mRNA_P-lacustris_contig97.16021.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig97.16021.1
Unique NamemRNA_P-lacustris_contig97.16021.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig97.16021.1 vs. uniprot
Match: A0A6H5JGI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGI5_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 1.260e-78
Identity = 144/180 (80.00%), Postives = 161/180 (89.44%), Query Frame = 3 
Query:  495 RREENQGRGKQRKISV-RKSGDALKATFNAFMAASTIVSLALAAEAFWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMVSGTWVILQNVPKLLPKGSDMAGMGSLAALLATPEVLEAAAVLALLGGTAVWALNFATGAVGALLPGEGESPQEEDEDEGAF 1031
            R  +N+GRGK+   SV  K+G+ALKA FNAFMAAST+ SLALAAEA WQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+MVSGTWVILQN PKL PKG D+ G GSLAALLATPEVLEAAAV+ALLGGTA+WALNFATGAVGAL+PG+ +S +EE+E++G  
Sbjct:  172 RETKNRGRGKEGGKSVLEKAGNALKAAFNAFMAASTLASLALAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPKLFPKGLDLTGAGSLAALLATPEVLEAAAVIALLGGTAIWALNFATGAVGALMPGQSKSSREEEEEDGVI 351
[Close]
BLAST of mRNA_P-lacustris_contig97.16021.1 vs. uniprot
Match: D7FYX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX7_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 6.860e-40
Identity = 89/111 (80.18%), Postives = 98/111 (88.29%), Query Frame = 3 
Query:  495 RREENQGRGKQR-KISVRKSGDALKATFNAFMAASTIVSLALAAEAFWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMVSGTWVILQNVPK 824
            R  +N+G G++  K  + K+G+ALKA FNAFMAAST+ SL LAAEA WQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLP+MVSGTWVILQN PK
Sbjct:  173 RETKNKGGGEEGGKPVLEKAGNALKAAFNAFMAASTLASLVLAAEAVWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPVMVSGTWVILQNAPK 283
[Close]
BLAST of mRNA_P-lacustris_contig97.16021.1 vs. uniprot
Match: A0A836CM52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM52_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.730e-19
Identity = 60/161 (37.27%), Postives = 96/161 (59.63%), Query Frame = 3 
Query:  537 SVRKSGDALKATFNAFMAASTIVSLALAAEAFWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMVSGTWVILQNVPKLLPKGSDMAGMGSLAALLATPEVLEAAAVLALLGGTAVWALNFATGAVGALLPGEGESPQEEDED 1019
            S R  G+ +++ +N  + A T+ S+ LA +A  +L   P+TL     TL  LLPL   GV GAA+LV ++ R+VRV+VT+P+++ G ++   ++P LL    D+A  G L A+LATPEVLEA A++A++ G  +W +    G V  +    G    + D++
Sbjct:   22 STRSIGEVVRSAWNGLLVALTVASVVLAVDAVVKLKTQPITLD----TLGNLLPLAAFGVAGAARLVAVLLRLVRVLVTVPVVLGGAYLAAPSIPDLLKHSPDLA-TGGLFAVLATPEVLEAIALIAVIVGAGIWIVRQLAGMVTGMASVRGNDGDDSDDE 177
[Close]
BLAST of mRNA_P-lacustris_contig97.16021.1 vs. uniprot
Match: A0A7S2V4B2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4B2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.180e-11
Identity = 45/137 (32.85%), Postives = 75/137 (54.74%), Query Frame = 3 
Query:  531 KISVRKSGDALKATFNAFMAASTIVSLALAAEAFWQLHGAPLTLSNAVPTLTKLLPLTGIGVFGAAQLVGLVARVVRVIVTLPIMVSGTWVILQNVPKLLPKGSDMAGMGSLAALLATPEVLEAAAVLALLGGTAVW 941
