mRNA_P-lacustris_contig1226.1683.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1226.1683.1
Unique NamemRNA_P-lacustris_contig1226.1683.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: A0A6H5KSN1_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSN1_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 1.970e-73
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:   47 GGGHQNGSMEVEDRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 406
            G GHQ GSMEVEDRYEGRGGVFESVDVG  GGPQRSVEGWILFVRNVHEEAQEDDIMDKFSE+GAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQ AIDEMDGSQLL+QDISV+WAFV+G
Sbjct:   62 GRGHQGGSMEVEDRYEGRGGVFESVDVGSAGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEYGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQAAIDEMDGSQLLDQDISVSWAFVKG 181
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: A0A7S2G621_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G621_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.910e-50
Identity = 85/122 (69.67%), Postives = 98/122 (80.33%), Query Frame = 2 
Query:   47 GGGHQNG----SMEVEDRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFV 400
            GGG Q G        E+RY+GRGGVFESVD G  GGP +SVEGWILFVRNVHEEAQEDDI+DKFSE G V+N+HVNLDRRTGFVKGY LVEFE +EEA+ AI+ ++G +LL Q ISV WAF+
Sbjct:   38 GGGKQKGRGFKGGNDEERYDGRGGVFESVDAGGEGGPLQSVEGWILFVRNVHEEAQEDDILDKFSESGDVRNIHVNLDRRTGFVKGYALVEFESREEAENAIETLNGEELLGQTISVDWAFL 159
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: A0A7S2DBP5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBP5_9STRA)

HSP 1 Score: 157 bits (398), Expect = 8.850e-47
Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = 2 
Query:   47 GGGHQNGSMEVEDRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFV 400
            G GH   +M+ EDRY+GRGG+FESV+     GP  SVEGWILF+R VHEEAQEDDI+DKF E G V+N+HVNLDRRTGFVKGY LVE+E  EEA  AI+  +G +LL Q ISV WAF+
Sbjct:   32 GRGHTGTAMDTEDRYDGRGGIFESVETADGVGPAESVEGWILFIRGVHEEAQEDDILDKFLECGEVRNIHVNLDRRTGFVKGYALVEYESFEEATSAIETFNGQELLGQTISVDWAFL 149
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: A0A7S3GV69_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GV69_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.370e-45
Identity = 76/118 (64.41%), Postives = 93/118 (78.81%), Query Frame = 2 
Query:   47 GGGHQNG-SMEVEDRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAF 397
            G GH +G   +  DRY GRGGVFE++  G   GP +S+EGWI+FV NVH+EAQEDDI+DKFSE+G VKN+HVNLDRRTGFVKGY LVEFE+ ++AQ AI  +DG +LL+Q I V WAF
Sbjct:   40 GRGHNSGHDGDDGDRYNGRGGVFENIQRGSGAGPLQSIEGWIVFVTNVHQEAQEDDILDKFSEYGTVKNIHVNLDRRTGFVKGYALVEFEELKDAQAAIQGLDGKKLLDQVIQVDWAF 157
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: A0A7S2S198_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S198_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.230e-43
Identity = 76/128 (59.38%), Postives = 99/128 (77.34%), Query Frame = 2 
Query:   26 GKERRR*GGGHQNGSMEVEDRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRGA 409
            GK  +R G GH   +M+ E+RYEGRGGVF+S+  G   GP +SVEGWILFVR VHEEAQEDDI+DKF++FG V+N+ VNLDRRTGFVKGY L+E+ + +EA  A++ M+G ++L Q ISV WAF+  +
Sbjct:   33 GKSVKRKGRGHV-AAMDAEERYEGRGGVFDSI-AGDGPGPAKSVEGWILFVRGVHEEAQEDDILDKFADFGEVRNIAVNLDRRTGFVKGYALIEYAEHDEAAKALEAMNGDEILGQTISVDWAFLESS 158
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: A0A7S0E2Z3_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2Z3_9CRYP)

HSP 1 Score: 146 bits (369), Expect = 1.980e-42
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = 2 
Query:   80 EDRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRGALR 415
            EDRY G+ G FESVD     GP +SVEGWI+FV  +HEEA E+DI DKFSE+G +K + + LDRRTGFVKGY LVE+EKK EAQ AI++M+G++L+EQ ++V WAF +G +R
Sbjct:   37 EDRYAGKSGQFESVDTEGGPGPSKSVEGWIVFVMGIHEEANEEDIYDKFSEYGEIKQMQLPLDRRTGFVKGYALVEYEKKSEAQKAIEQMNGAELMEQTLTVDWAFSKGPIR 148
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: A0A7S0WPK5_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WPK5_9CHLO)

