mRNA_P-lacustris_contig97.16024.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig97.16024.1 vs. uniprot
Match: A0A6H5JR07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR07_9PHAE) HSP 1 Score: 525 bits (1351), Expect = 3.250e-159 Identity = 448/1012 (44.27%), Postives = 489/1012 (48.32%), Query Frame = 3
Query: 1572 AGAKTKDATTFTSGTDLATAALSFACAQARLDISTGKLMKVIAACAIPQLASTPLRDLANLSWAFAVQRQLDPDMMEGVGREIVSTRAAGRMTAKDASVFAWAYGMLGLRPARVIEALTREGLATIQEATPHDLSNLAWGLARAGVGGRDKEESEVEDPLASAASEHATSSGGAVGGSGKAIEGSEAGKRETTPAGGMGQKGGKSGVGVDGGGAXXXXXXXXXMRGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEASSE--------FVNKDDASTSAGIALADLAPGGRRPMPRWSRDWGRPCWRGRVTDSTSS-SPSSCRGCAGRSGHGTSRGLCRFR-SPVFSWRDRCRKRGSTPRS------TRGKS*PRFCGRLPR-LWASRTLPPRI-WPA--------SLAPSRRVSSRRGRVSRGREARVSPAGR--GLDAATACDVLWAFARMGHPAHSLCEAMARDLVDKVPELPPSSVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLRSLSPSASANLLWGLVKTEAAFADGFDRECLEVVAADMGPKLLSFSPRVHNTQGAGAFWFRRCQRSQRGINKLARSSMNA*RA*MGQWYRWP*ETHSAQQTGVFGK*KLVSEKTTNSPACLK*ASW**PGARKTKRPWLDSSYTHIPRSRWWRNTSWTCPPRGVLELHALGPFVGHAHLVRVKCYERVMYDAPSVLCFGAATISLFLQSDVAEPPVLQGFVGNVFHRLLVCALHRTFRWRFALALFERTLPQDTYLQRRRGTLSSRVNPRPRGHHTLTGYNARYPTYSRSFSPPVLSQELCRTAWALGRLGLGGFFSGGSVADVGAGGAGESDDDGPALDGG-EMSGLMDKLLGECSKWLELFAPQELETLLWAICRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPAAARDAAFHLGAFRHLLAKYREIDFDGRRARGRYRRGKSMLSRMFRER 4520
A AK +DA TSGTDLATAALSFA A ARLDISTG+L++VIAACA PQLA+ PLRDLANLSWAFAVQR+L P+MM GVGREIVS+RA G M AKDAS+ AWAYGMLGLRP+RVIEALTREGLAT+QEATPHDLSNLAWGLA+AG GG VEDP+ASAASE + G G GK XXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX GE SE + ++ LADL PGG++ + G R TDS P G RG + S VF R + G P+ + + R G + R LWA TL + PA +LA RG G VS AGR GLDAATACDVLW+FA +GHPAHSLCEAMARDL+ V GYTVSLKRQFD+TKDDL SLSPSASANLLWGLVKTEAAFADGFDRECLE VAADMGPKLLSFSPR ELCRTAWALGRLGLGG F GG D GG G+SDDDGPA+DGG E+SGLMDKLLGECSKW+E+F PQELETLLWA+CRLEHRADDLVADMAAEGKRRQEELPSLLKQSGP+AARDAAFHLGAFRHLLAKYR +DFDGRRARGRYRRGKSM+SRMFRER
Sbjct: 386 ASAKKQDAVACTSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQLAAMPLRDLANLSWAFAVQRRLHPEMMAGVGREIVSSRAFGHMAAKDASILAWAYGMLGLRPSRVIEALTREGLATVQEATPHDLSNLAWGLAKAGAGGXXXXXXXVEDPVASAASEDS----------------------------GSGXXAGKXAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEVEQEDCGEGLSEEGXXXXXXXXXXXXXNATSVETLADLVPGGKKEEASMEQRLGEAVL-ARATDSFQHFQPRQLSRLCWALGAWNGRGSVKLPGSDVFVARS-LSEAGQHPKEYTAEELAQARRQRRRGGGVVRVLWAFATLVGKADSPAQELAGLVGALAEGFETEGARGMGGGGXXXXVSAAGREGGLDAATACDVLWSFATLGHPAHSLCEAMARDLLSVVER---------------------------------RLDEFTVEEAASALWALGALGYTVSLKRQFDLTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELCRTAWALGRLGLGGVFFGGPATD---GGGGDSDDDGPAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1081
BLAST of mRNA_P-lacustris_contig97.16024.1 vs. uniprot
Match: D7FYY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY5_ECTSI) HSP 1 Score: 514 bits (1323), Expect = 5.850e-154 Identity = 456/1004 (45.42%), Postives = 498/1004 (49.60%), Query Frame = 3
