mRNA_P-lacustris_contig96.15947.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig96.15947.1
Unique NamemRNA_P-lacustris_contig96.15947.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: D7FN25_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN25_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 3.680e-65
Identity = 102/126 (80.95%), Postives = 106/126 (84.13%), Query Frame = 1 
Query:    1 MGILDGVPLYLAKVGVTAPPPPAAPLLCLFFSSSWCPDCVRFVPSLVEAFKGFRPGQADIVFVSSDRSEALQRRYMEEALHPDWQAVTFDGEHRADLKRREKAAKLKPCAGSEVSALGMSPSDRKG 378
            M ILDGVPL+LAK G   PP   APLLCLFFSS WCPDCVRFVPSLVEAFKGF+PGQADIVF+SSDRSE LQRRYMEE LH DW AVTFDGEHRADLKRR  A     CAGSEV+ALGMSPSDRKG
Sbjct:    1 MSILDGVPLFLAKAGAATPPSLNAPLLCLFFSSQWCPDCVRFVPSLVEAFKGFKPGQADIVFISSDRSEELQRRYMEEVLHADWPAVTFDGEHRADLKRRFGA-----CAGSEVTALGMSPSDRKG 121
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: A0A7S2WVU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU4_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.210e-11
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   85 LFFSSSWCPDCVRFVPSLVEAFK--GFRPGQA-----DIVFVSSDRSEALQRRYMEEALHPDWQAVTFDGEHRADLKRR 300
            ++FS+ WCP C  F P L E ++    RPG       ++VFVSSD+SEA  R+YME  +H DW AV FD   R  LK+R
Sbjct:   94 VYFSAEWCPPCRAFTPKLKEFYEKANARPGAGGRKNMEVVFVSSDKSEAGARQYME-GMHGDWLAVAFDSPLRWSLKKR 171
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: A0A7S2WUV8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUV8_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.500e-11
Identity = 43/104 (41.35%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:   85 LFFSSSWCPDCVRFVPSLVEAFK--GFRPGQA-----DIVFVSSDRSEALQRRYMEEALHPDWQAVTFDGEHRADLKRREKAAKLKPCAGSEVSALGMSPSDRK 375
            ++FS+ WCP C  F P L E ++    RPG       ++VFVSSD+SEA  R+YME  +H DW AV FD   R  LK+R  +      AG E   LG   + +K
Sbjct:   94 VYFSAEWCPPCRAFTPKLKEFYEKANARPGAGGRKNMEVVFVSSDKSEAGARQYME-GMHGDWLAVAFDSPLRWSLKKRYGS-----WAGVEKKVLGGEENGKK 191
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: B7GDA0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GDA0_PHATC)

HSP 1 Score: 64.7 bits (156), Expect = 7.000e-10
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:   70 APLLCLFFSSSWCPDCVRFVPSLVEAFKGFRPGQ-ADIVFVSSDRSEALQRRYMEEALHP-DWQAVTFDG-EHRADLKRREKAAKLKPCAGSEVSA 348
            AP+L LFFS+ WCPDCV F+P L+EAF   +P     +V+VSSD SEA       EA  P ++  V FD  + R+++KR   A   K  A  E++A
Sbjct:   44 APVLALFFSAGWCPDCVAFLP-LIEAFAQSQPENLVRVVYVSSDESEAAM-----EAFKPKNFAFVPFDNTQERSNMKRHYGACARKEMADLEITA 133
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: UPI0018936F8F (probable nucleoredoxin 3 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018936F8F)

HSP 1 Score: 63.5 bits (153), Expect = 6.710e-9
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1 
Query:   70 APLLCLFFSSSWCPDCVRFVPSLVEAFKGFRPGQA---DIVFVSSDRSEALQRRYMEEALHPDWQAVTFDGEHRADLKRR 300
            A  + L+FS+ WCP C  F P L EA+K  +   A   ++VF+SSDRS A   +YMEE+ H  W AV F    + +LK +
Sbjct:  174 AKAVALYFSAHWCPPCRMFTPVLAEAYKEMKEECAAPIEVVFISSDRSNADMLKYMEES-HGAWYAVKFGDAFQQELKTK 252
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: A0A131XGW6_9ACAR (Thioredoxin domain-containing protein n=7 Tax=Ixodidae TaxID=6939 RepID=A0A131XGW6_9ACAR)

