mRNA_P-lacustris_contig11.826.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig11.826.1
Unique NamemRNA_P-lacustris_contig11.826.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: A0A6H5KN60_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE)

HSP 1 Score: 501 bits (1291), Expect = 6.210e-174
Identity = 262/341 (76.83%), Postives = 283/341 (82.99%), Query Frame = 1 
Query:  103 MPRRALPASCLRACSSSPSPLRCLAMFAALPWSSNGLRSIS---GVSRTRVDTTVAGGVATAAVRKVGEVQVEATPPWLGNGPDPMANTASIRPGRPS----APVGQAGAKRKGIAAGEVWLNGPFIAPQPPGPLEILYVDDDIVVCNKPSNLLCVPGRLEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            MPRRA PA  L   SSSP  LRCL +  A  W S+G RSIS   G +R  V TT A      A  +V EVQVE  P WLGNGPDPMA+T  IRPG  +    A VG+ G K KG+AA E+WLNGPF AP PPGPL+IL+VD++IVVCNKPS+LLCVPGR+EKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMAR+DAALKDLNRQFRER+VRKRYVAMVHGVLWADEGEVDLPL RN GCPPLHMVN EHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHM+AIGHPILGDHFYGT +SL LADRC LHAHTLC+RHP  GERTMFTAPC+F
Sbjct:    1 MPRRAQPAGVL---SSSPGRLRCLTVLTAA-WGSHGFRSISSCNGGTRVHVATTAA------ATNEVREVQVEERP-WLGNGPDPMASTGKIRPGTSASLGAAVVGEPGGKGKGVAAEEMWLNGPFNAPVPPGPLDILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAMVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: D8LR37_ECTSI (Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI)

HSP 1 Score: 443 bits (1139), Expect = 4.950e-152
Identity = 215/256 (83.98%), Postives = 235/256 (91.80%), Query Frame = 1 
Query:  349 MANTASIRPGRPS----APVGQAGAKRKGIAAGEVWLNGPFIAPQPPGPLEILYVDDDIVVCNKPSNLLCVPGRLEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            MA+T  +RPG  +    A VG+AG K KG+AA E+WLNGPF AP PPGPLEIL+VD++IVVCNKPS+LLCVPGR+EKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMAR+DAALKDLNRQFRER+VRKRYVA+VHGVLWADEGEVDLPL RN GCPPLHMVN EHGKPSLTKWRVL+RAADRTRVELIPVSGRSHQLRLHM+AIGHPILGDHFYGT++SLALA RC LHAHTLC+RHP  GERTMFTAPC+F
Sbjct:    1 MASTGQVRPGTSASLGAAVVGEAGGKGKGVAAEEMWLNGPFNAPVPPGPLEILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDLNRQFRERQVRKRYVAIVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: A0A836CD05_9STRA (Pseudouridylate synthase, 23S RNA-specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD05_9STRA)

HSP 1 Score: 216 bits (551), Expect = 6.310e-64
Identity = 111/214 (51.87%), Postives = 141/214 (65.89%), Query Frame = 1 
Query:  478 GPLEILYVDDDIVVCNKPSNLLCVPGRLEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLER-----AADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            GP++++Y DD I+VCNKPS LL VPG   KD L +R A++ G  R+D+M+VHRLD ATSG V+ AR+D AL+ L+  FR R+V K Y A+V+G +  D GEV  P+ ++   PPL +++   GKP  T W VL R      AD TRV L PV+GRSHQLRLHM  +GHPILGD  Y  + + ALA RC LHA TL  RHP  GE   F  P +F
Sbjct:   14 GPVDVVYSDDHIIVCNKPSGLLSVPGITLKDCLVSRVAVKFGQARIDKMVVHRLDQATSGLVLFARTDEALRALHEDFRLRRVSKCYEAVVYGSVAGDSGEVTEPMRKDMDNPPLQLIDHVQGKPCQTLWSVLSRETRGGGADATRVALTPVTGRSHQLRLHMQVLGHPILGDDLYAHAAARALAPRCLLHARTLRFRHPATGEDLSFEVPPEF 227
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: UPI000371F359 (RluA family pseudouridine synthase n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI000371F359)

