mRNA_P-lacustris_contig1107.890.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1107.890.1
Unique NamemRNA_P-lacustris_contig1107.890.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1107.890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1107contigP-lacustris_contig1107:32665..33250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.285407-UTR-P-lacustris_contig1107:32664..327971622815397.285407-UTR-P-lacustris_contig1107:32664..32797Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1107 32665..32797 +
1693493521.284048-UTR-P-lacustris_contig1107:32664..327971693493521.284048-UTR-P-lacustris_contig1107:32664..32797Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1107 32665..32797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815397.2960784-CDS-P-lacustris_contig1107:32797..332501622815397.2960784-CDS-P-lacustris_contig1107:32797..33250Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1107 32798..33250 +
1693493521.2935166-CDS-P-lacustris_contig1107:32797..332501693493521.2935166-CDS-P-lacustris_contig1107:32797..33250Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1107 32798..33250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1107.890.1prot_P-lacustris_contig1107.890.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1107 32798..33250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1107.890.1

>prot_P-lacustris_contig1107.890.1 ID=prot_P-lacustris_contig1107.890.1|Name=mRNA_P-lacustris_contig1107.890.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=151bp
MPPLRLATGTASWHGAGAPVLAIKDGDEHFCTVPLAQIADSRCADLRDRY
RDDVRRYAKELLKAAHGECRDRASLKDFVALVNRDGSGATTKVVVDTTAL
LGELRRAFGDLPREVSASRVSWLQEPVFFLRLRDDKGGSSSGHDSSVPSS
S
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mRNA from alignment at P-lacustris_contig1107:32665..33250+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1107.890.1 ID=mRNA_P-lacustris_contig1107.890.1|Name=mRNA_P-lacustris_contig1107.890.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=586bp|location=Sequence derived from alignment at P-lacustris_contig1107:32665..33250+ (Pleurocladia lacustris SAG_25_93)
CCAGGCGGGCCCATCGTCTCCTGCGCCGCTGCCGGTGCACGCCGCTTCGT
TGTCGCCCGCGCCCGCTGCCGCCGCCGCCGCCGCCCCCCCGGTTTCATGA
GGGGCGCGGGATTTTGTCATCCCGAAGAAGAAGATGCCGCCGCTACGGCT
AGCCACGGGGACCGCATCCTGGCACGGAGCTGGAGCGCCGGTGCTCGCCA
TCAAAGACGGCGATGAACACTTCTGTACTGTCCCGCTCGCACAAATCGCC
GACTCCAGATGCGCGGACTTGCGCGACCGCTACCGCGATGACGTTCGGCG
GTACGCGAAAGAGCTGCTGAAAGCTGCCCACGGAGAGTGCAGGGACCGCG
CCTCGCTCAAGGACTTTGTGGCGCTGGTGAATCGTGACGGCAGTGGGGCG
ACTACGAAGGTGGTGGTCGACACTACCGCGCTCCTTGGAGAACTGCGCCG
GGCTTTTGGCGATCTCCCTCGAGAAGTATCGGCGTCTCGCGTGTCCTGGT
TGCAGGAACCCGTGTTTTTCCTGCGGCTGCGCGATGACAAGGGTGGCTCG
TCGTCCGGCCACGACAGCTCTGTCCCGTCTTCGTCT
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Coding sequence (CDS) from alignment at P-lacustris_contig1107:32665..33250+

>mRNA_P-lacustris_contig1107.890.1 ID=mRNA_P-lacustris_contig1107.890.1|Name=mRNA_P-lacustris_contig1107.890.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=906bp|location=Sequence derived from alignment at P-lacustris_contig1107:32665..33250+ (Pleurocladia lacustris SAG_25_93)
ATGCCGCCGCTACGGCTAGCCACGGGGACCGCATCCTGGCACGGAGCTGG
AGCGCCGGTGCTCGCCATCAAAGACGGCGATGAACACTTCTGTACTGTCC
CGCTCGCACAAATCGCCGACTCCAGATGCGCGGACTTGCGCGACCGCTAC
CGCGATGACGTTCGGCGGTACGCGAAAGAGCTGCTGAAAGCTGCCCACGG
AGAGTGCAGGGACCGCGCCTCGCTCAAGGACTTTGTGGCGCTGGTGAATC
GTGACGGCAGTGGGGCGACTACGAAGGTGGTGGTCGACACTACCGCGCTC
CTTGGAGAACTGCGCCGGGCTTTTGGCGATCTCCCTCGAGAAGTATCGGC
GTCTCGCGTGTCCTGGTTGCAGGAACCCGTGTTTTTCCTGCGGCTGCGCG
ATGACAAGGGTGGCTCGTCGTCCGGCCACGACAGCTCTGTCCCGTCTTCG
TCTATGCCGCCGCTACGGCTAGCCACGGGGACCGCATCCTGGCACGGAGC
TGGAGCGCCGGTGCTCGCCATCAAAGACGGCGATGAACACTTCTGTACTG
TCCCGCTCGCACAAATCGCCGACTCCAGATGCGCGGACTTGCGCGACCGC
TACCGCGATGACGTTCGGCGGTACGCGAAAGAGCTGCTGAAAGCTGCCCA
CGGAGAGTGCAGGGACCGCGCCTCGCTCAAGGACTTTGTGGCGCTGGTGA
ATCGTGACGGCAGTGGGGCGACTACGAAGGTGGTGGTCGACACTACCGCG
CTCCTTGGAGAACTGCGCCGGGCTTTTGGCGATCTCCCTCGAGAAGTATC
GGCGTCTCGCGTGTCCTGGTTGCAGGAACCCGTGTTTTTCCTGCGGCTGC
GCGATGACAAGGGTGGCTCGTCGTCCGGCCACGACAGCTCTGTCCCGTCT
TCGTCT
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