            KI+ +   D+ K  F   +    I S+  A  A ++L+  P TLSN   T+T +LP    G FG  +L+G   R+VR+++++PI+V GTW +   +P+ +    D+A   SL  + A PE++EA  ++  +G    W
Sbjct:  120 KITFQSVLDSAKKAFGFLLVGVAIYSVYTAGTAVYKLYTEPFTLSNLGSTVTNVLPALTFGYFGTLKLIGAFMRLVRILLSVPIVVGGTWFLAPRLPEFIQSSPDLAST-SLLGIFAVPEIVEAIILILFVGSFLFW 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig97.16021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JGI5_9PHAE1.260e-7880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYX7_ECTSI6.860e-4080.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM52_9STRA1.730e-1937.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4B2_9STRA2.180e-1132.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig97contigP-lacustris_contig97:100766..104003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002870.1
Exons3
Model size1885
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig97.16021.1prot_P-lacustris_contig97.16021.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig97 100781..102228 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817399.200514-UTR-P-lacustris_contig97:100765..1007801622817399.200514-UTR-P-lacustris_contig97:100765..100780Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 100766..100780 +
1693495037.6812391-UTR-P-lacustris_contig97:100765..1007801693495037.6812391-UTR-P-lacustris_contig97:100765..100780Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 100766..100780 +
1622817399.2344134-UTR-P-lacustris_contig97:102228..1024881622817399.2344134-UTR-P-lacustris_contig97:102228..102488Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 102229..102488 +
1693495037.7161317-UTR-P-lacustris_contig97:102228..1024881693495037.7161317-UTR-P-lacustris_contig97:102228..102488Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 102229..102488 +
1622817399.2460194-UTR-P-lacustris_contig97:102942..1040031622817399.2460194-UTR-P-lacustris_contig97:102942..104003Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 102943..104003 +
1693495037.7269902-UTR-P-lacustris_contig97:102942..1040031693495037.7269902-UTR-P-lacustris_contig97:102942..104003Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 102943..104003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817399.211341-CDS-P-lacustris_contig97:100780..1008391622817399.211341-CDS-P-lacustris_contig97:100780..100839Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 100781..100839 +
1693495037.696403-CDS-P-lacustris_contig97:100780..1008391693495037.696403-CDS-P-lacustris_contig97:100780..100839Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 100781..100839 +
1622817399.2235126-CDS-P-lacustris_contig97:101738..1022281622817399.2235126-CDS-P-lacustris_contig97:101738..102228Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 101739..102228 +
