mRNA_P-lacustris_contig940.15814.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig940.15814.1 vs. uniprot
Match: A0A6H5L8M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M0_9PHAE) HSP 1 Score: 274 bits (701), Expect = 1.850e-82 Identity = 169/317 (53.31%), Postives = 189/317 (59.62%), Query Frame = 1
Query: 58 VAGAGGLGAALIAPSSGRLRMGVGGLDMGRAPGHPVG-LRLPTMRGAGAP-VSPAIVSAPSITRGRGAGMGDGGADMRGAPGSPGYLSLAMTSG-------------------------------------------------MPPVSPAFVSPHSIALGSSATQPHPAPLLPVDTIAAPQTTASNGGFGGKRAAAEILSHGDLNLSPENDSEKQPRTDGPGTSASFLTGGRRKGQLTQQASRCHGCRNTKPTGQARHACQGGDLEGDEMRGCNYWLCHRCMGKWMEVSGEQGGFWCCLHSGKEWCPCANRKAKTES 855
AGAGGLGA L PSSG + MG GGLDMGRAP P G L +M GAG P +SPA VSAPSI GAGM D G D+ A G P L LA T G MPP+SPA VS SIA G QP PA +P + PQTT S+GG GGKRAAAE L+H DL + ++DS+ Q RTDGPGTSAS TGGRRKGQL QQAS CHGCR KPTG RHACQGGD EG E RGCNYW+C +CMG+WM+ SG+ GFWCCLHSG+EWCPCA R + S
Sbjct: 16 TAGAGGLGATLFDPSSGGVHMGAGGLDMGRAPAGPPGSLPRASMCGAGMPPMSPANVSAPSIAPHPGAGMSDSGLDIGLAQGPPVSLRLATTCGAEMPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMPPLSPANVSAPSIAPGPRRAQPRPALAMP-QLLPVPQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGD-EGGEARGCNYWVCQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERVSTKRS 330
BLAST of mRNA_P-lacustris_contig940.15814.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 257 bits (656), Expect = 8.710e-75 Identity = 144/242 (59.50%), Postives = 163/242 (67.36%), Query Frame = 1
Query: 118 MGVGGLDMGRAPGHPVGLRLPTMRGAGAPVSPAIVSAPSITRGRGAGMGDGGADMRGAPGSPGYLSLAMT--SGMPPVSPAFVSPHSIALGSSATQPHPAPLLPVDTIAAPQTTASNGGFGGKRAAAEILSHGDLNLSPENDSEKQPRTDGPGTSASFLTGGRRKGQLTQQASRCHGCRNTKPTGQARHACQGGDLEGDEMRGCNYWLCHRCMGKWMEVSGEQGGFWCCLHSGKEWCPCANR 837
MG G+D+G A G PV LRL T GA P+SPA VSA SI G MG GGADMRGAPGS G A +GMPP+ G QP PA +P + PQTT S+GG GGKRAAAE L+H DL + ++DS+ Q RTDGPGTSAS TGGRRKGQL QQAS CHGCR KPTG RHACQGGD EG E RGCNYW+ +CMG+WM+ SG+ GFWCCLHSG+EWCPCA R
Sbjct: 1 MGDSGIDIGHAQGPPVSLRLATTCGAEMPISPANVSASSIASHPGPLMGVGGADMRGAPGSSGGFPRATMCGAGMPPLXXXXXXXXXXXPGPRRAQPRPALAMP-QLLPVPQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDGPGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGD-EGGEARGCNYWVRQKCMGRWMQASGQPRGFWCCLHSGREWCPCAER 240
BLAST of mRNA_P-lacustris_contig940.15814.1 vs. uniprot
Match: A0A6H5KLI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI9_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.710e-39 Identity = 74/120 (61.67%), Postives = 87/120 (72.50%), Query Frame = 3
Query: 972 AAAGDTASALPSRCAHIEVVFVAERTPTQVPKADILLLPNQFVSALEKVPAGTFNGRTKASMRARADQAAKEGLPLLVGVGKTKCFAVRDGQKFNRTVIGEWAHVKYD-KRGSKMFQCKV 1328
AA G T S LP+RC +EVV ER+ T +PKAD L +F AL VP GTFN T +M RADQAAKEG+P+LVG+G T+CF ++DG + NRTVIGEWAHVKYD K GSKMFQCKV
Sbjct: 10 AATGVTGSPLPARCPPVEVVLEVERSSTPMPKADPLFSAGEFREALTTVPPGTFNESTTRAMHTRADQAAKEGVPVLVGLGSTRCFGIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 129
BLAST of mRNA_P-lacustris_contig940.15814.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 148 bits (373), Expect = 5.420e-38 Identity = 73/90 (81.11%), Postives = 77/90 (85.56%), Query Frame = 3
Query: 1059 VPKADILLLPNQFVSALEKVPAGTFNGRTKASMRARADQAAKEGLPLLVGVGKTKCFAVRDGQKFNRTVIGEWAHVKYDKRGSKMFQCKV 1328
+PKAD LL F SAL+KVPAGTFN RT ASMRARADQAAKEGLPLLV VG TK FAVRDGQKFNRTVIGEW HVKYD+RGSK+FQCK
Sbjct: 3 MPKADALLSAGDFKSALDKVPAGTFNPRTVASMRARADQAAKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKA 92
BLAST of mRNA_P-lacustris_contig940.15814.1 vs. uniprot
