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Homology
BLAST of mRNA_P-lacustris_contig93.15726.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE) HSP 1 Score: 201 bits (510), Expect = 1.340e-57 Identity = 107/129 (82.95%), Postives = 111/129 (86.05%), Query Frame = 1
Query: 1 GLGEGFVEACLSVLGWSPQGVIEAILEDRLPPQVASLHRGLRRAWKSKKGDLDKAYRVDKDLAAAEAKRLIAMENRQEDDAYLLDREYDDXXXXXXXX----REVDVGGGG-RGDDLETVRRVNQLIRQ 372
GLGEGFVEACLSVLGWSPQGVIEA+LEDRLPPQVA+L+RGLRRAWK KKGDLDKAYRVDKDLAAAEAKRLIAME RQEDDAYLL REYDD REVDVGGGG RG D ETVRRVNQL+RQ
Sbjct: 362 GLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLRRAWKGKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDYDDQAWREYDDREVDVGGGGGRGSDFETVRRVNQLVRQ 490
BLAST of mRNA_P-lacustris_contig93.15726.1 vs. uniprot
Match: A0A7S2AVJ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AVJ1_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 3.510e-8 Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 1
Query: 1 GLGEGFVEACLSVLGWSPQGVIEAILEDRLPPQVASLHRGLRRAWKSKKG--DLDKAYRV-----DKDLAAAEAKRLIA-MENRQEDDAYLLDREYDDXXXXXXXXREVDVGGGGRGDDLETVRRVNQLIRQE 375
GLG GFVEA L +S V+ A+L+D LPPQ+ + R L R S+K D+D Y V D D+ + ++LI M+ +ED+A++L REYDD V + + E RR+N +IR +
Sbjct: 1 GLGAGFVEAMLVFHDFSVARVVAAVLDDNLPPQLEGMDRKLGRYRVSRKDLKDIDAGYSVGSQARDDDVLREKQRQLIRNMDRDEEDNAWVLSREYDDDFDDQFD--NVVSFEVCKETEQENTRRMNSIIRDK 131
BLAST of mRNA_P-lacustris_contig93.15726.1 vs. uniprot
Match: A0A4D9DC10_9STRA (CUE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC10_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 9.330e-8 Identity = 46/130 (35.38%), Postives = 67/130 (51.54%), Query Frame = 1
Query: 1 GLGEGFVEACLSVLGWSPQGVIEAILE-DRLPPQVASLHRGLRRAWKS----KKGDLDKAYRVDKDLAAAEAKRLIAMENRQEDDAYLLDREYDDXXXXXXXXREVDVGGGGRGDDLETVRRVNQLIRQE 375
GLGEGFV ACL+V+G++ V+ A+LE LP + +L R L + KKG + D++ A + L ME E+DAYLL +EYDD + +D E +R+ N L+R+E
Sbjct: 433 GLGEGFVHACLAVMGYNINMVVNALLEGSALPYPLDTLDRSLPSPLGADKLRKKGREEAEEARDEEFIARQKAYLRQMEKDAEEDAYLL-QEYDDDFDDQYAGEQTMFSRDTTREDFEAIRKYNNLMRKE 561
BLAST of mRNA_P-lacustris_contig93.15726.1 vs. uniprot
Match: A0A7S2BCH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCH7_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 4.630e-7 Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 4 LGEGFVEACLSVLGWSPQGVIEAILEDRLPPQVASLHRGLRR----AWKSKKGD--LDKAYRVDKDLAAAEAKRLIAMENRQ-EDDAYLLDREYDDXXXXXXXXREVDVGGGGRGDDLETVRRVNQLIRQE 375
LGEGFVE CL+ +S + V+ ILED LPPQ+A + R +R K ++G+ + + D D A A+ L ME + E +A+L+ D XXXXXXXX ++G R DLE ++ N IR++
