mRNA_P-lacustris_contig111.910.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig111.910.1
Unique NamemRNA_P-lacustris_contig111.910.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig111.910.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 7.800e-56
Identity = 126/176 (71.59%), Postives = 137/176 (77.84%), Query Frame = 3 
Query:  270 SLGGPLSPTGGXXXXXXXGG------ISRAAMAALRARANGAPRVRKRWCVLDATRFTLFHTRSKTKIKDFVELDPKKVVLVTPPFTPWGRAGGGCSSAGGAGGSVGAGKGEDATNERDAVALVCFDFPAETGTLVIRAESVESQDVWVRAFAARLTSRDHHARMSELYGAG-GDE 776
            SLGG LSPTGGXXXXXXX        ISRAAMA +RARANGAP+VRKRWCVLDATR TLF TR+KT++K+ V+LDP +V LVTPPFTPWGRAGGG               GED TNERDAVALV F  P ETGTLVIRAESVE+Q VWVRA AARLTSR+HHARM+ELYG G GDE
Sbjct: 4677 SLGGALSPTGGXXXXXXXXXXXXXXXISRAAMA-IRARANGAPKVRKRWCVLDATRLTLFRTRTKTRVKESVQLDPSRVALVTPPFTPWGRAGGGVXXXXXXXXXXXX-XGEDVTNERDAVALVVFRNPTETGTLVIRAESVEAQHVWVRALAARLTSREHHARMAELYGGGAGDE 4850
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BLAST of mRNA_P-lacustris_contig111.910.1 vs. uniprot
Match: A0A836CI77_9STRA (DENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI77_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.230e-14
Identity = 53/132 (40.15%), Postives = 74/132 (56.06%), Query Frame = 3 
Query:  381 RVRKRWCVLDATRFTLFHTRSKTKIKDFVELDPKKVVLVTPPFTPWGRAGGGCSSAGGAGGSVGAGKGEDATNERDAVALVCFD---FPAET--GTLVIRAESVESQDVWVRAFAARLTSRDHHARMSELYG 761
            +V++RWC+LDAT+ + + +RSKT++K ++  +P  V LVTPPF                  +V +G    AT E D VALV       P E+  GTLVIRAE + +  + VRA  A+LT R+H   M  LYG
Sbjct: 4017 KVKRRWCILDATKLSYYRSRSKTRVKGYIPFEPASVSLVTPPF------------------AVHSGH---ATTEHDCVALVWNQEAAAPGESVPGTLVIRAEDMTTHRMLVRALKAKLTPREHLTMMRSLYG 4127
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig111.910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV2_ECTSI7.800e-5671.59PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A836CI77_9STRA3.230e-1440.15DENN domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig111contigP-lacustris_contig111:160339..161402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1064
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig111.910.1prot_P-lacustris_contig111.910.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig111 160683..161117 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815401.8266058-UTR-P-lacustris_contig111:160338..1606821622815401.8266058-UTR-P-lacustris_contig111:160338..160682Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig111 160339..160682 +
1693493524.275579-UTR-P-lacustris_contig111:160338..1606821693493524.275579-UTR-P-lacustris_contig111:160338..160682Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig111 160339..160682 +
1622815401.8523676-UTR-P-lacustris_contig111:161117..1614021622815401.8523676-UTR-P-lacustris_contig111:161117..161402Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig111 161118..161402 +
1693493524.3006065-UTR-P-lacustris_contig111:161117..1614021693493524.3006065-UTR-P-lacustris_contig111:161117..161402Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig111 161118..161402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815401.8395185-CDS-P-lacustris_contig111:160682..1611171622815401.8395185-CDS-P-lacustris_contig111:160682..161117Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig111 160683..161117 +