HSP 1 Score: 61.2 bits (147), Expect = 7.400e-9
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   70 APLLCLFFSSSWCPDCVRFVPSLVEAFKGFRPGQA---DIVFVSSDRSEALQRRYMEEALHPDWQAVTFDGEHRADLKRR 300
            A  + L+FS+ WCP C  F P L EA+K  +   A   +++FVSSDRS A   +YMEE+ H  W AV +      +LK +
Sbjct:   26 AKAVALYFSAHWCPPCRMFTPVLAEAYKEMKDECAAPIEVIFVSSDRSNADMLKYMEES-HGAWYAVKYGDAFLQELKSK 104
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: UPI00189773A4 (probable nucleoredoxin 3 n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189773A4)

HSP 1 Score: 62.4 bits (150), Expect = 1.720e-8
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   70 APLLCLFFSSSWCPDCVRFVPSLVEAFKGFRPGQA---DIVFVSSDRSEALQRRYMEEALHPDWQAVTFDGEHRADLKRR 300
            A  + L+FS+ WCP C  F P L EA+K  +   A   ++VFVSSDRS A   +YMEE+ H  W A+ F      +LK +
Sbjct:  173 AKAVALYFSAHWCPPCRMFTPVLAEAYKEMKDECAAPVEVVFVSSDRSNADMLKYMEES-HGAWYAIKFGDAFLQELKTK 251
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: A0A076FFK9_9MAXI (Nucleoredoxin (Fragment) n=1 Tax=Paracyclopina nana TaxID=565004 RepID=A0A076FFK9_9MAXI)

HSP 1 Score: 59.3 bits (142), Expect = 3.510e-8
Identity = 29/75 (38.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   76 LLCLFFSSSWCPDCVRFVPSLVEAFKGFRPGQADIVFVSSDRSEALQRRYMEEALHPDWQAVTFDGEHRADLKRR 300
            ++ ++FS+ WCP C  F P L + ++  +    +IVFVSSDRS+A  + YM+E+ H DW AV       ++LK +
Sbjct:   28 VVLIYFSAHWCPPCRAFTPVLKDFYEEVQGEGVEIVFVSSDRSQADMQSYMKES-HGDWLAVEHGSALASELKSK 101
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: A0A553NND8_TIGCA (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NND8_TIGCA)

HSP 1 Score: 61.6 bits (148), Expect = 5.120e-8
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:   73 PLLCLFFSSSWCPDCVRFVPSLVEAFKGFR-----PGQA--DIVFVSSDRSEALQRRYMEEALHPDWQAV 261
            P+  L+FS+ WCP C  F P L  A++ +      PG A  ++VFVSSDRS+A Q  YM EA H DW AV
Sbjct:   27 PVWALYFSAHWCPPCRVFTPMLQRAYQNYLREWSGPGVAPVEVVFVSSDRSQAQQLEYMREA-HGDWPAV 95
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BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Match: A0A7R9BHL0_9CRUS (Hypothetical protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BHL0_9CRUS)

