mRNA_P-lacustris_contig120.1525.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig120.1525.1
Unique NamemRNA_P-lacustris_contig120.1525.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: A0A6H5L4Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y5_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 7.930e-105
Identity = 171/213 (80.28%), Postives = 188/213 (88.26%), Query Frame = 1 
Query:  229 RKAAPTREGASTRISAGTAMTTK-EDFESYDGGDYTIFIGRGMERFRRGEVEDSVSDFDRAIRLQPRLSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSYAKSG 864
            R+  P +   S+  SA TAMTT  EDFE+YDGGDY IF+GRGMERFRRGEV  SVSDFDRAI LQPRL AYMWQRGISLYYA+QFEEGS+QFR DVALNPNDTEEAIWTF+CE+R+PS+GFATAKQRLVKISNERRPYMRAAYSLFKGDA ESDLAKQM EVS G+  G AGSGAPYFY NLYLGLY+EAKG+DVLARKY++AAV+S YAKSG
Sbjct:   43 RQLQPVQAITSSSTSALTAMTTTHEDFEAYDGGDYKIFVGRGMERFRRGEVAGSVSDFDRAISLQPRLEAYMWQRGISLYYADQFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQM-EVSLGS-NGVAGSGAPYFYVNLYLGLYSEAKGDDVLARKYISAAVRSPYAKSG 253
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: D8LR87_ECTSI (Binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR87_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 6.910e-102
Identity = 161/192 (83.85%), Postives = 177/192 (92.19%), Query Frame = 1 
Query:  289 TTKEDFESYDGGDYTIFIGRGMERFRRGEVEDSVSDFDRAIRLQPRLSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSYAKSG 864
            TT EDFE+YDGGDY IF+GRGMERFRRGEV  SVSDFDRAI LQPRL AYMWQRGISLYYA++FEEGS+QFR DVALNPNDTEEAIWTF+CE+R+PS+GFATAKQRLVKISNERRPYMRAAYSLFKGDA ESDLAKQM E S G+  G AGSGAPYFYANLYLGLY+EAKG+DVLARKY++AAV+S Y+KSG
Sbjct:    3 TTHEDFETYDGGDYKIFVGRGMERFRRGEVAGSVSDFDRAISLQPRLEAYMWQRGISLYYADRFEEGSRQFRKDVALNPNDTEEAIWTFMCESRIPSVGFATAKQRLVKISNERRPYMRAAYSLFKGDASESDLAKQM-EGSLGS-NGAAGSGAPYFYANLYLGLYSEAKGDDVLARKYISAAVRSPYSKSG 192
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: A0A835ZJI4_9STRA (Binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJI4_9STRA)

HSP 1 Score: 196 bits (497), Expect = 2.310e-54
Identity = 102/197 (51.78%), Postives = 135/197 (68.53%), Query Frame = 1 
Query:  274 AGTAMTTKEDFESYDGGDYTIFIGRGMERFRRGEVEDSVSDFDRAIRLQPRLSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSYAKSG 864
            A  A   + D E+Y G +  ++I RGMERFR+ +V++S+SDFDRA++L P L  Y+WQRG+SLYYA++F EG+ QFR DV++NPNDTEEAIW F CEAR  ++GF  A++RL+K+  + RPYMR AYSLF+G   E DLA        G  +  +     +FYANLYLGLYAE + E  LAR Y+  AV S Y  +G
Sbjct:    2 ATRAAPQQFDPETYTGSNPKVYIVRGMERFRKAKVQESISDFDRALQLSPALGPYLWQRGLSLYYADRFAEGAAQFRLDVSVNPNDTEEAIWAFACEAR--TLGFQEARKRLLKVGQDTRPYMRTAYSLFQGSTSEQDLAMV------GQTDDRS-----HFYANLYLGLYAECREEVDLARHYIGLAVGSKYCATG 185
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: A0A7S1JEY7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JEY7_9EUGL)

HSP 1 Score: 193 bits (490), Expect = 1.440e-51