Sbjct: 1 LGEGFVEVCLAFHDFSVETVVNKILEDDLPPQLADMDRTTKRFRVNMGKVERGNFTVGTTVKADDDFAQAQKAYLRQMEEEEHEKEAFLMAEYNDXXXXXXXXXNNFEIGHSDR--DLEATKKSNAAIREK 129
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | UBA-like |
| Ec32 ortholog | Ec-23_002680.1 |
| Exons | 5 |
| Model size | 616 |
| Cds size | 612 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622817359.4397478-CDS-P-lacustris_contig93:226254..226444 | 1622817359.4397478-CDS-P-lacustris_contig93:226254..226444 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 226255..226444 - |
| 1693495004.5387595-CDS-P-lacustris_contig93:226254..226444 | 1693495004.5387595-CDS-P-lacustris_contig93:226254..226444 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 226255..226444 - |
| 1622817359.4541507-CDS-P-lacustris_contig93:226891..227028 | 1622817359.4541507-CDS-P-lacustris_contig93:226891..227028 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 226892..227028 - |
| 1693495004.548433-CDS-P-lacustris_contig93:226891..227028 | 1693495004.548433-CDS-P-lacustris_contig93:226891..227028 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 226892..227028 - |
| 1622817359.4673452-CDS-P-lacustris_contig93:228047..228194 | 1622817359.4673452-CDS-P-lacustris_contig93:228047..228194 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 228048..228194 - |
| 1693495004.5573575-CDS-P-lacustris_contig93:228047..228194 | 1693495004.5573575-CDS-P-lacustris_contig93:228047..228194 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 228048..228194 - |
| 1622817359.480963-CDS-P-lacustris_contig93:228830..228911 | 1622817359.480963-CDS-P-lacustris_contig93:228830..228911 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 228831..228911 - |
| 1693495004.5687613-CDS-P-lacustris_contig93:228830..228911 | 1693495004.5687613-CDS-P-lacustris_contig93:228830..228911 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 228831..228911 - |
| 1622817359.4918008-CDS-P-lacustris_contig93:231317..231374 | 1622817359.4918008-CDS-P-lacustris_contig93:231317..231374 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 231318..231374 - |
| 1693495004.5789318-CDS-P-lacustris_contig93:231317..231374 | 1693495004.5789318-CDS-P-lacustris_contig93:231317..231374 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig93 231318..231374 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig93.15726.1 >prot_P-lacustris_contig93.15726.1 ID=prot_P-lacustris_contig93.15726.1|Name=mRNA_P-lacustris_contig93.15726.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=204bp
