mRNA_P-lacustris_contig124.1741.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig124.1741.1
Unique NamemRNA_P-lacustris_contig124.1741.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig124.1741.1 vs. uniprot
Match: D8LU96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU96_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 2.870e-63
Identity = 134/251 (53.39%), Postives = 162/251 (64.54%), Query Frame = 1 
Query:    1 CWTVDRHELVGKLVRRLAFDFVAVSNVFRDHLKSDGVVFSPQETSPTSLRKVFARIDRKRTSSAVTGEPITSADRKHDEPEVESDGTLGDASGRDWDIMIGASRGHLNGRTQGALRKQYSSSQL-ELNNRL----RGEATG---DHSFEGENVSET----ESARALSSPSS----DESAWDFDRFLEEQRRKEIQHDDHKAKVFQKEDRNLAFQRQSLKQRHLAGSEDGVGEDPLALPAGCTASASQEREG 705
            CWT DR+ELVGKLVRR AFDF AVSN FR+HL+ +GV F  +ET+P +LRKV+A +DRKR   AV   P+    +++DEP  E+D TL D SG DWD M   S+G LNG   G L    S S   E  N L    R +  G   D   E E+V  T    E  +++++PSS    DES WDF RFLEEQR KEIQHDD K K+FQKEDR+LA QRQSLK+R+L  SED +GEDPL L    TA A Q+ EG
Sbjct:    5 CWTPDRNELVGKLVRRFAFDFDAVSNAFRNHLQREGVDFKSEETAPAALRKVYASLDRKRPPRAVESAPLPGVRKENDEPGGEADRTLVDVSGGDWDSMGTGSQGKLNGYIMGNLHSSRSGSVTGEGYNNLPPPERSDQLGASDDCPSEREDVQHTSGSDEGEKSVTAPSSLPSTDESGWDFGRFLEEQRLKEIQHDDRKEKIFQKEDRHLACQRQSLKKRYLLDSEDFIGEDPLGLLDDTTAPAFQQEEG 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig124.1741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU96_ECTSI2.870e-6353.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig124contigP-lacustris_contig124:8241..12611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004190.1
Exons5
Model size991
Cds size450
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.365575-UTR-P-lacustris_contig124:8240..83721622815554.365575-UTR-P-lacustris_contig124:8240..8372Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 8241..8372 -
1693493608.6280549-UTR-P-lacustris_contig124:8240..83721693493608.6280549-UTR-P-lacustris_contig124:8240..8372Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 8241..8372 -
1622815554.375369-UTR-P-lacustris_contig124:8839..89541622815554.375369-UTR-P-lacustris_contig124:8839..8954Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 8840..8954 -
1693493608.64-UTR-P-lacustris_contig124:8839..89541693493608.64-UTR-P-lacustris_contig124:8839..8954Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 8840..8954 -
1622815554.402624-UTR-P-lacustris_contig124:10433..105861622815554.402624-UTR-P-lacustris_contig124:10433..10586Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 10434..10586 -
1693493608.6707568-UTR-P-lacustris_contig124:10433..105861693493608.6707568-UTR-P-lacustris_contig124:10433..10586Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 10434..10586 -