HSP 1 Score: 208 bits (529), Expect = 9.190e-61
Identity = 114/210 (54.29%), Postives = 142/210 (67.62%), Query Frame = 1 
Query:  481 PLEILYVDDDIVVCNKPSNLLCVPGRLEK--DSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            PL+I++VDDDI+V NKP+ LL VPGR E+  D LATRA  E    R    IVHRLDM TSG +IMAR   AL+ L RQF +RK  K Y A+++G L  DEGEVDLPL  +    P H V+ E+GKP+ T+++V+ER    TRV L PV+GRSHQLR+HM ++GH I+GD+ Y   E+  LADR  LHA  L V HP +GE   FTAP  F
Sbjct:   15 PLDIIHVDDDILVLNKPNGLLSVPGRTEEKFDCLATRAEAEFTGVR----IVHRLDMETSGVIIMARHMDALRHLGRQFEDRKTDKVYEALIYGNLARDEGEVDLPLLVDWPNRPKHRVDFENGKPAFTRYKVIERTEKTTRVALYPVTGRSHQLRVHMLSLGHAIIGDNLYAEGEAFTLADRLCLHARELTVTHPESGESLTFTAPVPF 220
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: A0A369WRJ6_9GAMM (Pseudouridine synthase n=1 Tax=Motiliproteus coralliicola TaxID=2283196 RepID=A0A369WRJ6_9GAMM)

HSP 1 Score: 207 bits (527), Expect = 1.160e-60
Identity = 108/209 (51.67%), Postives = 146/209 (69.86%), Query Frame = 1 
Query:  484 LEILYVDDDIVVCNKPSNLLCVPGR--LEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            +E+LY DD +V+  KP++LL VPGR    +D L  R   E    R    IVHRLD ATSG +++A    + ++L+RQF +R+ RKRY+A+V G L   +G V+LPL  +    P  MV+ + GKP+LT++R+L++A DR+RVELIP++GRSHQLR+HM A+GHPILGD FY T  +LA ADR  LHA  L +RHP++GER  FTAPC F
Sbjct:    2 IEVLYQDDSLVIAVKPADLLSVPGRGPENQDCLLHRLQSEFPTAR----IVHRLDCATSGVMVLALDADSHRELSRQFHDRETRKRYIAVVDGTLKQHQGRVELPLRCDWPNRPKQMVDHDQGKPALTEYRLLDQADDRSRVELIPITGRSHQLRVHMQALGHPILGDRFYATPSALAKADRLNLHAEQLGIRHPVSGERMEFTAPCPF 206
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: A0A291HLR0_9GAMM (Pseudouridine synthase n=4 Tax=Zobellella denitrificans TaxID=347534 RepID=A0A291HLR0_9GAMM)

HSP 1 Score: 205 bits (522), Expect = 1.100e-59
Identity = 109/208 (52.40%), Postives = 141/208 (67.79%), Query Frame = 1 
Query:  487 EILYVDDDIVVCNKPSNLLCVPGR--LEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            E+LY D+ ++V NKPS LL VPGR  + +DSL+ R A      +V    VHRLDMATSG ++MA    A ++L+RQFRER+  KRY A VHG L  D G +DLPL  +    P HMV++EHGKP+LT WR L R  DR+ VEL P++GRSHQLR+HM ++GHPILGD+ Y + E+LA+A   QLHA  L  RHP + +   F+AP  F
Sbjct:   15 EVLYQDNSLIVLNKPSGLLSVPGRELIHRDSLSYRVARVYPGVQV----VHRLDMATSGVIVMALHPKAHRELSRQFRERETAKRYYAWVHGRLEQDAGSIDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPDRSLVELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALAMAPHLQLHAAWLAFRHPRSKQWLEFSAPAPF 218
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: A0A2P7QL36_9GAMM (Pseudouridine synthase n=1 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QL36_9GAMM)

