mRNA_P-lacustris_contig117.1297.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig117.1297.1
Unique NamemRNA_P-lacustris_contig117.1297.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig117.1297.1 vs. uniprot
Match: D7G0J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J1_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 2.750e-65
Identity = 123/214 (57.48%), Postives = 152/214 (71.03%), Query Frame = 1 
Query:    1 SRNPEQARKELQQLSEVCPGLEEGE-SEDE-RSDDEEGGPRDVPAERWGKLDGLTPNQRFFARLQGNEQGERPTTSVQTTAEKSKFDREALTFLVTPEQRRERGGLAH-TQVIDFNRWAGQWNEDVAQTERDVQAGRLEPIQDPSKQINRKAAFDLSNWWTESKKDVNTARTIENNKSQLQAMRERNRVRVHSSATESSGAVGVTFNGLRFSFP 633
            SR+P QARKEL  LSEV P L++G+ SEDE  +D EE   RD P  RWG +DG TPN+RFFAR+QG   GER TT+V T AEK KFDRE   FLV+PE R++  G    TQ I+F+ +A +WNEDV + ER+  AGRLE   D +K+INRKA FDL +WWTES+K+VNTART+E NK +L AM E+NRVR+   +T    AVG+T  G  FSFP
Sbjct:    2 SRDPAQARKELDGLSEVFP-LDDGDGSEDEGAADAEEDERRDAPKARWGTVDGCTPNERFFARMQGATPGERMTTAVITQAEKDKFDREVFQFLVSPEVRQQVAGHRRGTQSINFDAFAAKWNEDVGEIERNEVAGRLEVSGDANKKINRKAPFDLQSWWTESRKEVNTARTVEQNKDRLSAMYEKNRVRLSEPSTAERAAVGMTITGQTFSFP 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig117.1297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0J1_ECTSI2.750e-6557.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig117contigP-lacustris_contig117:103732..104545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size633
Cds size633
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.8324249-CDS-P-lacustris_contig117:103731..1041941622815481.8324249-CDS-P-lacustris_contig117:103731..104194Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig117 103732..104194 -
1693493564.141585-CDS-P-lacustris_contig117:103731..1041941693493564.141585-CDS-P-lacustris_contig117:103731..104194Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig117 103732..104194 -
1622815481.8459342-CDS-P-lacustris_contig117:104375..1045451622815481.8459342-CDS-P-lacustris_contig117:104375..104545Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig117 104376..104545 -
1693493564.1494324-CDS-P-lacustris_contig117:104375..1045451693493564.1494324-CDS-P-lacustris_contig117:104375..104545Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig117 104376..104545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig117.1297.1prot_P-lacustris_contig117.1297.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig117 103732..104545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig117.1297.1

>prot_P-lacustris_contig117.1297.1 ID=prot_P-lacustris_contig117.1297.1|Name=mRNA_P-lacustris_contig117.1297.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=211bp
SRNPEQARKELQQLSEVCPGLEEGESEDERSDDEEGGPRDVPAERWGKLD
GLTPNQRFFARLQGNEQGERPTTSVQTTAEKSKFDREALTFLVTPEQRRE
RGGLAHTQVIDFNRWAGQWNEDVAQTERDVQAGRLEPIQDPSKQINRKAA
FDLSNWWTESKKDVNTARTIENNKSQLQAMRERNRVRVHSSATESSGAVG
VTFNGLRFSFP