Query: 1581 KTKDATTFTSGTDLATAALSFACAQARLDISTGKLMKVIAACAIPQLASTPLRDLANLSWAFAVQRQLDPDMMEGVGREIVSTRAAGRMTAKDASVFAWAYGMLGLRPARVIEALTREGLATIQEATPHDLSNLAWGLARAGVGGRDKEESEVEDPLASAASEHATSSGGAVGGSGKAIEGSEAGKRETTPAGGMGQKGGKSGVGVDGGGAXXXXXXXXXMRGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEASSEFVNKDDASTSAGIALADLAPGGRRPMPRWSRDWGRPCWRGRVTDSTSSSPSSCRGCAGRSGHGTSRGLCRFRSPVFSWRDR--CRKRGSTPRSTRGKS*PRFCGRLPRLWASRTLPPRIWP-ASL-----APSRRVSSRRGRVSRGREAR-------------VSPAGR--GLDAATACDVLWAFARMGHPAHSLCEAMARDLVDKVPELPPSSVSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLRSLSPSASANLLWGLVKTEAAFADGFDRECLEVVAADMGPKLLSFSPRVHNTQGAGAFWFRRCQRSQRGINKLARSSMNA*RA*MGQWYRWP*ETHSAQQTGVFGK*KLVSEKTTNSPACLK*ASW**PGARKTKRPWLDSSYTHIPRSRWWRNTSWTCPPRGVLELHALGPFVGHAHLVRVKCYERVMYDAPSVLCFGAATISLFLQSDVAEPPVLQGFVGNVFHRLLVCALHRTFRWRFALALFERTLPQDTYLQRRRGTLSSRVNPRPRGHHTLTGYNARYPTYSRSFSPPVLSQELCRTAWALGRLGLGGFFSGGSVADVGAGGAGESDDDGPALDGG-EMSGLMDKLLGECSKWLELFAPQELETLLWAICRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPAAARDAAFHLGAFRHLLAKYREIDFDGRRARGRYRRGKSMLSRMFRER 4520
K +DA TSGTDLATAALSFA A ARLDISTG+L++VIAACA PQLA+ PLRDLANLSWAFAVQ +L P+MM GVGREIVS+RA+GRM AKDAS+ AWAYGMLGLRPARVIEALTREGLAT+QEATPHDLSNLAWGLA+AG XXXXXXXXX SGEASS+ D ++ LADL SR G GR D S H R L R + +W R + GS + R S G+ P+ + + L +W A+L +P+ ++ G ++ G E VS AGR GLDAATACDVLW+FA MGHPAHSLCEAMARDLV+KVPELPPSSVS LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDL SLSPSASANLLWGLVKTEAAFADGFDRECLE VAADMGPKLLSFSPR ELCRTAWALGRLGLGG GG D GG G+SDDDGPA+DGG E+SGLMDKLLGECSKW+E+F PQELETLLWA+CRLEHRADDLVADMAAEGKRRQEELPSLLKQSGP+AARDAAFHLGAFRHLLAKYR +DFDGRRARGRYRRGKSM+SRMFRER
Sbjct: 504 KKRDAVACTSGTDLATAALSFAYAHARLDISTGELLEVIAACATPQLAAMPLRDLANLSWAFAVQHRLHPEMMAGVGREIVSSRASGRMAAKDASILAWAYGMLGLRPARVIEALTREGLATVQEATPHDLSNLAWGLAKAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXXXXXXXWGLGWVKSRWERGSGPEGDGEEEQEDCGEGLSEEGSGSGEASSD---PADIHATSVETLADLV----------SRREG-----GRGFDGAESFQ-----------HFQPRQLSRLCWALGAWHGRGSVKLLGSDIFAARSLS---EAGQHPKEYTAEELAQVLWAFATLVGKADSPAHELAGLVGALAEGFETEGARGMGXXXXXXXVSAAGREGGLDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ELCRTAWALGRLGLGGVLFGGPATD---GGGGDSDDDGPAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1204
BLAST of mRNA_P-lacustris_contig97.16024.1 vs. uniprot
Match: A0A6H5JLF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLF3_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 4.440e-6 Identity = 52/112 (46.43%), Postives = 66/112 (58.93%), Query Frame = 2
Query: 251 DLISLSSPRRATLLSVLRGGDSSHGSGSGGEE---AALPQRLG-AVEPAAALLDG-----AALKASGGKEEAVVDEVSKPASAVVEARQERKVDAKEKALREALLSADGPTK 559
D ++LSS RR VLRGG S+ GSG E+ A+ PQ+ AVEPA+A G A+ + A V+ + A+A V +QE K DAKE+ALREALLSADGP K
Sbjct: 12 DTVALSSSRRMAFSRVLRGGGGSNSDGSGREKEEKASPPQKQDVAVEPASASQPGRDPAKGAVGEGPETDSATVEPAAAAAAAAV--KQEPKGDAKEQALREALLSADGPAK 121 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig97.16024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig97.16024.1 >prot_P-lacustris_contig97.16024.1 ID=prot_P-lacustris_contig97.16024.1|Name=mRNA_P-lacustris_contig97.16024.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=487bp MKRLVGITLLIVSLSRACSGASTTASNQRLRSRTSTRDCLYWTSSTTAATback to top mRNA from alignment at P-lacustris_contig97:136013..147014- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig97.16024.1 ID=mRNA_P-lacustris_contig97.16024.1|Name=mRNA_P-lacustris_contig97.16024.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=11002bp|location=Sequence derived from alignment at P-lacustris_contig97:136013..147014- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig97:136013..147014- >mRNA_P-lacustris_contig97.16024.1 ID=mRNA_P-lacustris_contig97.16024.1|Name=mRNA_P-lacustris_contig97.16024.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2922bp|location=Sequence derived from alignment at P-lacustris_contig97:136013..147014- (Pleurocladia lacustris SAG_25_93)back to top |