1622815554.416169-UTR-P-lacustris_contig124:12190..122841622815554.416169-UTR-P-lacustris_contig124:12190..12284Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 12191..12284 -
1693493608.6794915-UTR-P-lacustris_contig124:12190..122841693493608.6794915-UTR-P-lacustris_contig124:12190..12284Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 12191..12284 -
1622815554.4261115-UTR-P-lacustris_contig124:12564..126111622815554.4261115-UTR-P-lacustris_contig124:12564..12611Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 12565..12611 -
1693493608.6890752-UTR-P-lacustris_contig124:12564..126111693493608.6890752-UTR-P-lacustris_contig124:12564..12611Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig124 12565..12611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815554.3845212-CDS-P-lacustris_contig124:8954..91281622815554.3845212-CDS-P-lacustris_contig124:8954..9128Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 8955..9128 -
1693493608.6547892-CDS-P-lacustris_contig124:8954..91281693493608.6547892-CDS-P-lacustris_contig124:8954..9128Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 8955..9128 -
1622815554.3935096-CDS-P-lacustris_contig124:10157..104331622815554.3935096-CDS-P-lacustris_contig124:10157..10433Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 10158..10433 -
1693493608.662666-CDS-P-lacustris_contig124:10157..104331693493608.662666-CDS-P-lacustris_contig124:10157..10433Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig124 10158..10433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig124.1741.1prot_P-lacustris_contig124.1741.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig124 8955..10433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig124.1741.1

>prot_P-lacustris_contig124.1741.1 ID=prot_P-lacustris_contig124.1741.1|Name=mRNA_P-lacustris_contig124.1741.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=150bp
MIGASRGHLNGRTQGALRKQYSSSQLELNNRLRGEATGDHSFEGENVSET
ESARALSSPSSDESAWDFDRFLEEQRRKEIQHDDHKAKVFQKEDRNLAFQ
RQSLKQRHLAGSEDGVGEDPLALPAGCTASASQEREGVGRIVSSSFLER*
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mRNA from alignment at P-lacustris_contig124:8241..12611-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig124.1741.1 ID=mRNA_P-lacustris_contig124.1741.1|Name=mRNA_P-lacustris_contig124.1741.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4371bp|location=Sequence derived from alignment at P-lacustris_contig124:8241..12611- (Pleurocladia lacustris SAG_25_93)
TGCTGGACAGTGGATCGACATGAACTGGTGGGGAAGCTCGTTCGACGGTG
AGCGAATGCCGCATAAAGTGAGACTTTACTTGTACAACGCTGATATGCTG
TAGACTACTACTACTGCTGAAAACCTAAAACCTTTAGTCTAACTACAGTG
TAGAGAAGTTTGTTCTCATGTGTATGCATATGACGATTGCACAGATCGCG
CCCGAGGACTGCGCGCGTCGGCGATTTGGGGTTTGTGTATTCCTGCCCCA
GATTGACGGATCCGTTTGCTCTCTCTCTCTCTCTCTCTCTCTCTGCCGCT
CTCTGCGTACCTATCGTGTTTGCTCAGGCTCGCCTTCGATTTTGTTGCCG
