mRNA_P-lacustris_contig926.15685.1 (mRNA) Pleurocladia lacustris SAG_25_93
|
Overview
Homology
BLAST of mRNA_P-lacustris_contig926.15685.1 vs. uniprot
Match: D8LTM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM1_ECTSI) HSP 1 Score: 411 bits (1056), Expect = 6.610e-114 Identity = 372/1145 (32.49%), Postives = 479/1145 (41.83%), Query Frame = 1
Query: 307 LDILDSYEHFENLGDLEPSVVSSDQDVVLENVYFAKGEVENVGGVQSETTGGAFDLGMTFGDG-DCS--KPYSQALSVEIVGCGFTMEHLAHQKMSVALACVEKNSSTNSASSDSDVEVATLGFGGAVPDSCDIDEVLNASVEASGDPAVDDTTEGTTDGGDFGTFHGDSTVTSXXXXXXVSAGNGDINSYGASAAGICTELLNVIEAAGTEAFLAIREEFPLPFETSSEDCEFRTVRVTLDTWAGSSPKAAFFDLEDNDYDLSGLELSATLVYPSDGSVEISSEKVSDGEMSAIDGYESGSRGFDFAIGFEGESDVIGLDLTGCGLTVESFVGNRATIVATDNDNGNTYTLVESNVDCIVEEASGTPPTPAPTFLPAATPAPVVL*PLGRPMLPVLR*LLGQRFLRHKPSFPRVR*VSGGREGYHLDLDLCAPLSAAIAP*TYTFDVAWCSEVAWCSLSIRYPLI*VNEPPWCAFRSVLFFLHLFSLQNHGTRDIVDSPAPPSVPTHRPAHYDVFPPILMHRVAAFSCWRGF*WKAVRSNLTN*HDMIRAAVEYPLIFPLDRHRFVKHCSTTSEDLLRPTKVM*SEAQTEHGTRNTHYDATVLVFIPSQAXXXXXXXXXXXXXXXXXXXXXXXXXPVADLGGTVSGSLSISGVDPATEDEEVYEAAREGLAEAFGLPDVSSVSVGAPGTLLGSTGSGGDDDLVDGYGDDYSGDDVAEETVTGGSGDSHQRGRRRRASETRLPTWQISSRDARDDSANLRHQQYYLVGAAGVSPQYGDGYGVPRYRSRXXXXXXXXXXXGLQEDEGSGETVDMDFEVLLPADGGEGAASPAARVAAVLNEYADDTDGWAVTLADSLGY------LFSLTFCTGSSSNDCGNVSTVVTTQNVVDELGTSGPWENFMLNGGFLMITLFGTLCLCFCLAAMCYHLLFNGEAYENVEILKPVSSVSDVPANRSGPSSASKEREEMSLYPTGLFERSGISSLPDRRPRVFYDEKQPGIGLTGRVDDSKEG--EHVEVGYRMASPATSRTTVSSAHWTASHFGRKASSEYDLQNPLRGTTMDFAEVNRRFRDMVVVSCPHIPLTPVSFCLRAFHVRNLVKTSSTSTEPHPTWVGHFGQNRLEGDFKTTNPMFLGRDTGSRS 3708
++I D Y HF+ LGD P+VVS D D +E +Y VE+VGGV+ E+ GG+FD+G+ FGDG DCS + + Q + V++VGCG T+ HL+ Q MSV C+ + D EVAT+GFG +VP+SCD DEVL ASVEA+ + D + ST ++ AA CTEL+NV++AAG AF+AI+E+ PL FETSS++CE+RTV VT +TWAGSS KAAFFDLE V +G +SAIDGYESGS GFDFAI F+G+SDV+ +DL GCGLTV+SF GNRAT V T + GNTY L +S++DC+VE TPAPT G F P+ + G FP L S +S + A +G TV+GSL++ G D RRR SE PT +S RD++ +L H Q A G YG + R +ED GS ETVD+DFEV +PAD G G S A+RVAA++NE+AD G A LADSLG L L FC G+++ CGNVST+V+T + VDELGTSGPWENF+ NGG L++ LFGTLC+CFC A +C+H LFNG YE+VE+LKPV +V PA + KE+E++S +F+ S +S+ R +D+ G G DSK G + +E G R SPATS+TT+ S HW S FG+K S+EYDLQNPLR D E RRF DM + T TE +GH+G +R EG+FKTTNPMFLG D S S
Sbjct: 1 