Match: A0A6H5JH13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH13_9PHAE) HSP 1 Score: 149 bits (375), Expect = 3.760e-35 Identity = 75/122 (61.48%), Postives = 90/122 (73.77%), Query Frame = 3
Query: 966 NSAAAGDTASALPSRCAHIEVVFVAERTPTQVPKADILLLPNQFVSALEKVPAGTFNGRTKASMRARADQAAKEGLPLLVGVGKTKCFAVRDGQKFNRTVIGEWAHVKYD-KRGSKMFQCKV 1328
++AAAG T S LP+RC H EVV AER+ T +PKAD L +F AL VP GTFN T +M RADQAA+ G+P+LVG+G T+CF ++DG + NRTVIGEWAHVKYD K GSKMFQCKV
Sbjct: 661 SAAAAGVTGSPLPARCPHAEVVLEAERSSTPMPKADPLFSAGEFREALTTVPPGTFNKSTTRAMHTRADQAAQAGVPVLVGLGSTRCFEIKDGHENNRTVIGEWAHVKYDDKGGSKMFQCKV 782
BLAST of mRNA_P-lacustris_contig940.15814.1 vs. uniprot
Match: D7FN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN79_ECTSI) HSP 1 Score: 130 bits (328), Expect = 1.560e-29 Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 3
Query: 966 NSAAAGDTASALPSRCAHIEVVFVAERTPTQVPKADILLLPNQFVSALEK-VPAGTFNGRTKASMRARADQAAKEGLPLLVGVGKTKCFAVRDGQKFNRTVIGEWAHVKYDKR-GSKMFQCKVGE 1334
++AA G T SALP+ C H EVV AER+ +P AD L +F AL VPAG F+ T +M ARADQAA++G+P+LVG+G TK F + DG + NR V+G WAHVKYD R GSK+FQCKVGE
Sbjct: 385 SAAATGGTDSALPAPCCHAEVVLQAERSSMPMPTADPLFSAEEFRHALTTAVPAGAFSEGTTRAMHARADQAAEDGVPVLVGLGSTKYFGITDGLQNNRKVVGGWAHVKYDDRDGSKIFQCKVGE 509
BLAST of mRNA_P-lacustris_contig940.15814.1 vs. uniprot
Match: A0A6H5KVV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV8_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.710e-22 Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 3
Query: 972 AAAGDTASALPSRCAHIEVVFVAERTPTQVPKADILL-LPNQFVSALEKVPAGTFNGRTKASMRARADQAAKEGLPLLVGVGKTKCFAVRDGQKFNRTVIGEWAHVKYDKRGSKM-FQCKVGE 1334
AA GDT L CAH +VV A+ + + A LL +F+ AL+ VP GTFN T ++RAR +A + G+P+LV +G TK FAVRDG FNR ++G WAHVK ++ G K +CKVG+
Sbjct: 124 AAGGDTECVLRRHCAHADVVVQAKASSVPMAGATALLPSAEEFLRALDAVPTGTFNKHTMQAIRARVARAEELGIPVLVKLGDTKFFAVRDGPNFNRNIVGGWAHVKCEESGGKTTLRCKVGQ 246
BLAST of mRNA_P-lacustris_contig940.15814.1 vs. uniprot
Match: A0A6H5KAW8_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW8_9PHAE) HSP 1 Score: 100 bits (250), Expect = 3.800e-19 Identity = 52/105 (49.52%), Postives = 68/105 (64.76%), Query Frame = 3
Query: 975 AAGDTASALPSRCAHIEVVFVAERTPTQVPKADILLLPNQFVSALEKVPAGTFNGRTKASMRARADQAAKEGLPLLVGVGKTKCFAVRDGQKFNRTVIGEWAHVK 1289
A G T LP+RC H EVV AE + T +PKAD + +F AL VP GTFN T +M RADQAA+EG+P+LVG+G T+ F ++DG + +RTVIG +K
Sbjct: 165 ATGVTDPPLPARCPHAEVVLEAEGSSTPMPKADPVFSAEEFRQALTTVPPGTFNESTTRAMHTRADQAAQEGVPVLVGLGSTRYFGIKDGHENDRTVIGGLYTIK 269 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig940.15814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig940.15814.1 >prot_P-lacustris_contig940.15814.1 ID=prot_P-lacustris_contig940.15814.1|Name=mRNA_P-lacustris_contig940.15814.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=302bp MGVGGLDMGRAPGHPVGLRLPTMRGAGAPVSPAIVSAPSITRGRGAGMGDback to top mRNA from alignment at P-lacustris_contig940:2386..3737+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig940.15814.1 ID=mRNA_P-lacustris_contig940.15814.1|Name=mRNA_P-lacustris_contig940.15814.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1352bp|location=Sequence derived from alignment at P-lacustris_contig940:2386..3737+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig940:2386..3737+ >mRNA_P-lacustris_contig940.15814.1 ID=mRNA_P-lacustris_contig940.15814.1|Name=mRNA_P-lacustris_contig940.15814.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1812bp|location=Sequence derived from alignment at P-lacustris_contig940:2386..3737+ (Pleurocladia lacustris SAG_25_93)back to top |