Identity = 93/172 (54.07%), Postives = 122/172 (70.93%), Query Frame = 1 
Query:  349 GMERFRRGEVEDSVSDFDRAIRLQPRLSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSYAKSG 864
            GM++F +G+V+ S+ DFDR I   PR+  YMWQRG+SLYYA + +EGS+QFR DVA+NPNDTEEAIW FLCEAR PSIGF  A+  ++++  + RPYMRAAY LF+G   E  L +  ++            G   FY+NLYLGLYAEAKG+ V A++Y++AAV S Y +SG
Sbjct:  167 GMQKFTKGDVQGSIEDFDRIIAGAPRMEPYMWQRGLSLYYAEELQEGSRQFRRDVAVNPNDTEEAIWAFLCEARDPSIGFEKARTNMLQVGRDSRPYMRAAYDLFRGTGTEEGLKQAAVD------------GPSEFYSNLYLGLYAEAKGDSVAAQQYISAAVNSPYRRSG 326
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: A0A7S2B9N6_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9N6_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.530e-44
Identity = 91/178 (51.12%), Postives = 114/178 (64.04%), Query Frame = 1 
Query:  325 DYTIFIGRGMERFRRGEVEDSVSDFDRAIRLQPRLSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSYAK 858
            D  I   RGM+ FR+G+V  S+  FD AI    R + Y+WQRG+SLYYA +FEEG+ QFR DVA NPNDTEEAIWTFLCEA+    GF  A+++++K+  + RP MR    LF GDA E DLA    +  PG+           FYA LYLGLY EAKG+ V A+ Y+  AV S+Y K
Sbjct:   68 DPRIATSRGMQAFRKGDVAGSLEQFDAAIAADERYTLYLWQRGLSLYYAGKFEEGAVQFRRDVAANPNDTEEAIWTFLCEAQTN--GFEAARKQMLKVGKDSRPIMRMVNELFLGDASEEDLATAGHKAGPGS--------RAEFYALLYLGLYNEAKGDAVHAKGYIQQAVSSAYGK 235
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: A0A7S4C893_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C893_9EUGL)

HSP 1 Score: 165 bits (417), Expect = 5.330e-44
Identity = 82/146 (56.16%), Postives = 104/146 (71.23%), Query Frame = 1 
Query:  427 LSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSYAKSG 864
            ++ YMWQRG+SLYYA   EEGS QFR DVA+NPNDTEEAIW FLCEAR PSIGFA A+Q ++++  + RPYMRAAY+LF+G   E+DL     +V            A  FY++LYLGLYAEA+G+   A++Y++AA  S YA SG
Sbjct:    1 MAPYMWQRGLSLYYAEALEEGSAQFRGDVAVNPNDTEEAIWAFLCEARDPSIGFAAARQNILRVGRDSRPYMRAAYNLFQGTGTEADLEAAGRDV------------ASRFYSDLYLGLYAEARGDAATAQRYISAAANSPYAISG 134
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: W7U3Q5_9STRA (Tetratricopeptide TPR2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3Q5_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.190e-42
Identity = 94/195 (48.21%), Postives = 121/195 (62.05%), Query Frame = 1 
Query:  334 IFIGRGMERFRRGEVEDSVSDFDRAIRLQ-PRLSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSYAKSGTT----CATSHAYIRKY 903
            + +  GME FRRG+VE S+  FD A+ L   +L  Y+WQRG+SLYYA ++ EG++QFR DVA+NP DTEEAIW FLCEA+V   GF  A+++++ +  + RPYMR AY LFKG   E DLAK          EG   S    FYA LYLGLYAEA+ E   AR Y+ A+V + Y  +        A  H  IRK+
Sbjct:   81 VLVSEGMELFRRGDVEGSIMYFDEALLLGGAQLEPYLWQRGLSLYYAGRYREGAEQFRKDVAVNPADTEEAIWAFLCEAQVD--GFEEARRKMLIVQTDPRPYMRRAYELFKGTCSEEDLAK----------EGANLSSPAAFYALLYLGLYAEARDEADKARNYIHASVATPYGNANRDYMAGLARVHLIIRKW 263