HSP 1 Score: 144 bits (364), Expect = 1.630e-41
Identity = 67/116 (57.76%), Postives = 93/116 (80.17%), Query Frame = 2 
Query:   68 SMEVEDRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRGALR 415
            +M+VE R+ G+   +ES++ G   GP +SVEGWI+ V  VHEEAQEDD+ + F+E+G ++NLH+NLDRRTGFVKGY ++E+E K+EAQ AID ++G+QLL+Q ISVTWAF +G L+
Sbjct:   47 AMDVEQRFTGK---YESLESGTGPGPAKSVEGWIVMVTGVHEEAQEDDLHEAFAEYGEIQNLHLNLDRRTGFVKGYAMLEYESKKEAQAAIDSLNGTQLLDQTISVTWAFSKGPLK 159
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: A0A6U2CUA9_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A6U2CUA9_HEMAN)

HSP 1 Score: 144 bits (362), Expect = 4.540e-41
Identity = 67/115 (58.26%), Postives = 88/115 (76.52%), Query Frame = 2 
Query:   71 MEVEDRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRGALR 415
            ME E+RY GR G FESVD     GP +SVEGWI FV  ++EEA E+D+ DKFS+FG +KNL + LDRRTGFVKGY LVE+E ++EAQ AI+EM+G++ +EQ ++V WAF +G  +
Sbjct:   58 MEAEERYSGRAGQFESVDNEGGKGPAKSVEGWICFVTGINEEANEEDVYDKFSDFGEIKNLQLPLDRRTGFVKGYALVEYELRKEAQAAIEEMNGAEFMEQTLTVDWAFTKGPFK 172
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: A0A0G4H5U6_9ALVE (RRM domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H5U6_9ALVE)

HSP 1 Score: 142 bits (359), Expect = 5.280e-41
Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = 2 
Query:   50 GGHQNGSMEVED--RYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVR 403
            GG   G  ++ D  RYEG+GGVFES+    +G   +SVEGWI+ VR +HEEAQEDDI D FS +G +KNLH+NLDRRTGFVKGY L+E+E+ +EAQ AI  M+G +LL Q + V WAFVR
Sbjct:   26 GGRGGGDADMTDVERYEGQGGVFESLSHDASGTAAKSVEGWIVIVRGLHEEAQEDDIHDSFSGYGEIKNLHLNLDRRTGFVKGYALIEYEQFDEAQAAIHAMNGKELLSQPVHVDWAFVR 145
[Close]
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Match: B3RRM4_TRIAD (RNA-binding protein 8A n=2 Tax=Trichoplax TaxID=10227 RepID=B3RRM4_TRIAD)