HSP 1 Score: 200 bits (508), Expect = 1.290e-57
Identity = 107/208 (51.44%), Postives = 138/208 (66.35%), Query Frame = 1 
Query:  487 EILYVDDDIVVCNKPSNLLCVPGR--LEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            E+LY D+ ++V NKPS LL VPGR  + +DSL+ R A        D  +VHRLDMATSG ++MA    A ++L+RQFRER+  KRY A V+G   AD G VDLPL  +    P HMV++EHGKP+LT WR L R   R+ +EL P++GRSHQLR+HM ++GHPILGD+ Y + E+L +A + QLHA  L  RHP       FTAP  F
Sbjct:   15 EVLYQDNSLIVLNKPSGLLSVPGREAVHRDSLSYRVA----RVYPDVQVVHRLDMATSGVIVMALHPKAHRELSRQFRERETEKRYYAWVYGSPAADAGSVDLPLCCDWPNRPRHMVSLEHGKPALTHWRCLRREPGRSLLELTPITGRSHQLRVHMLSLGHPILGDNLYASGEALTMAPQLQLHAAHLAFRHPRYRHWLEFTAPAPF 218
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: A0A6I1E9Q1_9RHOB (Pseudouridine synthase n=1 Tax=Amylibacter sp. SFDW26 TaxID=2652722 RepID=A0A6I1E9Q1_9RHOB)

HSP 1 Score: 199 bits (505), Expect = 3.240e-57
Identity = 111/221 (50.23%), Postives = 137/221 (61.99%), Query Frame = 1 
Query:  448 NGPFIAPQPPGPLEILYVDDDIVVCNKPSNLLCVPGRL--EKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            N PFI   P   L++L++DD I+  NKPS LL VPG+    +D L TR          D ++VHRLDM TSG +I  R+  A K +  QF +R ++K Y+A V GV+  D G VDLPL  +    PL  V  E GKPS+T W VLER  D TR+EL P +GRSHQLR+HM  IGH ILGD FYGT   +A A+R QLHA+ L +RHP  GE    TAPC F
Sbjct:    4 NPPFIYDPPLDDLDVLHIDDQILAVNKPSGLLSVPGKALEHRDCLETRVKAAYP----DALLVHRLDMDTSGVMIFGRTPHAQKHIGGQFAKRYLKKTYIARVDGVIAEDTGTVDLPLIVDWPNRPLQKVCNETGKPSITHWTVLERETDATRIELKPETGRSHQLRVHMLKIGHTILGDRFYGTDAVIAKAERLQLHAYDLSLRHPDGGEWLTITAPCPF 220
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: A0A371RL31_9PROT (RNA pseudouridine synthase n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371RL31_9PROT)

HSP 1 Score: 197 bits (502), Expect = 8.180e-57
Identity = 100/207 (48.31%), Postives = 134/207 (64.73%), Query Frame = 1 
Query:  484 LEILYVDDDIVVCNKPSNLLCVPGRLEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            L++LY DD ++V NK + LL VPG + +DSL TRAA   G+     ++ HRLDMATSG ++M R    L  +  QF +R+  KRY+A+V G +  D+G VDLP+  +    PL M+  E G+P++T W VL R  D+TR+ L P++GRSHQLRLHM  +GHPILGD +Y   E+ A + R  LHA  L + HP  GER  FTAPC F
Sbjct:   15 LDVLYGDDALIVLNKQAGLLSVPGNVSRDSLETRAAERFGN----TLVAHRLDMATSGVIVMPRGKENLAAVGLQFEKRQTEKRYIAVVWGDVAEDKGTVDLPIRCDWPNRPLQMICHERGRPAVTHWEVLTREGDKTRLALTPITGRSHQLRLHMKELGHPILGDEWYADGEARAASPRLLLHAEVLTLTHPANGERMSFTAPCPF 217
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BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Match: V4N4Z6_9CAUL (Pseudouridine synthase n=1 Tax=Asticcacaulis sp. YBE204 TaxID=1282363 RepID=V4N4Z6_9CAUL)