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: A0A803KNX0_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KNX0_CHEQI)

HSP 1 Score: 163 bits (413), Expect = 9.140e-42
Identity = 85/174 (48.85%), Postives = 111/174 (63.79%), Query Frame = 1 
Query:  334 IFIGRGMERFRRGEVEDSVSDFDRAIRLQPRLSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSYA 855
            + I RGM+ FR+G+V  SV +FDRAI L PR  AY+WQRG+SLYY ++FEEG++QFR DVA NPNDTEE+IW FLCEAR+   G   A++R +++  + RP MR  Y +FK       L         G           YFYA+LY GLY EA GE+  A+KY+ A+ +S YA
Sbjct:   81 LAIRRGMQLFRQGDVMGSVVEFDRAIELDPRQKAYLWQRGLSLYYLDRFEEGAEQFRLDVAQNPNDTEESIWCFLCEARL--YGVDEARKRYLEVGRDPRPVMRQVYDMFKDGGDPQKLVDTFSNSRDGE----------YFYASLYAGLYHEALGEEDAAKKYIVASCQSPYA 242
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: A0A836BA97_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BA97_9CHLO)

HSP 1 Score: 164 bits (414), Expect = 1.210e-41
Identity = 88/201 (43.78%), Postives = 120/201 (59.70%), Query Frame = 1 
Query:  256 ASTRISAGTAMTTKEDFESYDGGDYTIFIGRGMERFRRGEVEDSVSDFDRAIRLQPRLSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSYAK 858
            A    + G A+          GGD       GM++FRR EVE SV DFDR I+L P +  YMWQRG+SLYY  +F EG++QFR DVA+NPNDTEE+IWTFLCEA++  +G   A+++ +++  + RP MRAAY  FK       +  Q+          T   G   FY  LY+GL+ EA+G+   A+K +TAAV + YA+
Sbjct:   67 AGALAAGGVALAASLGGLGAGGGDPRTLTRSGMDKFRRNEVEASVDDFDRVIQLAPSMKPYMWQRGLSLYYLGRFAEGAEQFRIDVAVNPNDTEESIWTFLCEAQM--VGAEQARKQFLEVGRDSRPVMRAAYECFKTGQPPEKIMAQV----------TDNGGHDTFYGLLYVGLWHEAEGDTAEAQKAITAAVATPYAR 255
[Close]
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Match: A0A7S0D5P5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D5P5_MICPS)

HSP 1 Score: 160 bits (405), Expect = 2.510e-41
Identity = 84/174 (48.28%), Postives = 107/174 (61.49%), Query Frame = 1 
Query:  331 TIFIGRGMERFRRGEVEDSVSDFDRAIRLQPRLSAYMWQRGISLYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRLVKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYFYANLYLGLYAEAKGEDVLARKYVTAAVKSSY 852
            ++   RGM +F +G+V+ S++DFD  I   P  + YMWQRG+SLYYA +  EGS QFR DVA+NPNDTEEA+W FLCEAR   IGF  A++ L+ +  + R YMRAAY+LF G   E  L                G  A  FY  LYLGLY EAKG++  A+  V AAV + Y
Sbjct:   30 SLLTRRGMAKFTQGDVDGSIADFDAVIAAAPGRAPYMWQRGLSLYYAERLREGSAQFRRDVAVNPNDTEEAVWAFLCEARDKDIGFEKAREDLLVVGRDPRAYMRAAYALFAGTGDEDSL----------RAVAANGGAAEDFYTWLYLGLYREAKGDENGAKAAVLAAVATPY 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig120.1525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Y5_9PHAE7.930e-10580.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR87_ECTSI6.910e-10283.85Binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A835ZJI4_9STRA2.310e-5451.78Binding protein n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S1JEY7_9EUGL1.440e-5154.07Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2B9N6_9STRA1.530e-4451.12Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A7S4C893_9EUGL5.330e-4456.16Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