HSP 1 Score: 58.5 bits (140), Expect = 7.710e-8
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   88 FFSSSWCPDCVRFVPSLVEAFKGFRP-GQA-DIVFVSSDRSEALQRRYMEEALHPDWQAVTFDGEHRADLKRREKAAKLKPC 327
            +FS+ WCP C  F P L + +   R  G+  +I+FVSSDRSEA    YM+++ H DW AV F+      LK + + + + PC
Sbjct:   32 YFSAHWCPPCRAFTPVLADFYDALRDAGEGFEIIFVSSDRSEAEMLNYMKDS-HGDWFAVPFNSAEVRALKEKFQVSGI-PC 111
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig96.15947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FN25_ECTSI3.680e-6580.95Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2WVU4_9STRA2.210e-1146.84Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WUV8_9STRA3.500e-1141.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B7GDA0_PHATC7.000e-1043.75Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
UPI0018936F8F6.710e-942.50probable nucleoredoxin 3 n=1 Tax=Rhipicephalus san... [more]
A0A131XGW6_9ACAR7.400e-941.25Thioredoxin domain-containing protein n=7 Tax=Ixod... [more]
UPI00189773A41.720e-842.50probable nucleoredoxin 3 n=1 Tax=Dermacentor silva... [more]
A0A076FFK9_9MAXI3.510e-838.67Nucleoredoxin (Fragment) n=1 Tax=Paracyclopina nan... [more]
A0A553NND8_TIGCA5.120e-848.57Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
A0A7R9BHL0_9CRUS7.710e-840.24Hypothetical protein n=1 Tax=Notodromas monacha Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig96contigP-lacustris_contig96:15090..16823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.2
Seed ortholog evalue5e-51
Seed eggNOG ortholog2880.D7FN25
Preferred nameNXNL1
KEGG koko:K17609
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007600,GO:0007601,GO:0007606,GO:0007608,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0032501,GO:0042221,GO:0044424,GO:0044464,GO:0050877,GO:0050896,GO:0050953,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1990748
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-25_001290.1
EC1.8.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons4
Model size500
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig96.15947.1prot_P-lacustris_contig96.15947.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig96 15164..16823 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817387.7977905-UTR-P-lacustris_contig96:15089..151631622817387.7977905-UTR-P-lacustris_contig96:15089..15163Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig96 15090..15163 -
1693495027.9625068-UTR-P-lacustris_contig96:15089..151631693495027.9625068-UTR-P-lacustris_contig96:15089..15163Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig96 15090..15163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817387.8087418-CDS-P-lacustris_contig96:15163..152671622817387.8087418-CDS-P-lacustris_contig96:15163..15267Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig96 15164..15267 -
1693495027.9790947-CDS-P-lacustris_contig96:15163..152671693495027.9790947-CDS-P-lacustris_contig96:15163..15267Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig96 15164..15267 -
1622817387.8192587-CDS-P-lacustris_contig96:15723..158101622817387.8192587-CDS-P-lacustris_contig96:15723..15810Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig96 15724..15810 -
1693495027.9948823-CDS-P-lacustris_contig96:15723..158101693495027.9948823-CDS-P-lacustris_contig96:15723..15810Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig96 15724..15810 -
1622817387.831605-CDS-P-lacustris_contig96:16216..163391622817387.831605-CDS-P-lacustris_contig96:16216..16339Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig96 16217..16339 -
1693495028.0089805-CDS-P-lacustris_contig96:16216..163391693495028.0089805-CDS-P-lacustris_contig96:16216..16339Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig96 16217..16339 -
1622817387.845268-CDS-P-lacustris_contig96:16711..168231622817387.845268-CDS-P-lacustris_contig96:16711..16823Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig96 16712..16823 -
1693495028.0247912-CDS-P-lacustris_contig96:16711..168231693495028.0247912-CDS-P-lacustris_contig96:16711..16823Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig96 16712..16823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig96.15947.1

>prot_P-lacustris_contig96.15947.1 ID=prot_P-lacustris_contig96.15947.1|Name=mRNA_P-lacustris_contig96.15947.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=142bp
MGILDGVPLYLAKVGVTAPPPPAAPLLCLFFSSSWCPDCVRFVPSLVEAF
KGFRPGQADIVFVSSDRSEALQRRYMEEALHPDWQAVTFDGEHRADLKRR
EKAAKLKPCAGSEVSALGMSPSDRKGASRPLPYSARRMGCY*
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mRNA from alignment at P-lacustris_contig96:15090..16823-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig96.15947.1 ID=mRNA_P-lacustris_contig96.15947.1|Name=mRNA_P-lacustris_contig96.15947.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1734bp|location=Sequence derived from alignment at P-lacustris_contig96:15090..16823- (Pleurocladia lacustris SAG_25_93)
ATGGGCATCTTGGATGGCGTTCCTCTGTACTTGGCCAAGGTGGGCGTTAC
TGCGCCACCGCCACCGGCTGCACCTCTGCTCTGTCTGTTTTTCTCGAGCT
CTTGGTGCCCAGGTGAAGTTGGGAATCCTTCTGCATGAACACTGAGGGAC
CACAGCACAGCACTACAGCAAGCACGCACGTGTAATCGTCATTTCGGCAA
AGTTTACTGCAATAAGCTTGATATCGCACGCAGCATCATAGGTGAGCACT
TGCAGCGTAATCCTGTGAATGTTCAGCGGTAGCACGCTTAGCGAGAATAG
GTTACAGGTTTCCAAGTTCTGCCGGCCCAGCCTTGCCCATCTTCAACTGC
CCGTCTTGTTCTGCAAGATACACATTGCCACTGCTCCTTCTGGCGTCCCT
CGAACTGATCTGTGATGTCCCTATAGAGCAGTACCCTCCTCCCCCTGCGG
CTTTACGTCGAATCCCCAAACGCCCCTGTGGCAGACTGCGTGAGATTCGT
GCCGTCGCTAGTGGAGGCGTTCAAGGGGTTCAGACCAGGCCAGGCCGATA
TTGTTTTTGTAAGCTCGGACAGAAGTGAGGCGCTGCAGCGCCGTTACATG
GAGGAAGGTAAGTTGCGTAATGTGAGGGGTCGTGGGGGTAATTTTGTATA
CCTGGGAGATATGTAGACTACTGGTATGGTTTACGCTGAACGTTATACTC
ACAACGCAGTAAAGACACCAAACGGTACATATTATGGCGTTCATTCATGG
ACGAACGTATGTTCATACGTAGTAAAAAGACACAATTTACGGTACACATG
GCAAGCTTTTGGGGGGTAGTCTCGCAGTTTGGTGCGGTTGTTGGGTCCCC
AGAATCATCACTTGAAAGCATGCCGCCTAGTGTAGCGCTCTAAAGATAAG
TATCCATCGCACCCAACCCCACCTGCTTGACAGTATCCCATTTTGACCAC
CACGACCATACCCTTGGTTGTTCTGTTTTTCCTTGTGTACGACGGGTATG
GCAACTTTGGAAGCGCTCCACCCCGATTGGCAAGCCGTGACGTTCGACGG
GGAGCACCGGGCGGATCTTAAAAGGCGAGAGAAAGCGGCAAAACTCAAAC
GTTTGCTATATTCTAGGTAGCGACGGTTTTTGTGGAAGGACAACGTCATG
TTTCGTAGCGGCGATACCTTGTTGCCTCATTGTGTTTCCGCCTAAAACAC
GAACGGGGCAACTAGGAAGAGCGGCCCTTTGTACAATCGAGGTGAAGATA
ACATAATCTCCTCTCCCAAGCTCTGCTGGGCCAAGAATCAGCATCAGAAA
AACTGAAAGGAAGTACCCACATCTGCTGCATACAAGTATATACGACACGT
TTTGTTGTGTGTTGTCGATGGCTTTTCATTCAGAACTCCTGCATGGCAGC
ACGAGCATCGATAGGCCTCCGTTCCTCCCGCCCCGCGACTCCACACGCAC
CCCGCGCAACAGCATACCTTCCAAACCTGCCTCTTCCACCACCCAGTATG
CTTTGTCCTTTCCGATGCGAAACGTCTATGATGATGACATGGCAGGCGTT
TCGGAGCGTGCGCTGGATCTGAAGTGTCGGCTTTGGGCATGTCTCCCTCC
GATCGGAAGGGGGCATCCCGACCCTTGCCGTATTCCGCGCGTCGGATGGG
GTGCTACTGACCATGGATGGCGTCGGCGACGTGAACCAAGCTGGGGCTGA
CGCAGTCAATCGCTGGGAAGACGCAGCAAAGAAA
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Coding sequence (CDS) from alignment at P-lacustris_contig96:15090..16823-