HSP 1 Score: 197 bits (500), Expect = 1.100e-56
Identity = 111/206 (53.88%), Postives = 138/206 (66.99%), Query Frame = 1 
Query:  493 LYVDDDIVVCNKPSNLLCVPGRL--EKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLNRQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSESLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF 1104
            LY DD ++V +KP+ LL VPGRL   KDSLA R          D +IVHRLDMATSG ++MAR   A + L+  F ER+V KRYVA+V G +  +EGEVDLPL  +    P  M++   GKPSLT++RV+ R ADRTRVEL PV+GRSHQLR+HM A+GHPI+GD FY  +E  AL+ R  LHA  L + HP+ GE   F AP  F
Sbjct:    4 LYEDDALLVFDKPAGLLSVPGRLPENKDSLAPRVQA----IWPDALIVHRLDMATSGLIVMARGAEAHRTLSIAFAERRVHKRYVAVVAGQVRDEEGEVDLPLITDWPNRPKQMIDYTIGKPSLTRYRVIAREADRTRVELEPVTGRSHQLRVHMMALGHPIIGDVFYAPTEIQALSSRLWLHAERLDLPHPVTGEALRFEAPAAF 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig11.826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN60_9PHAE6.210e-17476.83PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D8LR37_ECTSI4.950e-15283.98Pseudouridylate synthases, 23S RNA-specific n=1 Ta... [more]
A0A836CD05_9STRA6.310e-6451.87Pseudouridylate synthase, 23S RNA-specific n=1 Tax... [more]
UPI000371F3599.190e-6154.29RluA family pseudouridine synthase n=1 Tax=Kordiim... [more]
A0A369WRJ6_9GAMM1.160e-6051.67Pseudouridine synthase n=1 Tax=Motiliproteus coral... [more]
A0A291HLR0_9GAMM1.100e-5952.40Pseudouridine synthase n=4 Tax=Zobellella denitrif... [more]
A0A2P7QL36_9GAMM1.290e-5751.44Pseudouridine synthase n=1 Tax=Zobellella taiwanen... [more]
A0A6I1E9Q1_9RHOB3.240e-5750.23Pseudouridine synthase n=1 Tax=Amylibacter sp. SFD... [more]
A0A371RL31_9PROT8.180e-5748.31RNA pseudouridine synthase n=1 Tax=Parvularcula ma... [more]
V4N4Z6_9CAUL1.100e-5653.88Pseudouridine synthase n=1 Tax=Asticcacaulis sp. Y... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig11contigP-lacustris_contig11:375657..380097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score448.0
Seed ortholog evalue4e-123
Seed eggNOG ortholog2880.D8LR37
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
Ec32 ortholog descriptionPseudouridine synthase, RsuA/RluB/C/D/E/F
Ec32 orthologEc-06_004490.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1530
Cds size1005
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig11.826.1prot_P-lacustris_contig11.826.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig11 375759..379674 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.1474361-UTR-P-lacustris_contig11:375656..3757581622815385.1474361-UTR-P-lacustris_contig11:375656..375758Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 375657..375758 +
1693493513.637463-UTR-P-lacustris_contig11:375656..3757581693493513.637463-UTR-P-lacustris_contig11:375656..375758Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 375657..375758 +
1622815385.2456806-UTR-P-lacustris_contig11:379674..3800971622815385.2456806-UTR-P-lacustris_contig11:379674..380097Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 379675..380097 +
1693493513.718007-UTR-P-lacustris_contig11:379674..3800971693493513.718007-UTR-P-lacustris_contig11:379674..380097Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig11 379675..380097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815385.1619613-CDS-P-lacustris_contig11:375758..3761421622815385.1619613-CDS-P-lacustris_contig11:375758..376142Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 375759..376142 +
1693493513.6496365-CDS-P-lacustris_contig11:375758..3761421693493513.6496365-CDS-P-lacustris_contig11:375758..376142Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 375759..376142 +
1622815385.178053-CDS-P-lacustris_contig11:376975..3770731622815385.178053-CDS-P-lacustris_contig11:376975..377073Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 376976..377073 +
1693493513.6586683-CDS-P-lacustris_contig11:376975..3770731693493513.6586683-CDS-P-lacustris_contig11:376975..377073Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 376976..377073 +
1622815385.191149-CDS-P-lacustris_contig11:377641..3777651622815385.191149-CDS-P-lacustris_contig11:377641..377765Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 377642..377765 +
1693493513.6678689-CDS-P-lacustris_contig11:377641..3777651693493513.6678689-CDS-P-lacustris_contig11:377641..377765Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 377642..377765 +
1622815385.2021997-CDS-P-lacustris_contig11:378674..3788321622815385.2021997-CDS-P-lacustris_contig11:378674..378832Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 378675..378832 +
1693493513.6778133-CDS-P-lacustris_contig11:378674..3788321693493513.6778133-CDS-P-lacustris_contig11:378674..378832Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 378675..378832 +
1622815385.2170465-CDS-P-lacustris_contig11:379257..3793301622815385.2170465-CDS-P-lacustris_contig11:379257..379330Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 379258..379330 +
1693493513.6863015-CDS-P-lacustris_contig11:379257..3793301693493513.6863015-CDS-P-lacustris_contig11:379257..379330Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 379258..379330 +
1622815385.2329996-CDS-P-lacustris_contig11:379506..3796741622815385.2329996-CDS-P-lacustris_contig11:379506..379674Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 379507..379674 +
1693493513.6957128-CDS-P-lacustris_contig11:379506..3796741693493513.6957128-CDS-P-lacustris_contig11:379506..379674Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig11 379507..379674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig11.826.1