W7U3Q5_9STRA1.190e-4248.21Tetratricopeptide TPR2 n=1 Tax=Nannochloropsis gad... [more]
A0A803KNX0_CHEQI9.140e-4248.85Uncharacterized protein n=2 Tax=Chenopodium quinoa... [more]
A0A836BA97_9CHLO1.210e-4143.78Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A7S0D5P5_MICPS2.510e-4148.28Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig120contigP-lacustris_contig120:149491..155624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.5
Seed ortholog evalue2.8e-86
Seed eggNOG ortholog2880.D8LR87
Hectar predicted targeting categorysignal anchor
EggNOG OGs28IPX@1,2QR10@2759
Ec32 ortholog descriptionTetratricopeptide repeat-containing domain protein
Ec32 orthologEc-06_003480.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2351
Cds size948
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig120.1525.1prot_P-lacustris_contig120.1525.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig120 149500..154230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.4885905-UTR-P-lacustris_contig120:149490..1494991622815521.4885905-UTR-P-lacustris_contig120:149490..149499Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig120 149491..149499 +
1693493587.1035364-UTR-P-lacustris_contig120:149490..1494991693493587.1035364-UTR-P-lacustris_contig120:149490..149499Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig120 149491..149499 +
1622815521.5889707-UTR-P-lacustris_contig120:154230..1556241622815521.5889707-UTR-P-lacustris_contig120:154230..155624Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig120 154231..155624 +
1693493587.1822078-UTR-P-lacustris_contig120:154230..1556241693493587.1822078-UTR-P-lacustris_contig120:154230..155624Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig120 154231..155624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815521.5292664-CDS-P-lacustris_contig120:149499..1498381622815521.5292664-CDS-P-lacustris_contig120:149499..149838Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 149500..149838 +
1693493587.113431-CDS-P-lacustris_contig120:149499..1498381693493587.113431-CDS-P-lacustris_contig120:149499..149838Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 149500..149838 +
1622815521.5394907-CDS-P-lacustris_contig120:150175..1502961622815521.5394907-CDS-P-lacustris_contig120:150175..150296Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 150176..150296 +
1693493587.122986-CDS-P-lacustris_contig120:150175..1502961693493587.122986-CDS-P-lacustris_contig120:150175..150296Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 150176..150296 +
