mRNA_P-lacustris_contig971.16040.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig971.16040.1
Unique NamemRNA_P-lacustris_contig971.16040.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig971.16040.1 vs. uniprot
Match: D7FWZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWZ2_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.310e-35
Identity = 126/181 (69.61%), Postives = 130/181 (71.82%), Query Frame = 1 
Query:    1 MDGSRGATGAVDVGVSHLNMNINVIGGGHGLGSGLSGRDKSIGAGDSAASSSPPVATTAFRSSAAMAASSVNGGLPSGRSRSPGFDVDKPSASSXXXXXXXXXXXXXXXXXXXXXX-TG-APGAEGSRXXXXXXXXXXXXXXXXXXXXXXXXXXDNSNNMDHAFTGATLQRSTSAPPMSDH 537
            MDGSRGATGAVDVGVSHLNMNINVIGGGHGLGSGLS  DKS  AGDS  S               MA SS NGGLPSGRSRSPGFDVDKP+   XXXXXXXXXXXXXXXXX      TG APGA    XXXXXX           XXXXXXXXX +SNN+DHAF GA LQRSTSAPP+SDH
Sbjct:    1 MDGSRGATGAVDVGVSHLNMNINVIGGGHGLGSGLSAGDKSA-AGDSTVSXXXXXXXXXXXXXXXMATSSSNGGLPSGRSRSPGFDVDKPTTXXXXXXXXXXXXXXXXXXXAGATVVTGSAPGAX-XXXXXXXXWLGAGDGFAGSXXXXXXXXXSSSNNVDHAFAGAMLQRSTSAPPVSDH 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig971.16040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWZ2_ECTSI2.310e-3569.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig971contigP-lacustris_contig971:122..1460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_001120.1
Exons2
Model size555
Cds size555
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817402.110133-CDS-P-lacustris_contig971:121..5141622817402.110133-CDS-P-lacustris_contig971:121..514Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig971 122..514 -
1693495040.0561805-CDS-P-lacustris_contig971:121..5141693495040.0561805-CDS-P-lacustris_contig971:121..514Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig971 122..514 -
1622817402.1235971-CDS-P-lacustris_contig971:1298..14601622817402.1235971-CDS-P-lacustris_contig971:1298..1460Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig971 1299..1460 -
1693495040.067753-CDS-P-lacustris_contig971:1298..14601693495040.067753-CDS-P-lacustris_contig971:1298..1460Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig971 1299..1460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig971.16040.1prot_P-lacustris_contig971.16040.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig971 122..1460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig971.16040.1

>prot_P-lacustris_contig971.16040.1 ID=prot_P-lacustris_contig971.16040.1|Name=mRNA_P-lacustris_contig971.16040.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=185bp
MDGSRGATGAVDVGVSHLNMNINVIGGGHGLGSGLSGRDKSIGAGDSAAS
SSPPVATTAFRSSAAMAASSVNGGLPSGRSRSPGFDVDKPSASSSASEAA
ASNAAAAFLAGATAVVTGAPGAEGSRGSGGGWLGGGGAEDDFSTTAAAAG
RRDNSNNMDHAFTGATLQRSTSAPPMSDHVSLCF*
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mRNA from alignment at P-lacustris_contig971:122..1460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig971.16040.1 ID=mRNA_P-lacustris_contig971.16040.1|Name=mRNA_P-lacustris_contig971.16040.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1339bp|location=Sequence derived from alignment at P-lacustris_contig971:122..1460- (Pleurocladia lacustris SAG_25_93)
