mRNA_P-lacustris_contig111.912.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig111.912.1 vs. uniprot
Match: D7FYU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYU8_ECTSI) HSP 1 Score: 732 bits (1889), Expect = 2.510e-246 Identity = 389/535 (72.71%), Postives = 420/535 (78.50%), Query Frame = 1
Query: 43 MKTRLRSKSTTDGGS-SDGSRMTGHLQGREPSESTLSSRAESLVDSQISRRASSMLSTGLQTIGLNVCATSNPTGNEDRAPAGMRKKWQQHYAYGKWIQLGKMFCQTACVVFFVMCVLWSQLCYPLALNSKTLLEAIIDGNDQAASGSTYKKWLLGLFSDEEELTGAYALHNIYMWHITNPSEILNQGFKPKLAETGPLGYVKRTTKYDVRFSADDSDKVTYRSWTMYDPAENARDCTDMFFRMDKAKLRKGIVDCSANSCDCVDDTQEVTVVNPPFLKLMQQYEPSGIISTLSQEVFASIKEGMTVGFVRATKAYILPTVLDDVYRFRKAFLTTDGVLRSIFTTVSATNGTSVAVSTLRGSYHDASVDCQGFQPSGYSSGCPWGLLSFIQSAANSLGVDGSFSEAEAEYLLGLRPQINGSIFDSAGGTLKWIAAGRYEGYLSAPSLPHPREVDLTGEVAFYDLV---CTWEAADGGTTPSSQECQAKVSGILEWLFGVWFTEEHKLEGLVTDDWRGALSGSADVICDTVGSACP 1635
M LR+KSTTDGGS SDGSR + HLQ R+PS+S+LSSRAESLVDSQ+SR ASS+ STGLQT+GL V TS TGNEDRAPAGM+KKWQQHYAYGKWIQLGKMFC QLCYPLALNSKTL EAIIDGNDQAASGSTY KWLLGLFSDE PKLAETGPLGY+KRTTKYD RFS+D SD VTYRSWT+YDP E+ RDCTDMFFRM A+LR+GIVDC+ SCDCVDDTQ+VTVVNPPFLKLMQQYEPSGIISTLSQEVFA IKEGMT GFVRATKAYILPTVL+DVY FRKAFLT D VLRSIF++VSAT+GT+ AVSTLR SY D SVDCQGFQPSGYS+ CPWGLLSFIQSAA SLGVDGSFSEAEAE+LLGLR Q +GSIFDS+GG LKWIAAGRYEGYLSAPSLPHP EVDLTGE AF DLV CTWEA +GG+ PS QECQ E+KLEG V D+WRGA SG+ DVICD VGS CP
Sbjct: 1 MMASLRAKSTTDGGSVSDGSRTSAHLQDRDPSDSSLSSRAESLVDSQVSR-ASSVFSTGLQTVGLKVGPTSKATGNEDRAPAGMKKKWQQHYAYGKWIQLGKMFC---------------QLCYPLALNSKTLFEAIIDGNDQAASGSTYNKWLLGLFSDE-----------------------------PKLAETGPLGYIKRTTKYDARFSSDFSDTVTYRSWTVYDPVEDPRDCTDMFFRMGNARLRQGIVDCNTTSCDCVDDTQQVTVVNPPFLKLMQQYEPSGIISTLSQEVFADIKEGMTEGFVRATKAYILPTVLNDVYSFRKAFLTADSVLRSIFSSVSATDGTATAVSTLRSSYDDTSVDCQGFQPSGYSNSCPWGLLSFIQSAATSLGVDGSFSEAEAEHLLGLRSQTDGSIFDSSGGMLKWIAAGRYEGYLSAPSLPHPSEVDLTGESAFDDLVATVCTWEATNGGSAPSLQECQ-----------------ENKLEGYVIDEWRGASSGTIDVICDAVGSVCP 473
BLAST of mRNA_P-lacustris_contig111.912.1 vs. uniprot
Match: A0A6H5KQ90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ90_9PHAE) HSP 1 Score: 513 bits (1322), Expect = 3.010e-165 Identity = 306/619 (49.43%), Postives = 348/619 (56.22%), Query Frame = 3