1693495037.7065647-CDS-P-lacustris_contig97:101738..1022281693495037.7065647-CDS-P-lacustris_contig97:101738..102228Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 101739..102228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig97.16021.1

>prot_P-lacustris_contig97.16021.1 ID=prot_P-lacustris_contig97.16021.1|Name=mRNA_P-lacustris_contig97.16021.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=183bp
MARFNHVLALACLLRQFEGNAPNLASSCSSSFGQPSPSTSCDRAAAAARS
PRRFISSAGLVCPAASEASLSSDSGGTCRPRDHWRRRQRHLHGQPEDPMR
PCRRRPLPCSSTSLSAVREGSSSGSSSGVHSRPSPGVVDLGEGDEVVGGL
AAAGRPAPGGGARKIKEGGNKGKSVLGKAGTH*
back to top

mRNA from alignment at P-lacustris_contig97:100766..104003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig97.16021.1 ID=mRNA_P-lacustris_contig97.16021.1|Name=mRNA_P-lacustris_contig97.16021.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3238bp|location=Sequence derived from alignment at P-lacustris_contig97:100766..104003+ (Pleurocladia lacustris SAG_25_93)
GGGTCCATTGAAGACATGGCACGCTTTAACCACGTGCTTGCTTTGGCGTG
CCTGCTTCGTCAGTTCGAGGGTAAGTATAACTACCCCCTAGGGACAGCAG
TTGGCCTCGTCAAGAGCGGCAGTACCCTCCAGCAGCTGTTCCAACGGCAT
ACGACCACGTCTTACTCAGTATAACGATGATATCGATGGGGGGCGGGTAC
TTCAGCTGTAGCTCACAGAGTTCTTCTGCAGAGCCTTTCGACGCACTCGT
TGTGCGGTCAGCGAGATGTTCGGGTGAAAGGGGCCGTGAAAGTGTGATCA
TGAAGTGATCATTACTGACGTGACCAGCTCGAAAGCGCTGACATTTGCCA
GCTCATACAGCTAGCAGCACATACCACGAACTCCCTCTCAAGGTGTATCT
TGCATCCTGATAGAGACCCGATCTGGATACAGTTATACTAGTTGCTTCTT
GGCGAAACAGGAGTCGTTGAACCGATATTGGCGAAACCCATATGCTGGAG
TAGTGCAGTATTTGTAGCAAAAACGATTGTTCCGCATTAACTTGTACCCA
ACTACTGCTGTACCATACGCTACTCTAGAGGACAAGGTACGGCGACAACC
TGCTGTGATACATTGTGATGCCGACAAACTCATTCCACACTCTCCAACCT
CCATTTACATCCTATACCCCTCCCATGACTGAAATCCGATATACTCACGA
TAGCCTTCAATCCATATTGTTGAGCCTGTTACCCGTAGAACCTACAAGTG
TCACTGTTGTCAGGTTTCAGTAAGGACTCAAGTTGATGTAACTTGGTTCG
TCGTCCGACAGGTAGAAAAGATTGTTATTTACATAGTATAGAAGTATTTA
TTTCAAGTAGCATAATTGTTTTCGAGAGTCATGGCAAATATATCTGTGCT
GACCGTCCGAACCCGTTTCTCTACTTTTCTGGGCAGCTTTCAACCGTGTC
CACCTCGTCACCCCCACCGCGAGCGCACCCAACCTCGCCTCGTCCTGTTC
TTCTTCCTTCGGGCAGCCGTCGCCGTCGACGTCTTGTGATCGTGCCGCCG
CCGCCGCCAGATCCCCGAGGCGGTTTATCTCGTCGGCTGGGCTTGTTTGC
CCGGCCGCATCGGAGGCATCTCTTTCCAGTGACTCCGGTGGTACGTGTCG
ACCCAGGGACCACTGGCGGCGACGACAACGGCATCTGCACGGACAGCCCG
AGGACCCAATGCGGCCGTGTCGTCGAAGACCCTTGCCTTGCTCGTCAACC
TCATTGTCCGCGGTACGGGAGGGAAGCAGCAGTGGCAGCAGTAGCGGTGT
ACATTCACGACCATCACCGGGGGTGGTTGATCTAGGAGAGGGGGACGAGG
TTGTGGGCGGGTTAGCGGCAGCTGGGAGGCCGGCGCCCGGCGGCGGCGCG
AGGAAAATCAAGGAAGGGGGAAACAAAGGAAAATCAGTGTTAGGAAAAGC
GGGGACGCATTGAAGGCAACCTTTAACGCCTTCATGGCGGCGAGCACGAT
CGTGTCCCTCGCTCTAGCGGCCGAGGCTTTCTGGCAGCTGCACGGCGCGC
CGCTCACGCTGTCGAACGCCGTCCCGACGCTGACGAAGCTGCTTCCCCTG
ACCGGCATCGGCGTCTTCGGCGCAGCGCAGCTTGTGGGACTAGTCGCTAG
GGTCGTGAGGGTCATCGTGACGCTCCCCATTATGGTCAGCGGCACGTGGG
TTATCCTGCAAAATGTTCCCAAGGTGTGTGTGTCCGTCATTGCTTGTGTG
TGCGCCTTCGTGTTCGCGTGAAGGATTGTAGAGCAGCTGGAGGCGGCGCG
CACACGCTTGTCGATTAAATGTACGCACCTTCTCCCGTAGACACGCATAT
CGCGAATAAAAATCTTGCGGCCACTAGTCATCGCGCCTTGCTGTCATTGC