ATGGATGGCTCTCGGGGAGCCACGGGCGCCGTCGACGTTGGGGTGTCGCA
CCTCAATATGAACATCAATGTAATCGGAGGTGGTCACGGCCTAGGGAGCG
GCCTTAGCGGCCGAGACAAGAGCATTGGGGCAGGCGACTCGGCGGCCTCT
TCCTCTCCTCCGGTGGGTGTAGAAACGAGGCGAGAGTGGTGTGAGACAGT
AGCGATCTCCCTCCATAGCGTTCGGCTGATGGTTGTGATTTTCTCGGCTT
ATCTCGCTCGCTCTCTGTGTGGTGGACACATAACTGAGCTCATCTCTCTC
TCAGCCCTTCATCCCCATTCGATTTCGTTTGCATATGTTTTACAAAAAAA
AAATGCAAGCAAATACACACGACCTGTTAACAACCGAAAAGGAGATTGGC
TCTCGTGGCAACGAAATTGGCAGGTTGCTATTCTGCTGCTGCTGCTGCTG
CCACGGCGGCCTTTCCCAGACGCAACGTCGCGCGACACATTTTGCCAACA
GCACACGCACACCTTTGCTGGCCACACACACAAATCCATGCACCTGGGTG
TTTCTTTTGCGAGAAAAAAATCGTCATGTTTTTTTTTGGCCGCCACGCTG
GCTGTGTCCATGAACGGAGGCTGTGTATCTAGCATGCCCTGTCCCTGTCG
ATCCCCCGATCCTCCAAGCACTAGCATCATCCTCGCGCAAAGCCACGAAG
GTACGCGAATGTATTCGCTCAGAGAAGAATACAGACACAACGATACAAGG
GAACAACACGGCCTGATTTCGCCGCTCCTCGGCAGAGATCAGCCGAGTGT
TTTTTCCTTGGAACCCGAGCTGTCCGGCTTGTTGCGGAGCGTAGGAGGCA
AGCGGCAATTTTGCCCCATCGACAACAAACTAACCTTTTTCCGCCATCCG
CTCCCGCACCACGGGGTACACGCACGATTTCCACCAAAAACGACAGGTTG
CTACCACGGCCTTCCGCAGCAGCGCGGCCATGGCGGCATCGTCTGTCAAT
GGGGGACTGCCTAGTGGCCGATCACGGTCTCCCGGTTTCGACGTGGACAA
GCCCTCCGCCTCCTCGTCCGCAAGCGAAGCCGCCGCTAGCAACGCAGCAG
CAGCGTTTCTAGCCGGCGCAACGGCGGTCGTCACGGGCGCACCGGGGGCA
GAAGGTTCGAGGGGTAGTGGAGGAGGGTGGCTCGGAGGAGGCGGCGCCGA
AGATGACTTCTCGACAACAGCAGCTGCTGCAGGAAGAAGAGACAACAGCA
ACAACATGGACCACGCGTTCACGGGTGCCACGCTGCAGAGGTCTACGTCC
GCGCCCCCGATGTCTGACCATGTGAGCCTTTGTTTTTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig971:122..1460-

>mRNA_P-lacustris_contig971.16040.1 ID=mRNA_P-lacustris_contig971.16040.1|Name=mRNA_P-lacustris_contig971.16040.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1110bp|location=Sequence derived from alignment at P-lacustris_contig971:122..1460- (Pleurocladia lacustris SAG_25_93)
ATGGATGGCTCTCGGGGAGCCACGGGCGCCGTCGACGTTGGGGTGTCGCA
CCTCAATATGAACATCAATGTAATCGGAGGTGGTCACGGCCTAGGGAGCG
GCCTTAGCGGCCGAGACAAGAGCATTGGGGCAGGCGACTCGGCGGCCTCT
TCCTCTCCTCCGATGGATGGCTCTCGGGGAGCCACGGGCGCCGTCGACGT
TGGGGTGTCGCACCTCAATATGAACATCAATGTAATCGGAGGTGGTCACG
GCCTAGGGAGCGGCCTTAGCGGCCGAGACAAGAGCATTGGGGCAGGCGAC
TCGGCGGCCTCTTCCTCTCCTCCGGTTGCTACCACGGCCTTCCGCAGCAG
CGCGGCCATGGCGGCATCGTCTGTCAATGGGGGACTGCCTAGTGGCCGAT
CACGGTCTCCCGGTTTCGACGTGGACAAGCCCTCCGCCTCCTCGTCCGCA
AGCGAAGCCGCCGCTAGCAACGCAGCAGCAGCGTTTCTAGCCGGCGCAAC
GGCGGTCGTCACGGGCGCACCGGGGGCAGAAGGTTCGAGGGGTAGTGGAG
GAGGGTGGCTCGGAGGAGGCGGCGCCGAAGATGACTTCTCGACAACAGCA
GCTGCTGCAGGAAGAAGAGACAACAGCAACAACATGGACCACGCGTTCAC
GGGTGCCACGCTGCAGAGGTCTACGTCCGCGCCCCCGATGTCTGACCATG
TGAGCCTTTGTTTTTGAGTTGCTACCACGGCCTTCCGCAGCAGCGCGGCC
ATGGCGGCATCGTCTGTCAATGGGGGACTGCCTAGTGGCCGATCACGGTC
TCCCGGTTTCGACGTGGACAAGCCCTCCGCCTCCTCGTCCGCAAGCGAAG
CCGCCGCTAGCAACGCAGCAGCAGCGTTTCTAGCCGGCGCAACGGCGGTC
GTCACGGGCGCACCGGGGGCAGAAGGTTCGAGGGGTAGTGGAGGAGGGTG
GCTCGGAGGAGGCGGCGCCGAAGATGACTTCTCGACAACAGCAGCTGCTG
CAGGAAGAAGAGACAACAGCAACAACATGGACCACGCGTTCACGGGTGCC
ACGCTGCAGAGGTCTACGTCCGCGCCCCCGATGTCTGACCATGTGAGCCT
TTGTTTTTGA
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