1622815521.5489917-CDS-P-lacustris_contig120:151840..1518831622815521.5489917-CDS-P-lacustris_contig120:151840..151883Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 151841..151883 +
1693493587.137281-CDS-P-lacustris_contig120:151840..1518831693493587.137281-CDS-P-lacustris_contig120:151840..151883Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 151841..151883 +
1622815521.5604331-CDS-P-lacustris_contig120:152405..1525161622815521.5604331-CDS-P-lacustris_contig120:152405..152516Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 152406..152516 +
1693493587.14807-CDS-P-lacustris_contig120:152405..1525161693493587.14807-CDS-P-lacustris_contig120:152405..152516Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 152406..152516 +
1622815521.5702364-CDS-P-lacustris_contig120:152921..1531211622815521.5702364-CDS-P-lacustris_contig120:152921..153121Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 152922..153121 +
1693493587.1575558-CDS-P-lacustris_contig120:152921..1531211693493587.1575558-CDS-P-lacustris_contig120:152921..153121Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 152922..153121 +
1622815521.5799494-CDS-P-lacustris_contig120:154096..1542301622815521.5799494-CDS-P-lacustris_contig120:154096..154230Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 154097..154230 +
1693493587.1681197-CDS-P-lacustris_contig120:154096..1542301693493587.1681197-CDS-P-lacustris_contig120:154096..154230Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig120 154097..154230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig120.1525.1

>prot_P-lacustris_contig120.1525.1 ID=prot_P-lacustris_contig120.1525.1|Name=mRNA_P-lacustris_contig120.1525.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=316bp
MNQLHMAVHSSPASTSIFARNIFRFLSRSLSRYHGQPQDLMPHVSRVALL
LSPLFLGCCCAFVVKPLYLARRVRKAAPTREGASTRISAGTAMTTKEDFE
SYDGGDYTIFIGRGMERFRRGEVEDSVSDFDRAIRLQPRLSAYMWQRGIS
LYYANQFEEGSKQFRADVALNPNDTEEAIWTFLCEARVPSIGFATAKQRL
VKISNERRPYMRAAYSLFKGDAKESDLAKQMMEVSPGNVEGTAGSGAPYF
YANLYLGLYAEAKGEDVLARKYVTAAVKSSYAKSGTTCATSHAYIRKYEG
GKSSELVNLPACQHR*
back to top

mRNA from alignment at P-lacustris_contig120:149491..155624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig120.1525.1 ID=mRNA_P-lacustris_contig120.1525.1|Name=mRNA_P-lacustris_contig120.1525.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6134bp|location=Sequence derived from alignment at P-lacustris_contig120:149491..155624+ (Pleurocladia lacustris SAG_25_93)
GCCCTCCACATGAATCAGCTCCACATGGCTGTACACTCCTCACCTGCTTC
AACTTCCATTTTTGCCAGGAACATCTTTCGCTTTCTCTCTCGCTCTCTCT
CGCGATATCACGGCCAACCCCAAGATTTGATGCCCCACGTGTCTCGTGTA
GCACTCCTTCTCTCGCCGCTGTTCCTAGGCTGCTGCTGTGCATTTGTGGT
GAAGCCGCTTTATCTCGCCAGACGAGTGCGCAAAGCAGCACCCACCAGGG