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mRNA from alignment at P-lacustris_contig117:103732..104545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig117.1297.1 ID=mRNA_P-lacustris_contig117.1297.1|Name=mRNA_P-lacustris_contig117.1297.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=814bp|location=Sequence derived from alignment at P-lacustris_contig117:103732..104545- (Pleurocladia lacustris SAG_25_93)
TCGCGCAACCCTGAACAAGCACGCAAAGAGTTGCAGCAGCTCTCTGAGGT
GTGCCCGGGGCTCGAGGAAGGAGAGTCGGAAGATGAGAGATCCGACGACG
AAGAAGGCGGACCTCGTGATGTTCCCGCTGAGCGATGGGGAAAGCTCGAC
GGCCTCACTCCCAACCAACGGTGAGTACCCTAGCCTGGCGAGTTAAAGAA
AACCCCAGCAGAAATACGAGATGGTAGCTGCTGCTAGCTGTTGTCTTGTC
GTTGCCGTACCCTCCTCCGCAAGGTTTCATTTCCGCTGATCAGATACGTT
GCCCTTCGTTGTGCATGTACCTTATTTTTCGTGTGCTTTGTCTGCCTATA
GGTTCTTCGCTCGGCTGCAGGGAAATGAGCAAGGAGAGCGCCCTACCACC
TCCGTCCAGACGACGGCAGAGAAGTCCAAGTTCGACCGTGAGGCTCTCAC
GTTTTTGGTCACGCCGGAGCAGAGACGAGAGCGTGGCGGCCTCGCTCACA
CCCAGGTGATCGATTTCAATCGCTGGGCGGGGCAGTGGAACGAGGACGTG
GCGCAAACAGAGAGAGACGTACAGGCTGGTCGCCTGGAGCCGATTCAAGA
TCCGTCCAAACAGATCAACCGCAAGGCGGCGTTCGACCTCAGCAACTGGT
GGACAGAGTCGAAGAAGGATGTGAACACCGCCCGCACAATAGAGAACAAC
AAGTCTCAGCTACAAGCGATGCGAGAGCGGAATCGTGTTCGGGTGCACTC
GTCAGCCACCGAGTCGAGTGGAGCGGTTGGTGTCACGTTCAACGGACTTC
GGTTTTCCTTCCCC
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Coding sequence (CDS) from alignment at P-lacustris_contig117:103732..104545-

>mRNA_P-lacustris_contig117.1297.1 ID=mRNA_P-lacustris_contig117.1297.1|Name=mRNA_P-lacustris_contig117.1297.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1266bp|location=Sequence derived from alignment at P-lacustris_contig117:103732..104545- (Pleurocladia lacustris SAG_25_93)
TCGCGCAACCCTGAACAAGCACGCAAAGAGTTGCAGCAGCTCTCTGAGGT
GTGCCCGGGGCTCGAGGAAGGAGAGTCGGAAGATGAGAGATCCGACGACG
AAGAAGGCGGACCTCGTGATGTTCCCGCTGAGCGATGGGGAAAGCTCGAC
GGCCTCACTCCCAACCAACGTCGCGCAACCCTGAACAAGCACGCAAAGAG
TTGCAGCAGCTCTCTGAGGTGTGCCCGGGGCTCGAGGAAGGAGAGTCGGA
AGATGAGAGATCCGACGACGAAGAAGGCGGACCTCGTGATGTTCCCGCTG
AGCGATGGGGAAAGCTCGACGGCCTCACTCCCAACCAACGGTTCTTCGCT
CGGCTGCAGGGAAATGAGCAAGGAGAGCGCCCTACCACCTCCGTCCAGAC
GACGGCAGAGAAGTCCAAGTTCGACCGTGAGGCTCTCACGTTTTTGGTCA
CGCCGGAGCAGAGACGAGAGCGTGGCGGCCTCGCTCACACCCAGGTGATC
GATTTCAATCGCTGGGCGGGGCAGTGGAACGAGGACGTGGCGCAAACAGA
GAGAGACGTACAGGCTGGTCGCCTGGAGCCGATTCAAGATCCGTCCAAAC
AGATCAACCGCAAGGCGGCGTTCGACCTCAGCAACTGGTGGACAGAGTCG
AAGAAGGATGTGAACACCGCCCGCACAATAGAGAACAACAAGTCTCAGCT
ACAAGCGATGCGAGAGCGGAATCGTGTTCGGGTGCACTCGTCAGCCACCG
AGTCGAGTGGAGCGGTTGGTGTCACGTTCAACGGACTTCGGTTTTCCTTC
CCCGTTCTTCGCTCGGCTGCAGGGAAATGAGCAAGGAGAGCGCCCTACCA
CCTCCGTCCAGACGACGGCAGAGAAGTCCAAGTTCGACCGTGAGGCTCTC
ACGTTTTTGGTCACGCCGGAGCAGAGACGAGAGCGTGGCGGCCTCGCTCA
CACCCAGGTGATCGATTTCAATCGCTGGGCGGGGCAGTGGAACGAGGACG
TGGCGCAAACAGAGAGAGACGTACAGGCTGGTCGCCTGGAGCCGATTCAA
GATCCGTCCAAACAGATCAACCGCAAGGCGGCGTTCGACCTCAGCAACTG
GTGGACAGAGTCGAAGAAGGATGTGAACACCGCCCGCACAATAGAGAACA
ACAAGTCTCAGCTACAAGCGATGCGAGAGCGGAATCGTGTTCGGGTGCAC
TCGTCAGCCACCGAGTCGAGTGGAGCGGTTGGTGTCACGTTCAACGGACT
TCGGTTTTCCTTCCCC
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