GLGEGFVEACLSVLGWSPQGVIEAILEDRLPPQVASLHRGLRRAWKSKKG DLDKAYRVDKDLAAAEAKRLIAMENRQEDDAYLLDREYDDDYDDQYDDRE VDVGGGGRGDDLETVRRVNQLIRQEEEEDAWWESNKNNNLSVPAPKGGGW RARRDDEHAGEGESSEEYSGGRGRGRGGREGGRSGPSPRGRGRGGDNSSG GGNS back to topmRNA from alignment at P-lacustris_contig93:226253..231374- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig93.15726.1 ID=mRNA_P-lacustris_contig93.15726.1|Name=mRNA_P-lacustris_contig93.15726.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5122bp|location=Sequence derived from alignment at P-lacustris_contig93:226253..231374- (Pleurocladia lacustris SAG_25_93) GGTCTGGGGGAAGGGTTCGTGGAGGCTTGCCTGTCGGTGCTCGGCTGGTC
GCCACAGGTGAGAGGGACTGGGAAGCGTGGGATATTTGTTTCGGGTCTGA
CAAGGCCGGCGCGTTGTTGGTGATGGTATTGGCACGGACGCCTCAAGTTC
TGGTGTTGGCTGGCTGCTTTTTGTGTTTGATCTCGTTTCGTGTCCCGGCG
CGAGTGACCTCGATTCGTCGCGAGCTCGTTTGGTCTGTCGCCTTATTGTG
TGGGACTTGCCGTCTTTCTTGAGGCCTTTCTTGTTGTCGAGATTACGATT
GCTTGCGCAGTTGTCGCTAGCCGTATCGGCTTTGTCGCAGTCGTTTTTTA
CCAGTTACCGGTCGGATCGGCGATTTTCTTCGCTGCCAGTTGGTTAAAGA
CAGCAGGTTAACAAGGTACCACCTGCTACCGATTCAACCATTGGGAATTT
ACACTTAAAATGTCATGGTAAATCTCATTACAATTTACGGAGCACATATG
CTGTATGTCCTCCCAATACCCTCCAACAACTTATGGCTGATTGTGCGTTC
AAGTAAAACCTTTATTCACTTTATGATACAGTAGTGGCCACGGTTTAAGA
GCGGGTCGGGACAAGCCGAAAAAAGCGCTCTTGAATCGGCACCGTTTTTA
AATCGATTTAAGAGCGCATGCTCTTAAATCGTGACTGGAAATAAGAGCAA
GAGCTCTTATACCGAGCCAAATTAAATTAGGCTGTTCAAGGGATGCCCTT
CCCCAAAATGCCGTGTAAGCTCATGGATGACACGTAAATCATTGTGAGAA
TGTAGCTGCTGCCTCTCAGGCCTCTGTGGGCTCGATTGACACACCGAAAT
AGAACATAATGAAACGGAACAACACTAGACAAAAACAGATGATGCGCGAA
AAATCAACCAAACGAAAGAGAAAGAACAAATCACCGCTTCAGCACTCTCT
CCTGCCTCTGTGCACGTTACACGGAGTCTCTCATGCATGTCTGCTTTGTT
TCCCTCGACCAGAAAGCGTTCATCCAAGCTAGCTTGGCCTTACGAAGATG
GTAAGACACGTCGTGCATGGCGCATCTCTCGGCAGTACTCTAGAGTCGAG
TGGGTCCAGGAAACTTTTTTCCGACACCGCACTACCACCCCCTACCCCCG
GAGGCCGAAAAACAAATTCTTGAGCTTTTTTTTTTTTTTTCAAAGAGAGA
CCATTGCAGAGGCAAGCGTTAGGTTGCCTCACGGGTTGGGCTCAACGAAA
CAATATCATCCTGTTAAATATTGGCCTTGAACTGTTGCGCCTACTAGATG
GAGTGCTTTGTGCATCATCCTGAGGTCGGAAAGTCAAGGGAAACGTGCAT
TTTATCAAACGACATATCAACCCAATACCACCCAATATCCAACGAAAGGA
TCGACGCCGACTCAACTTGGCCGACTCAGTTAGTTGTTGTTGTTGTCAAT
AGTTCATCCTCTGCTCCGTCTATGTATGTACGCAAAGATGTACCACACCA
TATTGAATGCTTGCAAAGTCATGCCATACGATCGGAGGTTGGTTGTGTAT
CAGACCCTTGTTGCACTGTCCTCCCATCCGTGCTGTTGTAGGCGTACGTA
GCCCGAGCTAGGCAGCTGGGGAGGGTCTCTACTGCATAGGAATTAGAGGA
TACACTGCCCCTTATATAGGAATTTAGAGTGGAACCCCGCTTTATATAGG
AATTAGAGTGGAACCGTGGTTTGTATAGGAATTTGTATGGCGTTTTGGGG
GAATCTTCTCGTACCTTCCCCCCGAGAGGCCGAAGTTGAAAAATTGGAGT
GTGGTGTCGGAAAAAGTTTTCTGGACCCACTTGCTCGAGTTCACAAAAAT