1693493524.285032-CDS-P-lacustris_contig111:160682..1611171693493524.285032-CDS-P-lacustris_contig111:160682..161117Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig111 160683..161117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig111.910.1

>prot_P-lacustris_contig111.910.1 ID=prot_P-lacustris_contig111.910.1|Name=mRNA_P-lacustris_contig111.910.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=145bp
MAALRARANGAPRVRKRWCVLDATRFTLFHTRSKTKIKDFVELDPKKVVL
VTPPFTPWGRAGGGCSSAGGAGGSVGAGKGEDATNERDAVALVCFDFPAE
TGTLVIRAESVESQDVWVRAFAARLTSRDHHARMSELYGAGGDE*
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mRNA from alignment at P-lacustris_contig111:160339..161402+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig111.910.1 ID=mRNA_P-lacustris_contig111.910.1|Name=mRNA_P-lacustris_contig111.910.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1064bp|location=Sequence derived from alignment at P-lacustris_contig111:160339..161402+ (Pleurocladia lacustris SAG_25_93)
GGCGCACAGAACGAGTGCCGTGCAACACTCGTCTGGTAGGGCAAGCTGCC
TGTTTCGGGATCACTACTATTTTCCGCTGTACGGTGCAGCAGCATCGCCC
AGTACAGTAGTGGCGCCGCGCGTATGTACACATGTTCAAGTGTTACAACC
CGAAACATCTCCCTCACGTTATCTCTCCCGTCCGTCGTTGATGCTCGCGC
TCCTTTGAACTGCATCATGATGCAAATCTCTGTACCGTGAAAAACTGTCG
CTCATACGGTAACCACAGCTCGCTCGGTGGTCCTTTGTCGCCGACCGGCG
GGGGTGGTGGCGGCGGCGCGAGCGGGGGCATCTCTCGGGCCGCCATGGCG
GCGCTCAGGGCGAGGGCGAACGGAGCCCCTAGAGTCCGGAAGCGCTGGTG
CGTTTTGGACGCAACTCGGTTTACACTGTTCCACACCCGCAGCAAGACCA
AGATCAAGGACTTCGTGGAACTCGATCCGAAAAAGGTAGTGCTCGTGACG
CCGCCCTTCACGCCGTGGGGCAGGGCGGGTGGCGGGTGCAGTAGCGCCGG
GGGTGCAGGCGGCAGCGTGGGGGCGGGCAAGGGCGAGGACGCGACGAATG
AACGGGACGCGGTGGCGTTGGTTTGCTTTGACTTCCCGGCCGAAACAGGC
ACGCTTGTCATCCGCGCGGAGTCGGTGGAATCTCAAGATGTTTGGGTCCG
TGCTTTCGCAGCCAGGTTGACAAGCAGAGACCACCACGCTCGGATGTCGG
AGTTGTACGGAGCAGGAGGGGATGAATAGGGTTAGGGCTGAGTTGTAAGA
GGGGCGTGTGGATGATCTTGGGTGTGTTTATTCGTTTGGTTTCTTGTGCA
CCTGAAATAGGCGTAGACATTGCTGTGGAAGGGTGGTCTGGTCGGCCGTT
GCAAAACCGGCGGTAGGTAGTGATCATGCGGCATCAGCGCCGTTGTAGTT
TGTGTGCTTTTTTCCTTGTAGTTCGTGTGAATTTTGCTCGTTAATTCCTA
GTCTCCCTGCCGGCGATTGGTAGGGAGGGGTCCACGTTGTTCTGTACGAG
ATGGAGATCATTTT
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Coding sequence (CDS) from alignment at P-lacustris_contig111:160339..161402+

>mRNA_P-lacustris_contig111.910.1 ID=mRNA_P-lacustris_contig111.910.1|Name=mRNA_P-lacustris_contig111.910.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=870bp|location=Sequence derived from alignment at P-lacustris_contig111:160339..161402+ (Pleurocladia lacustris SAG_25_93)
ATGGCGGCGCTCAGGGCGAGGGCGAACGGAGCCCCTAGAGTCCGGAAGCG
CTGGTGCGTTTTGGACGCAACTCGGTTTACACTGTTCCACACCCGCAGCA
AGACCAAGATCAAGGACTTCGTGGAACTCGATCCGAAAAAGGTAGTGCTC
GTGACGCCGCCCTTCACGCCGTGGGGCAGGGCGGGTGGCGGGTGCAGTAG
CGCCGGGGGTGCAGGCGGCAGCGTGGGGGCGGGCAAGGGCGAGGACGCGA
CGAATGAACGGGACGCGGTGGCGTTGGTTTGCTTTGACTTCCCGGCCGAA
ACAGGCACGCTTGTCATCCGCGCGGAGTCGGTGGAATCTCAAGATGTTTG
GGTCCGTGCTTTCGCAGCCAGGTTGACAAGCAGAGACCACCACGCTCGGA
TGTCGGAGTTGTACGGAGCAGGAGGGGATGAATAGATGGCGGCGCTCAGG
GCGAGGGCGAACGGAGCCCCTAGAGTCCGGAAGCGCTGGTGCGTTTTGGA
CGCAACTCGGTTTACACTGTTCCACACCCGCAGCAAGACCAAGATCAAGG
ACTTCGTGGAACTCGATCCGAAAAAGGTAGTGCTCGTGACGCCGCCCTTC
ACGCCGTGGGGCAGGGCGGGTGGCGGGTGCAGTAGCGCCGGGGGTGCAGG
CGGCAGCGTGGGGGCGGGCAAGGGCGAGGACGCGACGAATGAACGGGACG
CGGTGGCGTTGGTTTGCTTTGACTTCCCGGCCGAAACAGGCACGCTTGTC
ATCCGCGCGGAGTCGGTGGAATCTCAAGATGTTTGGGTCCGTGCTTTCGC
AGCCAGGTTGACAAGCAGAGACCACCACGCTCGGATGTCGGAGTTGTACG
GAGCAGGAGGGGATGAATAG
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