TATCAAACGTATTCCGAGATCATTTGAAAAGCGATGGCGTGGTTTTCAGT
CCGCAAGAAACGAGTCCGACGGTAAGGCGCCGCGGTTTCTGACGAGATCA
GGGAACTTTTAGAAAATATACATAACATCACCAAAAGACTACCACCTAGC
TAGGAAATGCCCCGTAGATGGCTTCATTTTCATATACGGAGTACTGTAGT
CCCCATAGTGAAGGTTGGAATGATACCTGCCGCCTATTGACTTATTTGTA
TGTGTTGAAGTGTCTACGCTGTGCGGCCGGAAGAAAAACACCTGTAGAGG
TATATAAATGTAAAAACTCCCCGGCAAACCTCTGCCAGGTCTACGACAGT
ATTTGGGGAGAAACCCGCCGTTATGTCGTGTTTTACTGTACCTCCACAGG
AACACCTCGTAGTGTCTGCATGAGAGACATCTATCTTATCGTTTTATACT
ACAACCAAAAACATTTACAGCAGTAGTTTACAAAATCCATAAACTTCATT
ATCCGGCGGCGGTAACTACATGATGACATCTTATTGTATAATAGTTTTTA
GAATATATTATAATGTACAGCAGTAGTCTAGTGGTTAGCCTGTGACCACG
GGAACTGACCTCGTCCAGTGTTGGATTTGTACGGAGAGATTGCGACGGAC
GGAGGTACTGGATAGAGAGACCGGGATGGTTTTTGATGTGAAGACAAGAA
CAAGTAGTGAGGCTAAAATTGCATGGTTTCAAGTGTATCTACAATAATAC
TTCCTCTCGTGTTGCTCCGTATATATAGTTGACGATAGCACGGTTCCATT
GCAGCGAGGTGCGTATACTCTACGATTTAGTTATTGTACCAATGGTATGC
AGCATGAGTCTGTGTGTAAGTATGTAGATTGGTAGAACATTGAGAGTACA
GCAGTAGTAGTGTTGAGCTAGTGAGGATGCGTCATCAATAGTTCCTTTCG
AATTGTATGAATGGCTAAAATTGCATGGTTTCAAGTGTATCTACAATACT
TCCTCTCGTGTTGCCCGTGTAGTTAGAACTTTGCAGAAACGTCTCCACGT
TCTTGGGCCTGCTATGTACAAGTAAGCCATAAGTTCTGTGGCAAAGCAGA
TGCTCACATGTAAAAAGAATGTGGCCTGACTGAGATGACTGAGATTTTCT
GCGCGCGAAGCCCATCACACGAGTAAGGACTAGGAGCAATCCTTATTTAG
TCTAACCATAATAATATGGATACCGCCCACTATCAGCTCTGCCAGCGGAG
GCGATGCGTCTTCGTATATTTATAGGTTGTGAGGTAAGCCGAACGTGACC
GTGTGTCCTCGGTCAAGGTAGGTTGATAGCGCTGGAAAATCTGGAGCACG
GGGGAGCCTTTGCGGCCTATTGCCCCGAATCCAGGCCCCTGGGTTACCCC
CAGAACACATCTCTCCGGGGAATAGTCTCTCCATGCCAAACGTTGATGCT
TAGTGTAGGTGTAGGTGTAGGTGACCCCTGTGGTTGAATGGATAACCCAG
GGGTCTACTCTTTCTCGAGGTTTAGGGTAATCCACTTCATCATAGGAGTA
GGTAGTCAGCGCTAACTGCGGTTAGGTTAATGACTGTCCCTAAACCTAAC
AAGAGGACCGCATACTCAGTTTCTCAAACATTCACCCGCGCACCCGCCCA
CGCATGCCACCTTTTCTAAATCCAGTCACTGAGAAAAGTATTCGCGAGGA
TCGATCGAAAGAGAACTTCATCTGCGGTAACCGGCGAGCCCATAACGAGC
GCCGACAGAAAGCACGACGAACCCGAGGTGGAAAGCGATGGCACTCTTGG
TGACGCGTCGGGTCGTGATTGGGACATCATGATAGGCGCTTCGAGAGGGC
ATCTCAACGGTCGCACCCAGGGCGCTCTGCGTAAGCAGTACTCCAGTTCA
CAACTTGAACTGAACAATCGACTTAGAGGCGAAGCAACGGGCGATCACTC
TTTTGAAGGAGAAAACGTATCTGAAACAGAATCAGCACGTGCATTGTCCT
CCCCGTCGTCAGACGAATCAGCTTGGGATTTCGACAGATTCCTTGAGGAA
CAGAGGCGGAAAGAGATTCAACACGACGATCACAAGGCGAAGGTATTCCA
GAAGGTGCGTGACGGATTCGACTCGTACATGCGGTAGAGCAGAAGTTGGA
CCTGTGAAACATTGGCCTCCAGTAGGTGTACCTTGTACGCGATTCAAGTA
TACACTTGATTGCTTATCAGTTTGGCTCGCACCGATCAGGGTGTTGAAAC
CTCGTGCATAATTATAGTTCAGCCCACAACTAAACTCGTGACATCCGACA
ACACAGTGAACTTCTACGGATGGACACTGCTTGTTTCGTTCGATACTGGG
CTACCTACCGTAGAATCGTAACGTGGAATTTCTGGCTCGTGCTTGCATTG
GAAGGTGTTGGCAGCCCTTGGAAGCACCGGCGAAGCTTCCAATGTTGGTG
ATATTCCACCAGACATCCTCCAGGCGTGGGGAGCGCGAAACGAAAGGCAT
GCTGTGCAGGCCGAAAGAGCCCAGAAACGTCAGCAAAAATTCGAGGTCGG
AAGGTTGGTTTGGAGCCGTTGAGGGGTTCTTGTTAGTTATGCAGGAAATC
ATTCCTTCAAAGACAACCGTGGTTCTTGTATCGTGAAAACGACAGTAGTC
TGAAACTTGACATTCAGAGAGCGCGTACCAGACCCTGTCGCAGCCAGGAT