HSP 1 Score: 142 bits (359), Expect = 9.340e-41
Identity = 68/101 (67.33%), Postives = 83/101 (82.18%), Query Frame = 2 
Query:  110 FESVDVGP--TGGPQRSVEGWILFVRNVHEEAQEDDIMDKFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLEQDISVTWAFVRG 406
            +ES+DV      GPQRSVEGWI+FV N+HEEAQEDD+ +KF+E+G VKNLH+NLDRRTGF+KGY LVEFE K+EAQ AID ++G+ LLEQ I V W FV+G
Sbjct:   54 YESMDVDGDYATGPQRSVEGWIVFVANIHEEAQEDDVYEKFAEYGDVKNLHLNLDRRTGFIKGYALVEFETKKEAQAAIDNLNGTNLLEQTIKVDWCFVKG 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1226.1683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSN1_9PHAE1.970e-7392.50RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2G621_9STRA2.910e-5069.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2DBP5_9STRA8.850e-4765.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3GV69_9STRA1.370e-4564.41Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2S198_9STRA1.230e-4359.38Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S0E2Z3_9CRYP1.980e-4260.71Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0WPK5_9CHLO1.630e-4157.76Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A6U2CUA9_HEMAN4.540e-4158.26Hypothetical protein n=3 Tax=Hemiselmis TaxID=7792... [more]
A0A0G4H5U6_9ALVE5.280e-4159.17RRM domain-containing protein n=1 Tax=Chromera vel... [more]
B3RRM4_TRIAD9.340e-4167.33RNA-binding protein 8A n=2 Tax=Trichoplax TaxID=10... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1226contigP-lacustris_contig1226:11846..15335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score219.2
Seed ortholog evalue1e-54
Seed eggNOG ortholog2880.D7FPG0
Preferred nameRBM8A
KEGG koko:K03037,ko:K12876
KEGG Pathwayko03013,ko03015,ko03040,ko03050,ko05169,map03013,map03015,map03040,map03050,map05169
KEGG ModuleM00341,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000184,GO:0000226,GO:0000335,GO:0000337,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0000578,GO:0000956,GO:0001709,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007294,GO:0007308,GO:0007309,GO:0007310,GO:0007314,GO:0007315,GO:0007316,GO:0007317,GO:0007350,GO:0007351,GO:0007389,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0008358,GO:0008380,GO:0008595,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009892,GO:0009893,GO:0009948,GO:0009950,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010467,GO:0010468,GO:0010528,GO:0010529,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019094,GO:0019219,GO:0019222,GO:0019439,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030425,GO:0030706,GO:0030716,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035282,GO:0036477,GO:0038127,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044703,GO:0045165,GO:0045184,GO:0045292,GO:0045451,GO:0045595,GO:0045910,GO:0045934,GO:0045995,GO:0046483,GO:0046595,GO:0046700,GO:0046907,GO:0048024,GO:0048468,GO:0048469,GO:0048477,GO:0048518,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050684,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051053,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051252,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051663,GO:0051704,GO:0051716,GO:0060255,GO:0060281,GO:0060284,GO:0060341,GO:0060810,GO:0060811,GO:0065007,GO:0070013,GO:0070727,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902875,GO:1903311,GO:1903429,GO:1904580,GO:1905879,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.establishment of pole plasm mRNA localization
EggNOG OGsKOG0130@1,KOG0130@2759
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-14_004800.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041,ko03051
Exons3
Model size415
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1226.1683.1prot_P-lacustris_contig1226.1683.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1226 11916..15335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.692335-UTR-P-lacustris_contig1226:11845..119151622815543.692335-UTR-P-lacustris_contig1226:11845..11915Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1226 11846..11915 +
1693493600.815102-UTR-P-lacustris_contig1226:11845..119151693493600.815102-UTR-P-lacustris_contig1226:11845..11915Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1226 11846..11915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.7021992-CDS-P-lacustris_contig1226:11915..119321622815543.7021992-CDS-P-lacustris_contig1226:11915..11932Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1226 11916..11932 +
1693493600.8296723-CDS-P-lacustris_contig1226:11915..119321693493600.8296723-CDS-P-lacustris_contig1226:11915..11932Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1226 11916..11932 +
1622815543.7132273-CDS-P-lacustris_contig1226:14329..145311622815543.7132273-CDS-P-lacustris_contig1226:14329..14531Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1226 14330..14531 +
1693493600.8374674-CDS-P-lacustris_contig1226:14329..145311693493600.8374674-CDS-P-lacustris_contig1226:14329..14531Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1226 14330..14531 +
1622815543.725236-CDS-P-lacustris_contig1226:15209..153351622815543.725236-CDS-P-lacustris_contig1226:15209..15335Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1226 15210..15335 +
1693493600.8450074-CDS-P-lacustris_contig1226:15209..153351693493600.8450074-CDS-P-lacustris_contig1226:15209..15335Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1226 15210..15335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1226.1683.1

>prot_P-lacustris_contig1226.1683.1 ID=prot_P-lacustris_contig1226.1683.1|Name=mRNA_P-lacustris_contig1226.1683.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=115bp
MEVEDRYEGRGGVFESVDVGPTGGPQRSVEGWILFVRNVHEEAQEDDIMD
KFSEFGAVKNLHVNLDRRTGFVKGYCLVEFEKKEEAQLAIDEMDGSQLLE
QDISVTWAFVRGALR
back to top