MEISDDYSHFDKLGDFLPTVVSGDPDAEIEIIYMDDDSVESVGGVEPES-GGSFDVGIAFGDGRDCSSSQAFLQRVGVKVVGCGLTLAHLSFQGMSVVTTCL---------GAGMDTEVATVGFGRSVPESCDTDEVLKASVEAAETASWD--------------YASGSTSSTW-------------------AADRCTELVNVVDAAGASAFIAIKEDEPLSFETSSDNCEYRTVGVTFETWAGSSIKAAFFDLE-----------------------------VDEGNLSAIDGYESGSSGFDFAIAFDGDSDVVSVDLRGCGLTVDSFAGNRATFVVTGS--GNTYILGDSSLDCVVEFTD----TPAPTST-------------------------GTTF---SPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-----------------------FPSSL----------------------------------------------APSSSNSSMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGGGA-----------------------------VGATVTGSLTVVGEDG-----------------------------------------------------------------------------RRRMSEPVSPT--LSRHVRRDETKSLIHHQPETDLVAEARDPVGGFYGALGGQRRWLQEG--------EEDSGS-ETVDIDFEVSVPADDG-GIGSSASRVAAMVNEFADS--GLAA-LADSLGVEPEDISLSDLAFCIGTTN--CGNVSTMVSTMSAVDELGTSGPWENFLTNGGLLLLALFGTLCVCFCAAGVCFHCLFNGGGYEDVELLKPVPAV---PAKHT----VDKEKEQVSPR---VFDLSRMSNR--RLGAPDHDKHSDGDFPQGSRGDSKMGGGDFMEAGIRTVSPATSKTTIGSVHWM-SQFGQKNSAEYDLQNPLR-VPGDSVEGTRRFGDMAM--------------------------GKTQTE-EAGLIGHYGDDRSEGEFKTTNPMFLGADLDSAS 806
BLAST of mRNA_P-lacustris_contig926.15685.1 vs. uniprot
Match: A0A6H5JI45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI45_9PHAE) HSP 1 Score: 380 bits (977), Expect = 6.110e-103 Identity = 389/1215 (32.02%), Postives = 488/1215 (40.16%), Query Frame = 1
Query: 307 LDILDSYEHFENLGDLEPSVVSSDQDVVLENVYFAKGEVENVGGVQSETTGGAFDLGMTFGDG-DCS--KPYSQALSVEIVGCGFTMEHLAHQKMSVALACVEKNSSTNSASSDSDVEVATLGFGGAVPDSCDIDEVLNASVEASGDPAVDDTTEGTTDGGDFGTFHGDSTVTSXXXXXXVSAGNGDINSYGASAAGICTELLNVIEAAGTEAFLAIREEFPLPFETSSEDCEFRTVRVTLDTWAGSSPKAAFFDLEDNDYDLSGLELSATLVYPSDGSVEISSEKVSDGEMSAIDGYESGSRGFDFAIGFEGESDVIGLDLTGCGLTVESFVGNRATIVATDNDNGNTYTLVESNVDCIVEEASGTPPTPA-PTFLPA---------------ATPAPVVL*PLGRPMLPVLR*LLGQRFLRHKPSFPRVR*VSGGREGYHLDLDLCAPLSAAIAP*TYTFDVAWCSEVAWCSLSIRYPLI*VNEPPWCAFRSVLFFLHLFSLQNHGTRDIVDSPAPPSVPTHRPAHYDVFPPILMHRVAAFSCWRGF*WKAVRSNLTN*HDMIRAAVEYPLIFPLDRHRFVKHCSTTSEDLLRPTKVM*SEAQTEHGTRNTHYDATVLVFIPSQAXXXXXXXXXXXXXXXXXXXXXXXXXP----------------------VADLGGTVSGSLSISGVDPATEDEEVYEAAREGLAEAFGLPDVSS--VSVGAPGTL------------------------LGSTGSG--GDDDLVDGYGDDYSGDDVAEETVTGGSGDSHQRGRRRRASETRLPTWQISSRDARDDSANLRHQQYYLVGAAGVSPQYGDGYGVPRYRSRXXXXXXXXXXXGLQEDEGSGETV----DMDFEVLLPADGGEGAASPAARVAAVLNEYADDTDGWAVTLADSLGY------LFSLTFCTGSSSNDCGNVSTVVTTQNVVDELGTSGPWENFMLNGGFLMITLFGTLCLCFCLAAMCYHLLFNGEAYENVEILKPVSSVSDVPANRSGPSSASKEREEMSLYPTGLFERSGISSLPDRRPRVFYDEKQPGIGLTGRVDDSKEG--EHVEVGYRMASPATSRTTVSSAHWTASHFGRKASSEYDLQNPLRGTTMDFAEVNRRFRDMVVVSCPHIPLTPVSFCLRAFHVRNLVKTSSTSTEPHPTWVGHFGQNRLEGDFKTTNPMFLGRDTGSRS 3708