AGGGTCTATTTCCTTAGCATTTGCTGTAGCAAAGTGTAGTGTGTGACTGG
CAAAGCTGTGTCAACGTGAGTAGCAATCTGCAGAGTTCGCTCGTCCGTTT
ACATGGTACGTCATTTCTCTGCTTGCTTTCCTGACCCATCCCAACTCGCT
ATAGTCTTTCGAACACGTGGCGACCAGTTGACGCCACAACTTTGTTTCTG
AAAGAGGCGCAAATGCCGTACTAACCCCAGAAGTACAGAAATGTGGTTAT
CGTACACCAACACCAACACGCAAGCGCAGAGCGTTGTCTTTCCACTGAGG
AACTTGAAGGCAACCGGGGGACGGGGTGGGGGTGGGGGCTGGCCGATTTC
AAGACAAACGAACCTTTGCTCCAACACACGAGCGATTTTTCCAACCACTG
AATGTGATGCCGGTAATCCACTTCAACGACCAGGAGGATCGCAACCTAGC
CTTCCAGCGCCAGTCGTTGAAACAGCGACATCTTGCGGGCAGCGAGGACG
GTGTTGGCGAGGATCCTCTCGCTCTTCCCGCCGGCTGCACTGCTTCGGCG
TCCCAGGAAAGGGAGGGGGTCGGGAGGATTGTCTCCTCGTCATTCCTTGA
GCGTTGAGGAGGAGCAGGATGGTTGTGACGCCTTCACTCAACACCAAGAA
GCCGAAAGGCCCGTGCGGCTAGAGCTAGGAATGGACGCGGAAGTGCTTGA
CAAAATTCTAGACGAGCTTGAGGTGAATGAATAATACATGTTATTGTTCT
AGTCGTCCCGCATTTGGTCTGCCAAATCATCGCGCACGGAAATATGTAGC
TCTCGCACGAAAATCGGGCACGTGTATGAAACCTTAGACTGCAATGCTGC
ATTAGCTTTTCTCGAGCGTGGATTTTATGAGTTCATAGACCGGTCAGTCG
AGCATTGTCATTTTCGAACCACGAGTGCCCGCATCGTGGCAGAGAAACTA
GCGCCCCTCATCAAGAGAGATCTGTGGTTGGTCAGCGGCCGCAGCATTTG
TTTTTCGACCTTAGAATTCTGTTGCTGTTTTGATTTTTCTGGTGATGTTG
CTGTAAGGAAAACAAAACAATGGCAGAGACAGATGAAACCGTGAGCGATG
CGCGAATTGATGACTGCGAAACACACGACGTCGCTAAACCTCCCATCTTG
ACCCTTCCTCGCACAACCGGCTCGATAATCCTGCTACAGCGAGAGTCTCC
CGTTGCCGTAGGCGGCTCCAGAGACACCAAATCCGAGTTATCGCGAGTTC
TCGATGAGCTTGATAAAGCCGCCGGCGCAAAACCCGCGATCAATTCGCTC
CATCTTCGGGATATCCAGGAA
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Coding sequence (CDS) from alignment at P-lacustris_contig124:8241..12611-

>mRNA_P-lacustris_contig124.1741.1 ID=mRNA_P-lacustris_contig124.1741.1|Name=mRNA_P-lacustris_contig124.1741.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=900bp|location=Sequence derived from alignment at P-lacustris_contig124:8241..12611- (Pleurocladia lacustris SAG_25_93)
ATGATAGGCGCTTCGAGAGGGCATCTCAACGGTCGCACCCAGGGCGCTCT
GCGTAAGCAGTACTCCAGTTCACAACTTGAACTGAACAATCGACTTAGAG
GCGAAGCAACGGGCGATCACTCTTTTGAAGGAGAAAACGTATCTGAAACA
GAATCAGCACGTGCATTGTCCTCCCCGTCGTCAGACGAATCAGCTTGGGA
TTTCGACAGATTCCTTGAGGAACAGAGGCGGAAAGAGATTCAACACGACG
ATCACAAGGCGAAGGTATTCCAGAAGATGATAGGCGCTTCGAGAGGGCAT
CTCAACGGTCGCACCCAGGGCGCTCTGCGTAAGCAGTACTCCAGTTCACA
ACTTGAACTGAACAATCGACTTAGAGGCGAAGCAACGGGCGATCACTCTT
TTGAAGGAGAAAACGTATCTGAAACAGAATCAGCACGTGCATTGTCCTCC
CCGTCGTCAGACGAATCAGCTTGGGATTTCGACAGATTCCTTGAGGAACA
GAGGCGGAAAGAGATTCAACACGACGATCACAAGGCGAAGGTATTCCAGA
AGGAGGATCGCAACCTAGCCTTCCAGCGCCAGTCGTTGAAACAGCGACAT
CTTGCGGGCAGCGAGGACGGTGTTGGCGAGGATCCTCTCGCTCTTCCCGC
CGGCTGCACTGCTTCGGCGTCCCAGGAAAGGGAGGGGGTCGGGAGGATTG
TCTCCTCGTCATTCCTTGAGCGTTGAGAGGATCGCAACCTAGCCTTCCAG
CGCCAGTCGTTGAAACAGCGACATCTTGCGGGCAGCGAGGACGGTGTTGG
CGAGGATCCTCTCGCTCTTCCCGCCGGCTGCACTGCTTCGGCGTCCCAGG
AAAGGGAGGGGGTCGGGAGGATTGTCTCCTCGTCATTCCTTGAGCGTTGA
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