mRNA_P-lacustris_contig93.15716.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig93.15716.1
Unique NamemRNA_P-lacustris_contig93.15716.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig93.15716.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.690e-6
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   40 EEHLPFMVTHTLVKVLQDPLLSVHYQ 117
            EEHLPFMVTHT+VKVL+DPLLS HYQ
Sbjct: 2103 EEHLPFMVTHTMVKVLRDPLLSAHYQ 2128
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig93.15716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7N2_9PHAE5.690e-688.46LysM domain-containing protein (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig93contigP-lacustris_contig93:117011..117522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size292
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.9354641-CDS-P-lacustris_contig93:117010..1171271622817356.9354641-CDS-P-lacustris_contig93:117010..117127Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 117011..117127 +
1693495002.500986-CDS-P-lacustris_contig93:117010..1171271693495002.500986-CDS-P-lacustris_contig93:117010..117127Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 117011..117127 +
1622817356.946282-CDS-P-lacustris_contig93:117347..1175211622817356.946282-CDS-P-lacustris_contig93:117347..117521Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 117348..117521 +
1693495002.514482-CDS-P-lacustris_contig93:117347..1175211693495002.514482-CDS-P-lacustris_contig93:117347..117521Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 117348..117521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig93.15716.1prot_P-lacustris_contig93.15716.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig93 117011..117521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig93.15716.1

>prot_P-lacustris_contig93.15716.1 ID=prot_P-lacustris_contig93.15716.1|Name=mRNA_P-lacustris_contig93.15716.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=97bp
CDSPRRRVRSLEEEEHLPFMVTHTLVKVLQDPLLSVHYQSAVQTAVEVCC
GLGFSRLTGVMANADGLASMNMPGVAGDLSAVEGRAGGRRAGGGWGG
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mRNA from alignment at P-lacustris_contig93:117011..117522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig93.15716.1 ID=mRNA_P-lacustris_contig93.15716.1|Name=mRNA_P-lacustris_contig93.15716.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=512bp|location=Sequence derived from alignment at P-lacustris_contig93:117011..117522+ (Pleurocladia lacustris SAG_25_93)
TGCGACTCGCCCCGCAGACGCGTTAGGAGCCTGGAGGAGGAGGAACATCT
GCCGTTCATGGTGACCCACACGCTGGTGAAAGTTCTTCAGGACCCGCTTC
TGAGCGTGCATTACCAGGTGGAAGTTCCGACGAAAGTAGGGACTGCTGCG
CGGTGGTGCCCGCCAAGCGCGCCTTCGAAACCGGCCGAGTGTCAATTGTC
AAACGACGCGCGTATACTAGACGTCGAGTATATGTTGCAAGTACGTTATA
TTTTGTTGCCCTCTCTTCAGCCCAGGCCTGACCAGACCTCCTTCGCCTCC
CCGCCCCGCCGCTTCCACCTGATCCGAATCCCTCCAGTCTGCTGTCCAGA
CGGCAGTCGAGGTCTGCTGCGGACTCGGCTTCAGCCGCCTCACGGGGGTC
ATGGCCAACGCGGACGGGCTGGCGAGCATGAATATGCCCGGCGTGGCCGG
TGACTTGAGCGCGGTCGAGGGCCGCGCAGGCGGGAGGAGAGCCGGGGGCG
GCTGGGGCGGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig93:117011..117522+

>mRNA_P-lacustris_contig93.15716.1 ID=mRNA_P-lacustris_contig93.15716.1|Name=mRNA_P-lacustris_contig93.15716.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=582bp|location=Sequence derived from alignment at P-lacustris_contig93:117011..117522+ (Pleurocladia lacustris SAG_25_93)
TGCGACTCGCCCCGCAGACGCGTTAGGAGCCTGGAGGAGGAGGAACATCT
GCCGTTCATGGTGACCCACACGCTGGTGAAAGTTCTTCAGGACCCGCTTC
TGAGCGTGCATTACCAGTGCGACTCGCCCCGCAGACGCGTTAGGAGCCTG
GAGGAGGAGGAACATCTGCCGTTCATGGTGACCCACACGCTGGTGAAAGT
TCTTCAGGACCCGCTTCTGAGCGTGCATTACCAGTCTGCTGTCCAGACGG
CAGTCGAGGTCTGCTGCGGACTCGGCTTCAGCCGCCTCACGGGGGTCATG
GCCAACGCGGACGGGCTGGCGAGCATGAATATGCCCGGCGTGGCCGGTGA
CTTGAGCGCGGTCGAGGGCCGCGCAGGCGGGAGGAGAGCCGGGGGCGGCT
GGGGCGGGTCTGCTGTCCAGACGGCAGTCGAGGTCTGCTGCGGACTCGGC
TTCAGCCGCCTCACGGGGGTCATGGCCAACGCGGACGGGCTGGCGAGCAT
GAATATGCCCGGCGTGGCCGGTGACTTGAGCGCGGTCGAGGGCCGCGCAG
GCGGGAGGAGAGCCGGGGGCGGCTGGGGCGGG
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