>prot_P-lacustris_contig11.826.1 ID=prot_P-lacustris_contig11.826.1|Name=mRNA_P-lacustris_contig11.826.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=335bp
MPRRALPASCLRACSSSPSPLRCLAMFAALPWSSNGLRSISGVSRTRVDT
TVAGGVATAAVRKVGEVQVEATPPWLGNGPDPMANTASIRPGRPSAPVGQ
AGAKRKGIAAGEVWLNGPFIAPQPPGPLEILYVDDDIVVCNKPSNLLCVP
GRLEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARSDAALKDLN
RQFRERKVRKRYVAMVHGVLWADEGEVDLPLSRNTGCPPLHMVNIEHGKP
SLTKWRVLERAADRTRVELIPVSGRSHQLRLHMDAIGHPILGDHFYGTSE
SLALADRCQLHAHTLCVRHPIAGERTMFTAPCDF*
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mRNA from alignment at P-lacustris_contig11:375657..380097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig11.826.1 ID=mRNA_P-lacustris_contig11.826.1|Name=mRNA_P-lacustris_contig11.826.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4441bp|location=Sequence derived from alignment at P-lacustris_contig11:375657..380097+ (Pleurocladia lacustris SAG_25_93)
AGGACACACACGACGACACGACGTGAGAGGAGCGAGAGGTGCCACCCGTT
TCTCATCATACCCGTATCGAGCAGCTGTAACTGGCTGTTTTACGTAACGA
TAATGCCTCGAAGAGCACTCCCAGCAAGTTGTTTAAGAGCGTGCTCTTCC
TCGCCAAGCCCGTTGCGTTGTCTCGCCATGTTCGCAGCTTTGCCATGGAG
TTCAAATGGCCTTCGATCGATCAGCGGCGTGAGCAGGACCCGCGTGGATA
CCACGGTCGCGGGAGGTGTTGCAACGGCTGCTGTACGCAAAGTAGGGGAG
GTGCAGGTAGAGGCGACACCGCCGTGGCTTGGTAATGGTCCAGATCCAAT
GGCGAACACTGCAAGTATTCGACCAGGGAGACCAAGCGCTCCCGTAGGTC
AAGCAGGAGCGAAGAGAAAGGGAATCGCTGCCGGGGAGGTGTGGCTAAAC
GGTCCGTTCATAGCTCCCCAGCCGCCAGGACCCTTGGTGAGTGACGGCTT
GATGAGGGTGCTCCATGAACGCCAGCAGCATACGTACGCATTCGCAATCA
TTGCCGTAGTCTACAGACTCACTTAGCCGGCAACAACACGACCCACTGAC