>mRNA_P-lacustris_contig96.15947.1 ID=mRNA_P-lacustris_contig96.15947.1|Name=mRNA_P-lacustris_contig96.15947.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=852bp|location=Sequence derived from alignment at P-lacustris_contig96:15090..16823- (Pleurocladia lacustris SAG_25_93)
ATGGGCATCTTGGATGGCGTTCCTCTGTACTTGGCCAAGGTGGGCGTTAC
TGCGCCACCGCCACCGGCTGCACCTCTGCTCTGTCTGTTTTTCTCGAGCT
CTTGGTGCCCAGATGGGCATCTTGGATGGCGTTCCTCTGTACTTGGCCAA
GGTGGGCGTTACTGCGCCACCGCCACCGGCTGCACCTCTGCTCTGTCTGT
TTTTCTCGAGCTCTTGGTGCCCAGACTGCGTGAGATTCGTGCCGTCGCTA
GTGGAGGCGTTCAAGGGGTTCAGACCAGGCCAGGCCGATATTGTTTTTGT
AAGCTCGGACAGAAGTGAGGCGCTGCAGCGCCGTTACATGGAGGAAGACT
GCGTGAGATTCGTGCCGTCGCTAGTGGAGGCGTTCAAGGGGTTCAGACCA
GGCCAGGCCGATATTGTTTTTGTAAGCTCGGACAGAAGTGAGGCGCTGCA
GCGCCGTTACATGGAGGAAGCGCTCCACCCCGATTGGCAAGCCGTGACGT
TCGACGGGGAGCACCGGGCGGATCTTAAAAGGCGAGAGAAAGCGGCAAAA
CTCAAACCGCTCCACCCCGATTGGCAAGCCGTGACGTTCGACGGGGAGCA
CCGGGCGGATCTTAAAAGGCGAGAGAAAGCGGCAAAACTCAAACCGTGCG
CTGGATCTGAAGTGTCGGCTTTGGGCATGTCTCCCTCCGATCGGAAGGGG
GCATCCCGACCCTTGCCGTATTCCGCGCGTCGGATGGGGTGCTACTGACG
TGCGCTGGATCTGAAGTGTCGGCTTTGGGCATGTCTCCCTCCGATCGGAA
GGGGGCATCCCGACCCTTGCCGTATTCCGCGCGTCGGATGGGGTGCTACT
GA
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