GTTCAGCTACCCCCGCGTACGGTGGCGGACGCGGGGACTGGCCCGTATCG
CCTTGTTCAGACTCGTTGCCCTCATCGATACCCAAATGCACGCTCTCGTC
AAAGATATCTTCTGCCATGTCTGCTACGATAGCTTCGGCTACTTCCTCGT
CCTCCTCGACAGTCATCCACTTGTCTAGCGCGGCCATGGATCGCACATTT
GGCGTTGCGCCCGGGCAAAGCCCTGAACTAGCGTATTGCGGGCCTGGCGT
ATTGTCCGGGACGCACAAGCAGAGGCTGCCCGCTGCACAGGGCATGGTGT
CCCCAGCTCCGTGCGTGTGTTCGAGTGGGGCTCTTCTTGATGGGGTTCGA
TTCAAGAGCATTCCACAGGAATATGACAAAATTGCTCTTAAATCGATTTG
GCCGGGACAGAGCCCACGAGGCGCTCTTAAATCGGCAATGTTCTTAAATC
AAGCGCTCTTAAACCGTGGCCACTACTGTATAGGCTATGTGGGATAGCGG
TTCGTTGTAAGAACTGGGGCGCTTTTCTGGCAAAAGACACATGTCGTACG
ACAGGAGCTTTGTGGCAAAGTTATGCTTGTGCTCGCTGCATACACCCAAT
ATATCTCCCCCAGGGCGTGATCGAGGCTATCCTGGAAGACCGCTTGCCAC
CTCAAGTCGCCAGTCTTCACCGCGGGTTGCGCCGGGCATGGAAGGTGACC
AAACGAAACCCTTCCGGTACCACCGGCGTCAGTTTTTTCACCAACCCTTT
CAAGTTCCCCTTTTCTTGTTCTCTTTTGCTCGTCGAGTTGATGCCGTCGC
CGATAGCTGGTGTCACACCAGGGGTGGTGGGTGGGTGCCCACAGCAGTCG
TTTCCCAGGAGTGGAGCATCATCCCCGCTCCCCGTGGTGAGCCTGGCTGT
TAAGGGGGGGGCGGCGGTGCCCAAAGCCTTTCGAGGCGCATGCTTTACTA
GTATTTTTGTGCTGTATTTTTCGTTCGTCCCCCTCCCCGTGTTGACCTTG
GAGGGATTTCCCTCTCCGGTCGGGATTCATTCGCGCGCGGCCTGGTGGTG
GCCGCAACGTTCATGCGTGTTGTGTTAGCTCGCTTGCCGTTGCTCCATAA
AGGCAACACAACGAGTACTCGATTTGTTTTTTTCTGGACCGCATATGGTA
CTACGCGATGCCAGTTTATAGTAGGGAGAGGAGGCGAATAGTTTGCCATT
CCAACATGATGACCGTGTGGGTCGCGGTTCACCGCTTCCTCAAGACTTTA
CTGCTTTATTATTTTTTATTTTCTTACTGTCGATCCGTCCATCCTTGCTC
TCCTGCTCATTTTCTCCGTTTTTTTGTTAGAGCAAGAAGGGAGACCTCGA
CAAGGCCTACCGTGTAGACAAAGACTTGGCGGCCGCGGAGGCGAAGCGGC
TTATCGCGATGGAGAATCGGCAAGAGGACGACGCCTACCTCCTAGACAGG
GAATACGACGACGACTACGACGACCAGGTACGTCTTCGGTGTTGTTGTTG
TCCTAACCGTTGCTGCTTAGTTGCTTGCATCTCGCGTCGCGTGCACCGGT
GAGCCGGCGACTCCGACTGACCAAGGAGTATTTTCGGTACGGTTGTCGTC
GCTGCCGAAGCTTTTGTCATTGCTGCTTGGTTCTCACGCTTGGGGGCTCC
GGTGAGGCGATGGGAGGGCTCCGATGACCAGGCGTGTTTTTGTTTTTGAT
GTCGACGCCGCCGCCGCTGCTGCTGCTGCTGCTCTTTCTGACATTTTTCG
CTCCTGTCGGCGTCTCGTTTGGTGTTTCGGTGTTGTTTTGTCACAGCAGC
AAAAGGCAGAGATGCATCCGTATTTTTTCGCGAAAATTGCTTCGTTCGCG
CGCGTACCGTCGTCGTCCTCGTTGTTATTGTTGCTCGGCGACCTGGTTCT
GTCTCGAGGCCTGGTCCCCGCTCATTTGTCGGCACCGTTGTGGGTTGGGC
GTTTTCGAGTGGTCCTTGACGCGGGGTTCGGGGTTCGGCATCATCGGCGG
TTTAGCACTCGACTTGGTTGCTTGTTGCCCCTTGAAGTGTTGTTCCTGTT
GTCATCCTAAACACTTCAATGACGGTTTGGGCGGCTCCCTCGATGCCCAA
AACGTTTCTCTTGGCTACCGCTGCTGCTCGGCGTTTGGACGAGTCGGATG
TGGCGTCGCTTGCTGTTCATGTCGTGGGCACGCCGTGAGTCGCGACAGAG
CGCCATTGATTATACGTGAATCTTATCGTTTCTGCGGGGGAGAAGCCACC
CTGTCTCAGGAACAAACGATGGTCCGCCTACCCATGTTGTCGTCGTCGTC
GTTGTTCTGGTGGTGGTTCTGTTTATCCTAACCTGAATGAAGTAGGCAGC
GGGAGGGAACCCCTGCCCTCCAAGTTTTTCCGCTTGCTCTGCAACTCCAA
TCTCCCTCCAGGCGCCCTACAACCTACTCCTCCTAGACGCTTTATCTGCA