GCAAATAATTTTCTTTCCCGTATCACGCCATTCCCAAAAGGCCTCCGTAC
GGCAGGAGCACACCACACGTGTTACATATTTTGTCGCTGGCCACCATGTC
CCCTGCCACGCCTGAAGACGCTCAGAATCGATTTATATTTCTTCTCTTCT
ACCTCAAGTTGTCGCCACCGCTCTTCTGAGACAGAACCTCAGCGAAACTC
CGCGCACATGGCATATCACACGTGCATGCTTTTTCGTCGTCTCTGCTTCG
TGTGTCGATTCCCAAAACCTACGTTAGCTGTTGCCGAAGGGGTCGGACAT
GGCGGGAATGGGATCGCTCGCGGCCCTGTTGGCCACCCCGGAGGTGCTGG
AGGCGGCCGCTGTGTTGGCACTCCTGGGGGGCACCGCGGTATGGGCGCTC
AACTTTGCGACGGGGGCGGTGGGGGCTTTATTACCGGGTGAGGGCGAATC
CCCGCAGGAGGAGGACGAGGATGAGGGAGCATTTTAGCATACCATGCTCC
CATGATACGTGCTCTTGTTTTCGCCGTCGTGAACGGAGTGGAGTTTGCTG
TAATTTCCGCGTGATACATTGGGCATAGGTGGAAGCGATACTTGCTCTGT
TGGAGACAACAGAAGACATCAAGGTGTGCGCTAGAATCTACGTGCTATTT
GATCGGTAGACTGAGCTAGGGCTGTCGTGCGGAGTTTTTTGTTTGGATCC
TTCCCTCGGGCTGCCTGCAGCGGACGTGGGACTCGGGGTGTTGACTCATA
CCAAGGGCACCTTTTTCGTGTGTCACGCGGGGCTTTTGTGCTGTGGGGAT
ATAGCGTTGCTCAGAAGCCATTGGAAGGTTTCGGAGGTCTGACACACGTC
AAGGCTGTAGATAGAGCGGTAGACATAATATTGCAGAGGAATGGTTCTTG
TCCATTTTTCGTGGGAAGGTGATAACTTCCCTAAACACGTCGTTGCAGCA
TGTTGTCCTTTGTCGCGACCCTTTGTCTGATTTTGGGGTCACTCTGGCTG
TAGCCGACTTTACTTGACTGAGGTGGCGCTTTGGGAATGTCTTGTCGACT
AGCTGCGAGGTGTGTGTATCTGCTCTTGTTACCAAACAAGTGTGCGTGAT
GCCGCGAAGATCGTCGTGAACGGCTAAACAACCTTCCGTTCGACAGGCGG
TTTACAACCCTTGCGCATTTTGTACAGACTTGGACGCAAGTTATTGTCGT
CATCACGCATCAGTGTGTCCGTGTTTCCCTTCAAATTAAATACGGAACGG
CCCCACGCGTCATTGCCTATAGACAAAGAGTTGTATATGCAGACGACGAT
AGACCTTCACAAAACAAAACACGCGACGAACGAGACAC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig97:100766..104003+

>mRNA_P-lacustris_contig97.16021.1 ID=mRNA_P-lacustris_contig97.16021.1|Name=mRNA_P-lacustris_contig97.16021.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1098bp|location=Sequence derived from alignment at P-lacustris_contig97:100766..104003+ (Pleurocladia lacustris SAG_25_93)
ATGGCACGCTTTAACCACGTGCTTGCTTTGGCGTGCCTGCTTCGTCAGTT
CGAGGGTAAATGGCACGCTTTAACCACGTGCTTGCTTTGGCGTGCCTGCT
TCGTCAGTTCGAGGGTAACGCACCCAACCTCGCCTCGTCCTGTTCTTCTT
CCTTCGGGCAGCCGTCGCCGTCGACGTCTTGTGATCGTGCCGCCGCCGCC
GCCAGATCCCCGAGGCGGTTTATCTCGTCGGCTGGGCTTGTTTGCCCGGC
CGCATCGGAGGCATCTCTTTCCAGTGACTCCGGTGGTACGTGTCGACCCA
GGGACCACTGGCGGCGACGACAACGGCATCTGCACGGACAGCCCGAGGAC
CCAATGCGGCCGTGTCGTCGAAGACCCTTGCCTTGCTCGTCAACCTCATT
GTCCGCGGTACGGGAGGGAAGCAGCAGTGGCAGCAGTAGCGGTGTACATT
CACGACCATCACCGGGGGTGGTTGATCTAGGAGAGGGGGACGAGGTTGTG
GGCGGGTTAGCGGCAGCTGGGAGGCCGGCGCCCGGCGGCGGCGCGAGGAA
AATCAAGGAAGGGGGAAACAAAGGAAAATCAGTGTTAGGAAAAGCGGGGA
CGCATTGACGCACCCAACCTCGCCTCGTCCTGTTCTTCTTCCTTCGGGCA
GCCGTCGCCGTCGACGTCTTGTGATCGTGCCGCCGCCGCCGCCAGATCCC
CGAGGCGGTTTATCTCGTCGGCTGGGCTTGTTTGCCCGGCCGCATCGGAG
GCATCTCTTTCCAGTGACTCCGGTGGTACGTGTCGACCCAGGGACCACTG
GCGGCGACGACAACGGCATCTGCACGGACAGCCCGAGGACCCAATGCGGC
CGTGTCGTCGAAGACCCTTGCCTTGCTCGTCAACCTCATTGTCCGCGGTA
CGGGAGGGAAGCAGCAGTGGCAGCAGTAGCGGTGTACATTCACGACCATC
ACCGGGGGTGGTTGATCTAGGAGAGGGGGACGAGGTTGTGGGCGGGTTAG
CGGCAGCTGGGAGGCCGGCGCCCGGCGGCGGCGCGAGGAAAATCAAGGAA
GGGGGAAACAAAGGAAAATCAGTGTTAGGAAAAGCGGGGACGCATTGA
back to top