AAGGCGCAAGCACCAGGATCTCCGCCGGGACGGCCATGACTACCAAGGAG
GACTTCGAGAGCTACGATGGTGGAGACTACACGATTTTTATTGGAAGGGT
GAGATGTCCCCTCTGTGTGGTAAATACGTAGGCACCTTCGACCGATATTT
TCACATGCTGCTTGCGTTTGTCCGCCAGAAAAGAGATCTACAAAATCTCC
ACTCGTTGCATCTTTGTGAAGTCGTAGGACGGTCTCGCTACGAGGTTGGT
CTCGCTACGTCACTGCTGTTGGCTGCTGTGTTGTTCACGGCTGCCCCGTT
GTGTGCTACGGGCACATTCGCCTACCGTGCAACACCTGACGATAATTTCC
GCTCTCAATGGCACACGACCACATACATACCAGCGATCACGCTTCTTCTC
GAACAATGAATTCTCGTTGCGCTTCAAAACCACAGGGAATGGAGAGATTT
AGGCGTGGGGAGGTGGAGGACTCTGTGAGCGATTTCGATCGTGCCATCCG
CCTTCAGCCCCGCTTATCGGCATACATGTGGCAGAGGGGTATCAGCTTGT
ACTATGGTGAGCCACCAAACTTCCAGCCTTGCTTTTCATGATCTCCGGGG
AAAATTCCTGCGGCCCCTCCACCGCTCCCTTACCCCACGCTCCCCAGTAC
GACCAGGACCAGAATTTGCGAGGCTTTCGAGCTCCGCTTGTGCCCATGGT
ATCCAACGCGCAAACTAGAGTGTCAAGTTTAGGTGGGTGACTGCTGTTTG
GACCCTCGTTGCGCTTTGGATTCTTTAGTCGAAGATCCATCGACAAACAT
CGTGTGGTTTGGTGTTTGGTGGTTGCATTCGAAATGGCTGTCTTTTTTTT
TGTGTCGGGCGTGTCAATTTTTCATGTCTGCAATCTGCATGCATGTTTTG
AGAACAATTTTCAGCATCGTCCGTCGCGGTTTGCCTGGGGTTATGACAAC
CAGTTAGAATGTCCGCGACATGTATGACTCAACCACACAACGCCTTCAAC
TCGAGAGGTCAAAGCCTTCTGCCAAGAAGTCCGGATAAAGCATTGATCGG
TAGGGTTAGCATGAGCAACGTTGTGCACGACATATTTTTTTTTCATTATT
TACCACCTCATTTGCCACTTCTTGCATGTATGTAGGGCTAGTACGAGTTA
GTTACTCGGAGTATAGGGTAGATCTCAACGGCGACATCAAATGCCCAACT
TCGTTTCTTTGCGATATGCACATATGCACAGCAGTAGTAGGTGAGAACGA
GGACGCGGAGGTGCGTAAAAATTGATTCCAAGACCGAATGTTTTGTCATG
AGCACGAAAAAGCGAAAAAGCACGATACATTTTCATCATCCACAGCAGCA
CTAGTATCATCCAAGGGTTGGAAAATACGGGACGCAACGACCCGAGTAGC
TTGCGCCCTCTCGTACAGTTGGGGCCCGGCGATAAGAAACGCAACAATCG
GGTTGAGGCTCAAAGTCGTATTTCTGGAGCAAGCACCAGCATACGTCAAA
ATTTTCTTATATCGAGTTTCTTTTATTTTCTGGCTATTGGATCCCACTGA
TTTTCTTAAATGACCCTTTTTCATTGTGTATACACCCATTTTAATGGGAA
CGGGATTTATTTTCGTCGAATCTTGTCACGTTTCGCCGCTTTTCGGTCTT
CGGGAAAAGTCAACCAGTTCATGGATGTGTCCACAGATCACCTATTTGCT
AGGCATGGGTCTGCGTTTGAATTTTTCCAGCGGAACAAGATTCTCCCAAG
TCGCGAAGATTTGCTTGAAAAGTGGTCAACATTCGATTCGATGCGTGCAT
CGTCTTCGTACTCTCATCTGTTTTTTTTTCGTCTTTCGTGTTCTCGTCCT
CCGTTGTTTCGCCGCCGCTGTGACCGTCCGACGTCCTACGTTTGCTTGCT
ACGATTGTTGTTGTTTGTCGTTCCTTCCGATCATCACCACCATCATGACG
TGATCGCTGTGCCGCATCAACGTTGGTCTTCGCTTCCTTCCAATCGTTAC
CAACGGCGCGGCAACTACGTGTTGTGGCGATGTGGGGTCGGGCACAATCG
ATGTCGATCGTCGCTGGACGGCGTATTCGCTTCAAAATTTCCCTCAACAG
CCAATCAGTTCGAAGAGGGATCCAAGCAATTTCGGGCAGACGTGTGAGTA
CAGCGATAGATAGTACAGGAAAGCCGAGAGGTGATGAAAGTCGATTATCG
TCGTTGATCGCCAAAAGAACAAGGCAAAACTGCTCGGATTTCGTGGTGTG
TGCGATGGGAAAAATGCGTTGCGAACGAACTTCGTCGCTGTCGCGCCACC
CGTCATACTCGTACTCGACTGCTGTGACAGGAAGTTCAAAGTGGAAACTA
AATCGTCGAAAATCGCGTTTTGGGATTTTGTTTCCCCATTTTGTTCTGGC
GCGTCCGTTGATTCGATCGGTGCATGCCATGCTGTCTGTAGCTGCGCGCA
GTATGGTTGGCCTGAAGCTTCGAAACGCCTCCCTCACGCAATCGTGTGAA
GGGGCCATCTAGCGCACCCTTCGTACGTTAATCACTCAATGCGCAATTTT
TACTTTTAAATGAAGAATTCCCACGTGGGTCCTTCATCTCGAACAATTGT
TCTCGACCCCGGCCTGCACACTGTAGATCATATAGATCATCTCCCAATCC
TTCGCGTTTGCGCAGGGCGTTAAATCCCAACGATACGGAAGAAGCGATCT