Query: 1917 QVCWIASNMFGSWIGDSTWLNHIIVNHLNASVVELTGYQLNGDDIEDIGYVQWTTGAVLFALLGLQTLGTVTHDGIWRFMEESLHVLGPELSTQVAIAGYPDMANVAIESGKVLLDILADNSDEADEFRRFILRQSTTYYGESDNWWEGPTSTAGTFAPGNVLFIQENPYGDFSSAAWEGGTQSSEVIGLQSWLDTSFLSSSEQCYALEGLYERCLAKARSLLWDVADGEEWPDNCNFFQTIISDTASGIECDATRIYDNAHSYPKKPGNVIAAFMHTLALEEASTLLTRSTVLKKHYLLCDDPTNCDYARGGYFTTQRARDIVFEGYTDSLTVKLMNKGLSARNLSIRCSVPSVVLWDMYCQPLYDGDCTNTGFEVVHDTYGTVLEANKTGSSRHLWYTAELSLPHDLGSIHNPIFAVYPGGHWDNETFQKQIDCDKRTLGGKQAYGTAAIRRLKLAATTQRGSGEQMLTTETNPCELPWGRTRRWRCMEQMVLKMPRKSGKGLGSTN*STGYETRASTTLGTIRWLCFWVITFFSSIWRGTIPARPSSTRRATLRRMTSRWKLTFVLIATSHKHRRG*LHDFFFSWVDARERVGDDLLTDFNGMPYSVPMGMVSTQV 3773
QVC IASN+FGSW+G+STWLNHIIVNH+NASV ELTGY+L+GD IEDIGYVQW TGAV FALLGLQTLGT+THDGIWRFMEES H LGPELSTQVA+AGY +M N IE GK LLD+LA++SDEADEFRRFI+RQSTT WEGP+ST+G+F PG+VLFIQENPYGDFSSAAWEG SSEV GLQSWLDTSF+SS EQCY LEG YE CLAK VLKK +LLCDD NCDY +GGYFTTQRARDI+FEGYTDSLTVKLMNK LS RNL+I+CSVPSVVLWDMYC PL+DGDCTNTGFEVVHDTYGTV +TGS P +G + +Y G N++ + D + YGT T+ P R+W + L + R +GL T + L F T TR T + + W+DARERVG+D LTDFNGMPYSVPMGMVSTQV
Sbjct: 3 QVCGIASNIFGSWVGESTWLNHIIVNHINASVFELTGYELDGDSIEDIGYVQWATGAVSFALLGLQTLGTITHDGIWRFMEESRHNLGPELSTQVALAGYSNMGNATIEYGKALLDLLAEDSDEADEFRRFIVRQSTT--------WEGPSSTSGSFDPGDVLFIQENPYGDFSSAAWEGTALSSEVTGLQSWLDTSFMSSPEQCYVLEGFYESCLAK--------------------------------------------------------------------------VLKKDHLLCDDADNCDYTKGGYFTTQRARDIIFEGYTDSLTVKLMNKRLSGRNLTIKCSVPSVVLWDMYCHPLFDGDCTNTGFEVVHDTYGTV----ETGSDD----------PQRIGRTN-----LYYG----NDSLLAAVGLDSSL----EVYGTDG--------------------TQDTP--------RKWEGFGEYKL-VYRLRNEGLDYLGNDTVVVLQGEHLLQ------------FHMARDSTDAVLQYPTRYLAEDNFTLETDIRLNRYIAQTQ-----------DWLDARERVGEDQLTDFNGMPYSVPMGMVSTQV 460
BLAST of mRNA_P-lacustris_contig111.912.1 vs. uniprot
Match: A0A7S1XWL1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWL1_9STRA) HSP 1 Score: 297 bits (761), Expect = 9.970e-79 Identity = 244/900 (27.11%), Postives = 395/900 (43.89%), Query Frame = 3
Query: 1689 AALMIDPAEQDTRNDLSHYTMDGQTLWDRAYTYC---TAHPSTPIECDQGSRYLEAANETLPGLLEAAEGSM----------EWTL--YREQVCWIASNMFGSWIGDSTWLNHIIVNHLNASVVELTGYQLNGDDIEDIGYVQWTTGAVLFALLGLQTLGTVTHDGIWRFMEESLHVLGPELSTQVAIAGYP-DMANVAIESGKVLLDILADNSDEADEFRRFILRQSTTYYGESDNWWEGPTSTAGTFAPGNVLFIQENPYGDFSSAAWEGGTQSSEVIGLQSWLDTSFLSSSEQCYALEGLYERCLAKARSLLWDVADGEEWPDNCNFFQTIISDTASGIECDATRIYDNAHSYPKKPGNVIAAFMHTLALEEASTLLTRSTVLKKHYLLCDDPTNCDYARGGYFTTQRARDIVFEGYTDSLTVKLMNKGLSARNLSIRCSVPSVVLWDMYCQPLYDGDCTNTGFEVVHDTYGTVLEANKTGSSRHLWYTAELSLPHDLG----SIHNPIFAVYPGGHWDNETFQKQIDCDKRTLGGKQAYGTAAIRRLKLAATTQRGSGEQMLTTETNPCELPWGR-TRRWRCMEQMVLKMPRKSGKGLGSTN*STGYETRASTTLGTIRWLCFWVITFFSSIWRG----TIPARPSSTRRATLRRMTS--------RWKLTFVLIATSHKHRRG*LHDFFFS---WVDARERVGDDLLTDFNGMPYSVPMGMVSTQVLTGYATFVSDPHFLTNALLDRQEAEQMNYIEPRGTHHQSLVDVEPVTGKVLRRALRLQLLFRIERSSFSPDILSSESSFSVCRSPTKDTMADGAGCFMYVPILWFDDQRIMDAESAKTLHREFLAYVDFALGTAWKGFVASGTLAVFGSMIWTIIVVLKAKHDRRVWVD 4280
A+L++ D NDLS Y ++ C A T E + Y NE P LL+ EG WT+ YR+ C F ++ D W +V LN +V + + Y D I D+GY QW TG V +AL G++++ V GIW + E + + YP +M ++A +L ++A+ SD A +R ++R STT G+ +N+ T G A G+V F++ENP G+F+ + + + S +C ALE +Y CL + + +G + C+ +QTI+S+ A GI+CD +I H P GN+++ M + E + + L+C D +CDY RGG +T Q+ R+I+F+GY D + ++++N L A +L + C+ + +C P+ D DCT+ G + + G + + H W+ E ++ LG ++ NP FA++ GG N TFQK++DCD + + A + R+ T RG +++ N E G T ++ + G G G + + G + +++ + G T+ R +R + + + + F + + L+ F S W + G+D+ TD GMPY +P+GM T+ L G +FVS PH NA E Q ++P H++ VDV+PV+G+ R A RLQ R+ER+S P ++SS+ C PT++ A G GCFMY PI W DDQ D + + + D A + + G +I I + K +V+VD
Sbjct: 540 ASLIMSTTNADNSNDLSIYVPANWDMYGDIQKVCKMEAAGDDTSCENMEDETYYR--NEYFPELLK--EGHQLSANYSALYAHWTIEDYRDLTCDWIDFFFTTFREDWGWYQDQLVFWLNDNVADAS-YNFTVDTIPDLGYAQWGTGGVTYALYGVRSVRNVKRQGIWIWGSAEYQESFIEFGARASKRAYPHNMFSIA--ESMTVLRMMANTSDAAQNYRAHVMRASTTVEGDGENF------TNGVGAVGDVAFVEENPGGNFTYLYTDP-----YFTAVYDAVSVVAQSDPVECEALETMYYDCLNR-------ITEGNTYLTRCDSWQTILSNPAYGIQCDPNQIVGLPHPQPLSRGNILSHLMEDMTYE---------VIFRAEQLICLDTGDCDYMRGGLYTNQKVRNILFDGYVDPVVLRIVNTELLAHDLQMVCNHDRTLGTSDFCVPIADNDCTDLGINITVRSTGEHVYTFSRTENPHAWFANEFTVD-VLGDRNVTVRNPAFALHRGGLSKNITFQKKMDCDSQYMHSTSAVFSGCETRVH----TGRGDLDRI-----NKYEFFKGNSTMEVTANGRVHISTLELEAAGQGRDAPYFGLQFKPFLWEGFASYPYSYLLRDAGNDNLGEEDITMYYPEHLLRLNMVRHIPTVVEPQPALEYPVRFAFVRNESRELSVRLNRFVASEDAWRGYFDVAGNDM-TDLYGMPYQLPIGMAPTRALNGIGSFVSTPHHYGNAEWGGVEYIQFKGLDPEERAHKTFVDVDPVSGRPFRTATRLQHNVRVERNSLFPKMISSQGR---CEVPTREFNALGYGCFMYHPIYWVDDQVAYDEKRLREYTERYKEEPDNAFLVLLVSCIGGAAGVLIGGVINYIQHRRERKFKNKVYVD 1391
BLAST of mRNA_P-lacustris_contig111.912.1 vs. uniprot
Match: A0A835YN97_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN97_9STRA) HSP 1 Score: 295 bits (756), Expect = 6.070e-78 Identity = 275/956 (28.77%), Postives = 413/956 (43.20%), Query Frame = 3