mRNA from alignment at P-lacustris_contig1226:11846..15335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1226.1683.1 ID=mRNA_P-lacustris_contig1226.1683.1|Name=mRNA_P-lacustris_contig1226.1683.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3490bp|location=Sequence derived from alignment at P-lacustris_contig1226:11846..15335+ (Pleurocladia lacustris SAG_25_93)
GCGCGGCAGTCGCGAAAGCCGGCAAGGGAAGGAAAGGCGGCGCTAAGGGG
GGGGGCACCAGAACGGGTCGATGGAAGTGGAAGACAGGTTAGCTATTAGC
TACGGCTACGAATACGACAGCGAAACAGGCCAACTTCAGCGGTGCTGATT
GAGCAGCAAAAACGAGCGAGAGAGACACTACCCGACCAAATCCTGCGTTT
CAGGTTTCCCAGGCCTATCACGGACGCGTTCCGACCGCTTGTTTTCCGAA
CAGAAAGGCTTGCTCCAGCCTCCCGTTGCACGTAAAGCCTACCAGAGCGT
TGTTTGGGCCCAGCAAAGAACATACTGTAACACAAGCTCAGACCCACAGA
CGACTATACGGGCCGATGATGGAGGCGCTCCCCAACAAGGGTAAATGGTT
GCGTTCTCCCGTGTCAGTCAAACCCTGTTAAAGCGATGTTTTTGGCCTAG
CGTTACCAGGGTCCTACGTAATGCCGAGCGTATCCAAACCTCCACCCGAC
CGAAATCGTAACTGAAACTGGTCGGTGACGGAAGCGTTCTGACGGACACT
TTCTAAAATAGATTGTTCAGTTCCAGGAAACACAAGCATTAGTTAGCGTC
GCGCAGTCTAGCGAGGGTGGCCGGTTCGGAAAGACCTCCCTCCACTCGAG
AGGTTCTCGAAAACATGCCCTTCGAGGGTTCGCAGCTCCGCCCCCCCCAT
GAGCCGAGCCAATGGGCGTACAGAAGAACGAGAAATATTGCCGCAATGAA
TGGCTCAACGGTTCGTTTGGTTGTTTCATTTGTGCAGCCGGCTGGGCACG
TTGGCTTTCGGGGCGCAAGGATTGAACCGGGGAGAGGAGCCGTGTACGTC
TAGGTTGTGTGTCGTTAGCTTCGATCGCGTTGTCCGCCTGACGAATGAAA
ATAATCGGGTGTGGTTGATGTGGTAGATGTGGTAGACAACGGACCAAGAT
CCGCAGATGCGCTGCAGCTATTCCGTCAGGGGTGTGTCTACGTGCGGGTG
CATGCGGTTGCGCGCATTTGTGTACATATTCTTTTGATGTGTGTCCTTTC
TTCTGCATATATGTCATCATGTCTAACTGTGTCTGCGTTATTGGAACCAT
GCATGCTCGGTTCCTGCATGTCGTAGCCGCTTCCCTATCTTGGACGAAAC
TAAACCGCGGACACGCTCTCCTCATGTCCTTGTCTCCTCTCCTCATCTTC
GTCTTGTGGATGTGATATGCGTCCACACAGACAGACAAGGTTGAGGGTGG
GGCCTAACCTCGAAAAAAAAAATTGGAACATGGAACTTGGCACGTATTCC
AAGTTCCATGTTTGTGTATGTTTGTGTCTTAACCTTCGTGCGTAAACATG
GAAAATGGAACGGGTACGCAGAACGTTTCAAGCGCGCGCGCAGAGACTGA
GGAAAAAAAAGCCCAACGTGCACGGCCAGAAGGGATGGTGACCCCTTTCG
GTGGATACCGTTGACGAGTGAACACTGTCTTCATATGCTAGGCATCAGGT
AGAACAGGCGGTGCTCGTCGTGCTTTCCGCATCCTCGAGAGTGCTCTGGA
CGTGTTGCTTCGTCTGTTGCAGTCAAAGAAAAGGCGCCGGAATATTTTCG
CACACCTCCCATTCGAAAACAAGCGCTACACCGGCATCTGTGGCGCCGTT
TTTAGTGCTCGCGAAGCACCTGATGATGGCAATACAGGTGACGCCTCAAT
CGGTAGCCGACAACACGTGTGGCATGGATATGCCCAAGTGTTTACGTACA
TCCGTTCACACATCTTGAATCAGAACAGTTTCAGACACGTTCGCGCCGTT
TGAACACCGATGAGCCCGTTCTAAGTGGGCTGTTGAACTATTTTAAGGAA
CTCGTTCCTTAAAATAATCCATGCGGCGGGATCAATAAAAGTTGGAACCT
AGGTGGCTGCAATTATTTCCAGGATTTTTTTTTTGTGTGCAATTGTTTCC
AGGAATTTGTTTTGGTGTAGCTGGCCAATCAGAGGGGGGAATTTTACGTT
CCAAGTTCCATGTTCCAATTTTACTTTTTAGGTCAAGCCCCACCCTGATG
TCCTAGTTAAATAGCGTCCACAGAAGTACGGCAGTTACAGACTAGAGAGC
ACGCGGCCTGATACAGATTTTCGCAACAACAAAAGTGACCCTATATACGG
ACGGTGCACAAATCGCGCTAGACGAGCGGCCGGCGTTGAGAGCGATCGTT
TTGGCGACCTGAGACGGTCTGAAAACCACGGCGTCCTCGGTTCGAATACC
GCAACAACTAGCTGCGTATCCCCTGCAAATGTGGCACGTGCTTCGCGTAA
GCAACCAACGCTCTTGCGGCGGTCAGTTCGATTGTGTAGGTCGTTCTACC
ATCCGAGATTGCACAAAGGACCCAAAACACACCCGAGAGCCACACCTGGC
GATCGTGTGCTGCTGTCTCTTGGTACCTAGATAAAACAAAGCATTGAGCC
GTCAACTCGTTGTACTCTCGTGAACTGCGATCAGATACGAGGGCCGCGGA
GGCGTGTTCGAGTCCGTGGACGTGGGTCCCACCGGCGGGCCCCAGCGCAG
CGTGGAGGGCTGGATCCTTTTCGTGCGCAATGTGCACGAGGAGGCCCAGG
AGGACGATATCATGGACAAGTTCTCCGAGTTCGGAGCGGTCAAGAATCTT
CACGTCAATCTCGACAGGCGCACGGGTTTCGTCAAAGTACGTATATGTAC
ATTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGCTGC
TGCTTCGGTAATGTTGTTGTCTATTGTTCTCCAAGTCAGCACATGTCACA
CACGGACCCAGCCCGAGGCCGAGAGTGTGCGCGAGTCCGTGAGCCTAAGG
GATGGGGACGGGCTTATGCATGCGCTGGCGGGCGTGGCCGGCGAAGCGTA
GCCGCCTCTACTGCCTCGCCTTGCCCGTCCGGGTTGACGAAGGAGGGAGG
TGCCCCGTGGTTATCGTCATACCATGATCGAGTTTTGGCCGCGGCGCTGC
TGGGTGTTTTGAGTCTCGATTCAAGTCGAGCGCGGAGTGACGGACGGCTC
ATCGCATGTCGCGTTCGTGGTCGTTCTCATGGCATCCCTTTTTTTCCTCT
CTCTTCCTCCCTTCGCCTCCGTGGTGTGCGTGGCCGTCGAGAAAACTCGT
TCTTGTTCCCATGCGCGCACGCACACTTGCACACACATACAGTCCCGCGA
AGACTGAGGGCTTGTCATCTAGTCGGCCGGTTAGCGCGGTCGATGCTCAT
CGCTGAGACACACTCGCAATGGGGTGCTGCGCGCCCGTTGGATCCTGTCG
ATGCACAACTTTCTGAAACGCGTGCGGGTGTGCTGCGCTGCGCTGTCCTG
GTGTGTCGAAACAGGGGTATTGTTTGGTGGAGTTTGAGAAAAAGGAGGAG
GCGCAGTTGGCCATCGACGAGATGGACGGGTCACAGCTTCTGGAGCAAGA
TATTTCCGTCACCTGGGCGTTCGTGAGGGGTGCGTTACGC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig1226:11846..15335+