GGACGTTCTTGTGCGAGGCGAGAGTCCCAAGTATCGGATTCGCCACCGCT
AAGCAAAGGCTTGTCAAGATATCCAAGTGAGACGCGCGAGACACAACGTC
CGATTTAGGGTGTTCGTGTGATGTACGAGCGATTGAATGCGCACAAGACT
CAGGTGCAACTCCACGCAGCCAGAGAGGCAGGATAGGAATGTTTTTGTTT
CCCCCCTTTGTTTTAGGTACAGCACATTCAATGGCACTGACGGTCATGTG
TCAAACCCTTTCTTCCCAGTTTTGACCTTCACCGACACTGTATGGCTGAC
ATTCCCGCTGGAGGGATGTTCTGCATTCTCGGGGGGATTGACAGTCACAA
CCTACGTATGTTGATGAGTGTGCTGATAACCAACATCGCGACACACCCAA
CCCAATTCCCCTGCTGAGTTTTCCTTCCTCCACTGTCTCCACGAACCCCT
CCAATCCAATTGTACCCCTCGTCCTTCTTAGCGAGCGACGTCCGTACATG
CGTGCGGCATACTCGCTGTTCAAGGGCGATGCCAAGGAGAGCGACCTGGC
GAAGCAGATGATGGAGGTTTCGCCTGGGAACGTCGAGGGTACTGCTGGTT
CGGGAGCGCCGTACTTCTACGCGAACCTTTACCTGGGCCTGTACGCGGAG
GCCAAGGGGGAAGACGTTCTCGCCAGAAAATGTAAGGAATGATGTTTTGA
TTTTTGACTGATTCTGGTCGGGGGGGCGGAGGGGTCGTCCCTAGTTTGGC
GCTTTTTCCGCGGAACAAGTCAAGGCAAGGATTTATTGCCCACCTCGTGT
GATTCATCATGTGTATGTAAAATAATTCATTCGAGTCCAATTGTCTGTTT
CTGGCGAGGAAAATAAGCCAAATGAGCGATTTGATCAATTACGTGGCTTA
GGAGGGGTTGGAATGGCGGGTGCAGAGAAGGCAACTGTACTGGTATGCAC
TAATGCGGGGATAGGGGATATGAACCAGGTAAGTCTGGTTTTCGGTGTCT
CGTATATCGGCATCCACTCGCTGGTCATCTGGTCGCCAGTATGTCATCAT
GGCAATTCTGGTTTGATCGCGATATACTTATTTATTTGTATGCATTATTT
CATTTTTTTCATGACCGAGAAAGAAAGATGTGATTCAAGTGACATGACAC
AAGTCAGCTTTTTTTATGTTGAAGAAATTTAGCCTGAAGCAATGGATTAG
TTGATTCAGTTCATTCAACACGTGGACTGACGTCAAGTTTCAAAGTCTGT
GTCAAAAAACCAAACCGCGACCCCTTCGGCGTTACGGCTTACGGCCGTGG
CGAGGCCTGCCGTTCTCCTAGTTAGTTAGTTAGTTAGCTGGTTCGTCGAC
CTCTGCCTAGCTTTGGCGTGTGCTCACCTAATACTAACCTAGCCGTCCGC
ACCCCACCCCGCCCCACTCTCCGCTCTCCTCGCTATCGCTATCACTATCA
CTAATGAACGGCTGGCTTCCTGGCTGGCCGGACTGGACACACCTCCTCGA
AATTGTGCAAAACACGCGAAACGGCGTGTCCTTCCTCCCTCTTCATGTAT
GTATGTATGTGTGTATGATTGTGTCCAACTCATCTCTCTACCTCGATGCA
CCACTACCTGGCATGCCATGTCTGTCATGTACCGTCACCGTCACCGTCGT
GTAAAGATGTCACGGCTGCGGTAAAGTCATCCTACGCCAAGTCGGGGACT
ACATGTGCGACGTCGCACGCGTACATAAGAAAGTACGAGGGTGGTAAGAG
TAGTGAGTTGGTGAATTTGCCAGCATGCCAACACAGGTAACAGCATTAGA
GGAGCCGCTCTCACGCTCTCGCCGCTCCCTCGTCCGGGAAACTGTCAATA
GCTACGTTTGCTTAGATATGATGATGCCATAGCATAGCCGGGCCCTGGCC
CTGTCCATGATGTCCCGCTGCTGTTGGGCTGAGACTTTTCGGGCTGCCAA
CATCCGACATCGACATCAACCTCACCTATGGGCATCGTGTCACCGAAGGG
TTTCCGAAAGGCGTTTCCGAAAGGATGCCGAAGGGAGGGGTTGAATGTAG
CTCCCAAGTGGCGGTCGCAGTAGTCCTGATTTCTTCCAAGAGATACGCCG
CTTTCGGCTGTTTGGTACTTTCGCGGCATGAGCAAAAATCATGCGTAATC
ATGGCAAGATAAGGTAAAAGCTTGTTTACGGAGTGAGATCTCCGGCTGGC
TTTCGGCGCCGCGATAATGGTAGTAGTGGTGATGGTGATGGTGATGGTCT
GGCACAGGCAAGAAGATAGAAAAAGTTTAACAGTTTTTTTCGCGCCGACA
GAGTCTTGGTGACCGCTTCCGCGTCTTGTTTCCGACGGGACTGACGGCAG
ACGGGCGTTGAAGAGTGATGATGACCTTGCTAAGTGCTGCAGCTGTGCAG
ACAACGCGCAGATAGGTGGAGGACAGGCTTTTGATGGTGGCAGAGTCGTA
CACGCAATGGTGAATGGTGATGTTTGTGAGATATGAATCTGGGGGGTGAG
TGAGTGAATGCTGGTATTCGGAGTGAATGAATGGTGTGCGTGGTTGGTTG
ATAAATTAGCGCTTGACATGGACGGAACTGCTGTGGCTATTTTCTGGTTC
GTCCCAGGCCAACTGAGTATCGTAAGTTACGGATACATACGTGTAATCTA
TCTTGTCCCATATCTCTTTTTGTTGACGTCACGAGTTCTGCATCTCGCGG
AGCAAGACGAGTCTTGAAAAAATTAAGTGTCGCAAGTCATTGTCATTGTT
GTCCTGGTGAACGAAGGTAGCGTGCTGGCGGGAATACGCAAGATTAGCCC
TCTTTACAGAGAGAGGGTCACGCCTCAGGGGGTTGCATTGGTATTTCAAT
GCCCAGTATATTCCGCTGCACGTGTACAGTACGTCATCCACGTGTAGGAT
TGTATGATATAGGGACACACGTGCACTCTTATTTTTATTGTGCGTGTCTT
TTTTATTTTCTTGTGGCTTATATTATCGTGTTTTTGTTGTTTTTTTTGTT
GCCGAAATTTTGAGAATTTCAAACCCTTTTTTTTCGCACACGCAAGAAGG
AAGAGTTTTTCCTTCGATCTCGCCAGCTCAGCGCAACCAAACGAAACCAT
TTATCTTGGACGGCATGTCAACAGATAAAGATACTGTAGATGGGTTCTGA
GGGAAGAAAATGCGTAGGGGAATTATAATGAGAG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig120:149491..155624+

>mRNA_P-lacustris_contig120.1525.1 ID=mRNA_P-lacustris_contig120.1525.1|Name=mRNA_P-lacustris_contig120.1525.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1896bp|location=Sequence derived from alignment at P-lacustris_contig120:149491..155624+ (Pleurocladia lacustris SAG_25_93)
ATGAATCAGCTCCACATGGCTGTACACTCCTCACCTGCTTCAACTTCCAT
TTTTGCCAGGAACATCTTTCGCTTTCTCTCTCGCTCTCTCTCGCGATATC
ACGGCCAACCCCAAGATTTGATGCCCCACGTGTCTCGTGTAGCACTCCTT
CTCTCGCCGCTGTTCCTAGGCTGCTGCTGTGCATTTGTGGTGAAGCCGCT
TTATCTCGCCAGACGAGTGCGCAAAGCAGCACCCACCAGGGAAGGCGCAA
GCACCAGGATCTCCGCCGGGACGGCCATGACTACCAAGGAGGACTTCGAG
AGCTACGATGGTGGAGACTACACGATTTTTATTGGAAGGATGAATCAGCT
CCACATGGCTGTACACTCCTCACCTGCTTCAACTTCCATTTTTGCCAGGA
ACATCTTTCGCTTTCTCTCTCGCTCTCTCTCGCGATATCACGGCCAACCC
CAAGATTTGATGCCCCACGTGTCTCGTGTAGCACTCCTTCTCTCGCCGCT
GTTCCTAGGCTGCTGCTGTGCATTTGTGGTGAAGCCGCTTTATCTCGCCA
GACGAGTGCGCAAAGCAGCACCCACCAGGGAAGGCGCAAGCACCAGGATC
TCCGCCGGGACGGCCATGACTACCAAGGAGGACTTCGAGAGCTACGATGG
TGGAGACTACACGATTTTTATTGGAAGGGGAATGGAGAGATTTAGGCGTG
GGGAGGTGGAGGACTCTGTGAGCGATTTCGATCGTGCCATCCGCCTTCAG
CCCCGCTTATCGGCATACATGTGGCAGAGGGGTATCAGCTTGTACTATGG
GAATGGAGAGATTTAGGCGTGGGGAGGTGGAGGACTCTGTGAGCGATTTC
GATCGTGCCATCCGCCTTCAGCCCCGCTTATCGGCATACATGTGGCAGAG
GGGTATCAGCTTGTACTATGCCAATCAGTTCGAAGAGGGATCCAAGCAAT
TTCGGGCAGACGTCCAATCAGTTCGAAGAGGGATCCAAGCAATTTCGGGC
AGACGTGGCGTTAAATCCCAACGATACGGAAGAAGCGATCTGGACGTTCT
TGTGCGAGGCGAGAGTCCCAAGTATCGGATTCGCCACCGCTAAGCAAAGG
CTTGTCAAGATATCCAAGGCGTTAAATCCCAACGATACGGAAGAAGCGAT
CTGGACGTTCTTGTGCGAGGCGAGAGTCCCAAGTATCGGATTCGCCACCG
CTAAGCAAAGGCTTGTCAAGATATCCAACGAGCGACGTCCGTACATGCGT
GCGGCATACTCGCTGTTCAAGGGCGATGCCAAGGAGAGCGACCTGGCGAA
GCAGATGATGGAGGTTTCGCCTGGGAACGTCGAGGGTACTGCTGGTTCGG
GAGCGCCGTACTTCTACGCGAACCTTTACCTGGGCCTGTACGCGGAGGCC
AAGGGGGAAGACGTTCTCGCCAGAAAATCGAGCGACGTCCGTACATGCGT
GCGGCATACTCGCTGTTCAAGGGCGATGCCAAGGAGAGCGACCTGGCGAA
GCAGATGATGGAGGTTTCGCCTGGGAACGTCGAGGGTACTGCTGGTTCGG
GAGCGCCGTACTTCTACGCGAACCTTTACCTGGGCCTGTACGCGGAGGCC
AAGGGGGAAGACGTTCTCGCCAGAAAATATGTCACGGCTGCGGTAAAGTC
ATCCTACGCCAAGTCGGGGACTACATGTGCGACGTCGCACGCGTACATAA
GAAAGTACGAGGGTGGTAAGAGTAGTGAGTTGGTGAATTTGCCAGCATGC
CAACACAGGTAAATGTCACGGCTGCGGTAAAGTCATCCTACGCCAAGTCG
GGGACTACATGTGCGACGTCGCACGCGTACATAAGAAAGTACGAGGGTGG
TAAGAGTAGTGAGTTGGTGAATTTGCCAGCATGCCAACACAGGTAA
back to top