++I + Y HF+ LGD P+VVS D D +E +Y G VE+VGGV+ +GG+FD+G+ FGDG DCS + + Q + VE+VGCG T+ HL+ Q+MSV C+ + D EVAT+GFG +VP++CD DEVLNAS EA+ + DD + T+ AA CTEL+NV++AAGT AF+AI+E+ PL FET +V +G +SAIDGYESGS GFDFAI F+G+SDV+ +DL GCGLTV+SF GNRAT V T + GNTY L +S++DC+VE PT TF P P A Q XXXXXXXX V D+G TV+GSL++SGV TE+EEVYEAAREGL E FG+ V VGAPGTL +G+ +G DDD+ G AE V G G RRR SE P +S D RD++ +L H Q A G G+ V R LQE+E DMDFEV +PAD GE S A+RVAA++NE+AD G A TLAD LG L L FC GS+ DCGNVSTVV+T + VDELGTSGPWENF+ NGG L++ LFGTLC+CFC A +C+H LFN AYE+VE LKP V PA + KE+E++S L S + +RR RV D+ G G SK G + +E G R SPATS+TT+ S HW S FG K S+EYDLQNPLRG D E RRF DM + + AF V + +GH+ +R EG+FKTTNPMFLG D S S
Sbjct: 1 MEISEDYSHFDKLGDFRPAVVSGDPDAEIEIIYMDDGGVESVGGVEP-ASGGSFDVGIAFGDGRDCSSSQAFLQQVGVEVVGCGLTLAHLSFQRMSVVTTCL---------GAAMDTEVATVGFGRSVPEACDEDEVLNASEEAAETASWDDASGSTSS---------------------------------TWAADRCTELVNVVDAAGTSAFIAIKEDEPLSFET---------------------------------------------------------RRVDEGNLSAIDGYESGSSGFDFAIAFDGDSDVVSVDLRGCGLTVDSFAGNRATFVVTGS--GNTYILGDSSLDCVVEFTDTPSPTSTGTTFSPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQTGFPSSLAPSSSNSSVSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGDVGATVTGSLTVSGVAEETEEEEVYEAAREGLEELFGISSAGGGGVVVGAPGTLDSDXXXXXXXXXXXXXXXXXXXXVVGTAAAGVAADDDIGAG---------TAE--VIGEDG-------RRRMSERVPPA--LSRYDRRDEATSLSHYQPEAGLVAEARDPLG-GFNVALGGQRRW----------LQEEEXXXXXXXXXXDMDFEVTVPADDGE-IGSSASRVAAMVNEFADS--GLA-TLADYLGVEPDDLSLSDLAFCIGST--DCGNVSTVVSTMSAVDELGTSGPWENFLTNGGLLLLALFGTLCVCFCAAGVCFHCLFNDGAYEDVEHLKPAPVV---PAKHT----VDKEKEQVSPRVIDL------SRMSNRRLRVPDDKHSDGDFPQGSRGGSKMGGGDFMEAGIRTVSPATSKTTIGSVHWM-SQFGHKNSAEYDLQNPLRGPG-DSVEGTRRFGDMAMD-------VRARWLRAAFEALAGVGIKGKTETEEAGLIGHYRDDRSEGEFKTTNPMFLGADLDSAS 1054 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig926.15685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig926.15685.1 >prot_P-lacustris_contig926.15685.1 ID=prot_P-lacustris_contig926.15685.1|Name=mRNA_P-lacustris_contig926.15685.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=695bp MTGSLSPGPAASPKGVQSSGNNELPDDAAASAWLPARAATSRPSNLPPSSback to top mRNA from alignment at P-lacustris_contig926:8285..33414- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig926.15685.1 ID=mRNA_P-lacustris_contig926.15685.1|Name=mRNA_P-lacustris_contig926.15685.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=25130bp|location=Sequence derived from alignment at P-lacustris_contig926:8285..33414- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig926:8285..33414- >mRNA_P-lacustris_contig926.15685.1 ID=mRNA_P-lacustris_contig926.15685.1|Name=mRNA_P-lacustris_contig926.15685.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=4170bp|location=Sequence derived from alignment at P-lacustris_contig926:8285..33414- (Pleurocladia lacustris SAG_25_93)back to top |