ACTCCATCTCTTGCTTATTGTTTCCCTACCTTGACACCGGCAACAGTATG
ACGACCGCGAGGTTGATGTCGGAGGCGGGGGGCGTGGGGACGACTTAGAG
ACGGTGCGACGGGTTAATCAGCTCATTCGTCAGGAGGAAGAGGAGGACGC
TTGGTGGGAGAGTAACAAGAACAACAACCTCAGGTGAGAGTCTCTCGTAC
AAGTCGTTCCTACGTGTGTATCGCCATCTCGGTACTCTCGTGTCCGCCGA
GCGTGGTATGAGGAGTGGTGGCGTTCTGGGTGCCACCACGCTTTTGGTTT
GTTTTTTGGCTATGTGCTCAGGCCGACCTTGTGCCGGGGTGAATTGTCTG
CTTGTTTGTTTACAAGAGCTCTGAATCCGGAGGCTGGATGCTCCTTTCGG
TTCCCCTCCGCGACCGTGCCTTCAGGAAACCCAGCGGTTCAGGGGCGTGT
TCTCGTTTTTTTCTGGCCAAGGCTTGACTGCTGTCACGAAGCACTGTCTG
TCATTGGTCAGCCGATTGGCGCGGTCCATGTTTGTCAAAGAAATGCACGC
ACACACACACACACGCCCACCGAACACGCATCGTTGGCTTCTCCCCCCGG
ACGGGAATCTTGGCGTTACGCACTACGCAGTGTTCCCGCCCCAAAGGGCG
GGGGGTGGCGAGCAAGAAGAGACGACGAGCACGCCGGGGAGGGAGAAAGT
TCCGAAGAATATTCTGGTGGAAGGGGAAGAGGCCGCGGCGGGAGAGAAGG
GGGGCGGAGTGGGCCGTCCCCGCGGGGTAGGGGCCGCGGTGGAGACAACA
GCAGTGGCGGTGGTAACTCGGG back to topCoding sequence (CDS) from alignment at P-lacustris_contig93:226253..231374- >mRNA_P-lacustris_contig93.15726.1 ID=mRNA_P-lacustris_contig93.15726.1|Name=mRNA_P-lacustris_contig93.15726.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1224bp|location=Sequence derived from alignment at P-lacustris_contig93:226253..231374- (Pleurocladia lacustris SAG_25_93) GGTCTGGGGGAAGGGTTCGTGGAGGCTTGCCTGTCGGTGCTCGGCTGGTC GCCACAGGGTCTGGGGGAAGGGTTCGTGGAGGCTTGCCTGTCGGTGCTCG GCTGGTCGCCACAGGGCGTGATCGAGGCTATCCTGGAAGACCGCTTGCCA CCTCAAGTCGCCAGTCTTCACCGCGGGTTGCGCCGGGCATGGAAGGGCGT GATCGAGGCTATCCTGGAAGACCGCTTGCCACCTCAAGTCGCCAGTCTTC ACCGCGGGTTGCGCCGGGCATGGAAGAGCAAGAAGGGAGACCTCGACAAG GCCTACCGTGTAGACAAAGACTTGGCGGCCGCGGAGGCGAAGCGGCTTAT CGCGATGGAGAATCGGCAAGAGGACGACGCCTACCTCCTAGACAGGGAAT ACGACGACGACTACGACGACCAGAGCAAGAAGGGAGACCTCGACAAGGCC TACCGTGTAGACAAAGACTTGGCGGCCGCGGAGGCGAAGCGGCTTATCGC GATGGAGAATCGGCAAGAGGACGACGCCTACCTCCTAGACAGGGAATACG ACGACGACTACGACGACCAGTATGACGACCGCGAGGTTGATGTCGGAGGC GGGGGGCGTGGGGACGACTTAGAGACGGTGCGACGGGTTAATCAGCTCAT TCGTCAGGAGGAAGAGGAGGACGCTTGGTGGGAGAGTAACAAGAACAACA ACCTCAGTATGACGACCGCGAGGTTGATGTCGGAGGCGGGGGGCGTGGGG ACGACTTAGAGACGGTGCGACGGGTTAATCAGCTCATTCGTCAGGAGGAA GAGGAGGACGCTTGGTGGGAGAGTAACAAGAACAACAACCTCAGTGTTCC CGCCCCAAAGGGCGGGGGGTGGCGAGCAAGAAGAGACGACGAGCACGCCG GGGAGGGAGAAAGTTCCGAAGAATATTCTGGTGGAAGGGGAAGAGGCCGC GGCGGGAGAGAAGGGGGGCGGAGTGGGCCGTCCCCGCGGGGTAGGGGCCG CGGTGGAGACAACAGCAGTGGCGGTGGTAACTCGTGTTCCCGCCCCAAAG GGCGGGGGGTGGCGAGCAAGAAGAGACGACGAGCACGCCGGGGAGGGAGA AAGTTCCGAAGAATATTCTGGTGGAAGGGGAAGAGGCCGCGGCGGGAGAG AAGGGGGGCGGAGTGGGCCGTCCCCGCGGGGTAGGGGCCGCGGTGGAGAC AACAGCAGTGGCGGTGGTAACTCG back to top
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