Query: 1662 ADLNISASAAALMIDPA---EQDTRNDLSHYTMDGQTLWDRAYTYCTAHPSTPIECDQGSRYLEAANETLPGLLEAAEGSME--WTLYREQVCWIASNMFGSWIGDSTWLNHIIVNHLNASVVELTGYQLNGDDIEDIGYVQWTTGAVLFALLGLQTLGTVTHDGIWRFMEESLHVLGPELSTQVAIAGYPDMANVAIESGKVLLDILADNSDEADEFRRFILRQSTTYYGESDNWWEGPTSTAGTFAPGNVLFIQENPYGDFSS---------------------------------AAWEGGTQSSEVIGLQSWLDTSFLSSSEQCYALEGLYERCLAKARSLLWDVADGEEWPDNCNFFQTIISDTAS----GIECDATRIYDNAHSYPKKPGNVIAAFMHTLALEEASTLLTRSTVLKKHYLLCDDPTNCDYARGGYFTTQRARDIVFEGYTDSLTVKLMNKGLSARNLSIRCSVPSVVLWDM-YCQPLYDG-DCTNTG-FEVVHDTYGT--VLEANKTGSSRHLWYTAELSLPHDLGSIHNPIFAVYPGGHWDNETFQKQIDC-DKRTLGGKQAYGTAAIRRLKLAATTQRGSGEQMLTTETNPCELPWGRTRRWRCMEQMVLKMPRKSGKGLGSTN*STGYETRASTTLGTIRWLCFWVITFFSSIWRGTIP----------ARPSSTRRATLRRMTSRWKLTFVLIATSHKHRRG*LHDFFFSWVDARERVGDDLLTDFNGMPYSVPMGMVSTQVLTGYATFVSDPHFLTNALLDRQEAEQMNYIEPRGTHHQSLVDVEPVTGKVLRRALRLQLL------------------------FRIERSSFSPDILSSESSFSVCRSPTKDTMADGAGCFMYVPILWFDDQRIMDAESAKTLHREFLAY-VDFALGTAWKGFVASGTLAVFGSMIWTIIVVLKAKHDRRVWVD 4280
A +S AA ++DP D + LS ++ G LW AY YC+A + E + +EAA TLP AA+ + + +C A +F +W G S W +L+A + + T + + DD+ +GY QW G V AL GL ++ V G W + + PE + A AGYP MA + + + + LL LA D R ++ ++TTYYG D +G FA G+ + ++EN D+++ A GG ++ L + T+ LSS+ +C AL+ ++ C+A A LL D NC+ FQT +++ A G +C A R+ + H +PK+ G V+A + + + L+ V DD CD+ARGG FTT A +++F G D L +KL++ AR +S C+ P+ + D C + G C G F V D G V + + + LW+ AE+ LP G + +P+FA+ PGG W +E FQK C D R LGG + T+ + + LP+G RR +P SG L T + E + + R V T ++ P A PS+ T R TSR KL +S W A RVG L D GMPY+VP GM +T L+G +F SD HF +NA + ++ + P + H S VDV+PVTG +R ALR QL R+ERS+ P + +++ C +PTK A G GCF+Y+P+ W DDQR++D SA+ L EF Y +A TA G+++W + + + + V+VD
Sbjct: 565 AAAGLSLEAARSIMDPGLATVSDAPSLLSVHSPKGFILWADAYRYCSAPDRSCAEFSPSA--IEAATVTLPANFPAADAAADPSGAARAAAICSTAQYLFRNWAGTSPWAAGAAARYLSAVLPQGT-FSVT-DDLTALGYAQWGGGHVTRALYGLPSVTAVARAGAWALVPRRFYGALPEFGARAAAAGYPSMA-LPVATARALLTGLARADDAGRALRAHVITRATTYYGTGDG--DG-------FAAGDAMHVEENTAADYATDDPQHSXXXXXXXXXXXXXXXXXXXXXXXXXQVIAALGGDAAAAARHLAALCATT-LSSAAECAALDTYHQHCVASA--LLPDSV-----AVNCDAFQTRVANPARDPLRGAQCTAARLEVHYHPWPKQAGGVLADALSSYVWRQV--LMDGGYVCAAGVAAADD---CDHARGGLFTTAPALNVLFRGRADPLVMKLLSTRYRARGVSYACATPAAIARDADTCAMIESGAPCGGDGGFTVRADGGGASPVEVVSVSPAQPALWHAAEVQLPRGGGGVRSPVFALRPGGTWGDEAFQKAQACGDWRMLGGPAGLWNRRDNNFNIVNTSTCHNFNDLWEGFARYA