identity = 83/97 (85.57%), Postives = 93/97 (95.88%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPNS 291
MSSEVEETLKRIQSHRGVKGVLI+N +GIPIRSN++QEDTDTY+ALISQL+FKANGI+RTLDE DSLTFLRLRS KHEIMVAPDKD+ LIV+QNPN+
Sbjct: 1 MSSEVEETLKRIQSHRGVKGVLIINQEGIPIRSNMNQEDTDTYAALISQLNFKANGIIRTLDETDSLTFLRLRSQKHEIMVAPDKDFTLIVVQNPNA 97
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A482SBS1_9ARCH (Roadblock/LC7 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBS1_9ARCH) HSP 1 Score: 159 bits (401), Expect = 9.370e-49 Identity = 76/96 (79.17%), Postives = 88/96 (91.67%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPN 288
MSSEVEETLKRIQSH+GVKGVLI+N +GIPIRSNLS EDT+ Y+AL+SQL+FKA+G+VR LDE D L FLR+RS KHEIMVAPDKDY+L+VIQNPN
Sbjct: 1 MSSEVEETLKRIQSHKGVKGVLIMNAEGIPIRSNLSPEDTENYAALVSQLAFKASGVVRCLDETDELAFLRIRSKKHEIMVAPDKDYVLVVIQNPN 96
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A7S2FUR4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR4_9STRA) HSP 1 Score: 154 bits (389), Expect = 1.990e-46 Identity = 74/96 (77.08%), Postives = 86/96 (89.58%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPN 288
MS+EVEETLKRIQSHRGVKGVLI N++G+PIRSNL ED TYSAL+SQL+ KAN +VR LDEAD LTFLR+RS KHEIM+APDK+++LIVIQNPN
Sbjct: 38 MSTEVEETLKRIQSHRGVKGVLICNSEGVPIRSNLPAEDEQTYSALVSQLAMKANNVVRNLDEADELTFLRIRSKKHEIMIAPDKEFLLIVIQNPN 133
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A7S1U8Y1_9STRA (Dynein light chain roadblock n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Y1_9STRA) HSP 1 Score: 147 bits (371), Expect = 3.510e-44 Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
MS+ VEETLKRIQSHRGVKGVLI+N+DG+PIRS L+QE TD+Y+AL+SQL+FKA+ +VRTLDE D LTFLR+RS K EIMVAPD+DY+LIVIQ
Sbjct: 1 MSAAVEETLKRIQSHRGVKGVLIVNSDGVPIRSTLNQESTDSYAALLSQLAFKASSVVRTLDETDGLTFLRIRSNKEEIMVAPDRDYLLIVIQ 93
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A7S2STB6_9STRA (Dynein light chain roadblock n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STB6_9STRA) HSP 1 Score: 146 bits (369), Expect = 9.330e-44 Identity = 69/96 (71.88%), Postives = 83/96 (86.46%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPN 288
MS EVEET+KRIQSHRGVKGV+I N++G+PIRSNL ED YSAL+SQL+ KA+ +VRTLDE D L FLR+RS KHE+MVAPDK+++LIVIQNPN
Sbjct: 10 MSMEVEETMKRIQSHRGVKGVVICNSEGVPIRSNLEPEDEQNYSALVSQLAIKASSVVRTLDETDDLAFLRIRSKKHEVMVAPDKEFLLIVIQNPN 105
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: F0Y4U8_AURAN (Dynein light chain roadblock n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4U8_AURAN) HSP 1 Score: 140 bits (354), Expect = 1.330e-41 Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPNS 291
MSSEVEETL+RIQSHRGVKGVLI++ G+PIRSNL E+T+TY+AL+SQL+ KA+ +VRTLDE D LTF R+RS KHEIM+APD +Y+LIVIQ S
Sbjct: 1 MSSEVEETLRRIQSHRGVKGVLIVSAQGVPIRSNLENEETNTYAALLSQLAMKASSVVRTLDETDELTFFRIRSKKHEIMIAPDAEYLLIVIQETAS 97
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A8J2WXW4_9STRA (Dynein light chain roadblock n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXW4_9STRA) HSP 1 Score: 136 bits (342), Expect = 8.970e-40 Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQ 279
MSSEVEETLKRIQSHRGVKGVLI++ DG+PIRSNL ++T TY+AL+SQL+ KA +VR LD+ D L F R+RS KHEIMVAPD +Y+LIV+Q
Sbjct: 1 MSSEVEETLKRIQSHRGVKGVLIVSADGVPIRSNLDDDETQTYAALLSQLATKARNVVRVLDDQDELAFFRIRSNKHEIMVAPDPEYLLIVVQ 93
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: C5KNE1_PERM5 (Roadblock, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KNE1_PERM5) HSP 1 Score: 135 bits (340), Expect = 3.520e-39 Identity = 66/99 (66.67%), Postives = 83/99 (83.84%), Query Frame = 1
Query: 1 MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNPNSKE 297
+ SEVEETL RI++H+GV G++ILN++G+PIRS L Q+ T YSALISQL++KA ++R LD + LTFLRLRS KHEIMVAPDKDYILIVIQ+PN+ E
Sbjct: 14 LMSEVEETLNRIKTHKGVSGIVILNHEGVPIRSTLEQKYTLQYSALISQLTYKARSVIRDLDPHNDLTFLRLRSRKHEIMVAPDKDYILIVIQDPNAGE 112
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Match: A0A1Y2ATV3_9FUNG (Dynein light chain roadblock n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2ATV3_9FUNG) HSP 1 Score: 132 bits (332), Expect = 3.380e-38 Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1
Query: 7 SEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLSFKANGIVRTLDEADSLTFLRLRSTKHEIMVAPDKDYILIVIQNP 285
SEVEET+KR+QSH+GV+G++I+NNDGIPIRS L T YSALI+QL+ KA +VR LD + LTFLR+RS KHEIMVAPDK+YILIVIQNP
Sbjct: 2 SEVEETIKRLQSHKGVEGIVIVNNDGIPIRSTLDNNLTVQYSALITQLASKARSVVRDLDPQNDLTFLRIRSKKHEIMVAPDKEYILIVIQNP 94 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig975.16063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig975.16063.1 >prot_P-lacustris_contig975.16063.1 ID=prot_P-lacustris_contig975.16063.1|Name=mRNA_P-lacustris_contig975.16063.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=100bp MSSEVEETLKRIQSHRGVKGVLILNNDGIPIRSNLSQEDTDTYSALISQLback to top mRNA from alignment at P-lacustris_contig975:15759..16058+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig975.16063.1 ID=mRNA_P-lacustris_contig975.16063.1|Name=mRNA_P-lacustris_contig975.16063.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=300bp|location=Sequence derived from alignment at P-lacustris_contig975:15759..16058+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig975:15759..16058+ >mRNA_P-lacustris_contig975.16063.1 ID=mRNA_P-lacustris_contig975.16063.1|Name=mRNA_P-lacustris_contig975.16063.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=600bp|location=Sequence derived from alignment at P-lacustris_contig975:15759..16058+ (Pleurocladia lacustris SAG_25_93)back to top |