>mRNA_P-lacustris_contig1226.1683.1 ID=mRNA_P-lacustris_contig1226.1683.1|Name=mRNA_P-lacustris_contig1226.1683.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=690bp|location=Sequence derived from alignment at P-lacustris_contig1226:11846..15335+ (Pleurocladia lacustris SAG_25_93)
ATGGAAGTGGAAGACAGATGGAAGTGGAAGACAGATACGAGGGCCGCGGA
GGCGTGTTCGAGTCCGTGGACGTGGGTCCCACCGGCGGGCCCCAGCGCAG
CGTGGAGGGCTGGATCCTTTTCGTGCGCAATGTGCACGAGGAGGCCCAGG
AGGACGATATCATGGACAAGTTCTCCGAGTTCGGAGCGGTCAAGAATCTT
CACGTCAATCTCGACAGGCGCACGGGTTTCGTCAAAATACGAGGGCCGCG
GAGGCGTGTTCGAGTCCGTGGACGTGGGTCCCACCGGCGGGCCCCAGCGC
AGCGTGGAGGGCTGGATCCTTTTCGTGCGCAATGTGCACGAGGAGGCCCA
GGAGGACGATATCATGGACAAGTTCTCCGAGTTCGGAGCGGTCAAGAATC
TTCACGTCAATCTCGACAGGCGCACGGGTTTCGTCAAAGGGTATTGTTTG
GTGGAGTTTGAGAAAAAGGAGGAGGCGCAGTTGGCCATCGACGAGATGGA
CGGGTCACAGCTTCTGGAGCAAGATATTTCCGTCACCTGGGCGTTCGTGA
GGGGTGCGTTACGCGGGTATTGTTTGGTGGAGTTTGAGAAAAAGGAGGAG
GCGCAGTTGGCCATCGACGAGATGGACGGGTCACAGCTTCTGGAGCAAGA
TATTTCCGTCACCTGGGCGTTCGTGAGGGGTGCGTTACGC
back to top