-LPYG-ARRSGTRADGSGTVPVLSGDAL--TVFAMAREDAQALSSAEKRAAALRVPTPTTNAQLTARPEVYAPVNRYYAGPSTNNLLTFR--TSR-KLIIEKACSSDAI-------VCSDWAAAGARVGLSL-RDSLGMPYAVPPGMSATAALSGMPSFASDAHFYSNAAAGGVDWSRLQNLSPAQSRHASTVDVDPVTGIAMRHALRTQLSDXXXXXXXXXXXXXXXXXXXXXVSLRVERSALLPALTTNQDR---CPAPTKTAFAGGYGCFLYIPLAWTDDQRVIDDASARRLADEFWLYPTRYAPRTAAXXXXXXXXXXXGGALLWAVCRWRRRRFEAIVYVD 1475
BLAST of mRNA_P-lacustris_contig111.912.1 vs. uniprot
Match: A0A7S2D3W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3W4_9STRA) HSP 1 Score: 124 bits (311), Expect = 4.010e-27 Identity = 66/201 (32.84%), Postives = 101/201 (50.25%), Query Frame = 3
Query: 2811 LLC--DDPTNCDYARGGYFTTQRARDIVFEGYTDSLTVKLMNKGLSARNLSIRCSVPSVVLWDMYCQPLYDGDCTNTGFEVVHDTYGTV--------------------------------------------LEANKTGSSRHLWYTAELSLPHDLGSIHNPIFAVYPGGHWDNETFQKQIDCDKRTLGG-KQAYGTAAI 3272
L+C DD CD+ +GG +TTQ+ARD++FEGY D +TVK +N L+ +NL+I C +V + C +Y+ DCT GF V++ TV L+ +++G + WY+ EL LP+ LG+I NP+FA+Y G W N++F +Q +C+ R L G K + + I
Sbjct: 3 LMCANDDSRTCDFMKGGLYTTQKARDVLFEGYVDPITVKFLNYDLAEKNLTIVCKNQTVRSRNEVCGEVYEPDCTAGGFHVLYTRNDTVWYNDEAVKLGPNGEVFTTVGMTTTSTYVNSTTYERRNETITEIILDVDRSGENLWQWYSPELELPYGLGAIKNPVFAIYQGQLWQNDSFHQQRECEHRILNGPKNKFASCEI 203 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig111.912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig111.912.1 >prot_P-lacustris_contig111.912.1 ID=prot_P-lacustris_contig111.912.1|Name=mRNA_P-lacustris_contig111.912.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=583bp MIDPAEQDTRNDLSHYTMDGQTLWDRAYTYCTAHPSTPIECDQGSRYLEAback to top mRNA from alignment at P-lacustris_contig111:169348..182003+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig111.912.1 ID=mRNA_P-lacustris_contig111.912.1|Name=mRNA_P-lacustris_contig111.912.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=12656bp|location=Sequence derived from alignment at P-lacustris_contig111:169348..182003+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig111:169348..182003+ >mRNA_P-lacustris_contig111.912.1 ID=mRNA_P-lacustris_contig111.912.1|Name=mRNA_P-lacustris_contig111.912.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3498bp|location=Sequence derived from alignment at P-lacustris_contig111:169348..182003+ (Pleurocladia lacustris SAG_25_93)back to top |