CAAGCTCGTTACCCACTGACCAAGAGCAGCGCCCGTTGGAGGTGGTCGCT
TGTGGCGTGGCATGCTTCTATCACCGCCTACTACTCTGTAATTTTGTTTG
TCAGCAATTGTGGTTTTTATTTCTCTTGTGCGCTGCTCCTCTGCTGTTCT
CTCGCAGCTGTTTGAGGCAAAGGTAACATGCACCATCATCCGCGTTGAAA
CGCTGCTAGAATTGAGTTTTTCGAAAACTTGGTACCGTACTGTAGACTAA
CATGCTTCACCACAACAACAACGTTACCCACTGACCAAGCTCGTTACCCA
CTGACCAAGAGCAGCGCCCGTTGGAGGTGGTCGCTTGTGGCGTGGCATGC
TTCTATCACCGCCTACTACTCTGTAATTTTGTTTGTCAGCAATTGTGGTT
TTTCAAAAACGTTACCCACTGACCAAGCTCGTTACCCACTGACCAAGAGC
AGCGCCCGTTGGAGGTGGTCGCTTGTGGCGTGGCATGCTTCTATCACCGC
CTACTACTCTGCAATTTTGTTTGTCAGCAATTGTGGTTTTTATTTCTCTT
GTGCGCGCTGCTCCTCTGCTGTTCTCTCTCGCAGCTGTTTGAGGCAAAGG
TAACATGCACCACCATCCGCGTTGAAACGCTGCTAGAATTGAGTTTTTCG
AAAACTTGGTACCGTACTGTAGACTAACATGGTTCACCACGTGTTTGGGC
TCACTCGCGGGTGATCCAGGAAATTTTGTACGTGGACGATGACATCGTGG
TTTGCAACAAGCCAAGCAATCTGCTCTGTGTTCCGGGCCGGCTTGAGAAG
GACTCGCTGGCTACAAGGTTCGTCCACCGCCGAATTTTTCGCACCAAACG
TGTCTTTCCCTTGTTGCACATTAGCGGTTCTGTGGGCGATTGCTTTTCTC
GAATCACATAGCCACACCGTCGCTAGGGTTACGGGGACGTTGGTACTCGC
TGTATGTTGGCTTCAGATTCAAAGATGACTTTTTGGGTGCTGTTATGCAC
TCTTAGACGTAAAGCAAAGTTAAACGCTATGGTCGCGGCGCCACTCTCGA
CTCCCGCTGCACGCTCAAGGTGTCGATATCGTTGCGAATACTGAAGGCAA
ACTCCGTAAAGCACCATATACGTACCGCATAGTCCTGCTGCCAAGCACCA
CCGCAGCGTTAGCTACAACTTCAACTGCAAGTTCAATCGCGTTGACTCTT
CGCTAGCGGTGTGTCTAGGAAACAACAAGAAGGCCGACTGGTTCTCCTTT
ACTCCGGAGAGAAACGAACCTTTTGGGATTTATGCTCGCACAGTAATCTA
CGTTTCAGTTCGTGAAGGAGCTTAGTGCTGGCTAAACATTTCGGGTTCTT
GCTTCGATGACCGCCACTTGTGGTCGCTGCCGCAGGGCTGCCCTCGAGCT
GGGACACTACCGGGTGGACAGAATGATCGTCCACCGCCTAGACATGGCCA
CCTCTGGCTGCGTGATCATGGCCCGCTCGGACGCAGCTCTCAAGGACCTC
AACCGCCAGGTAACTTGCAACTTTGTGTTGATGTCCGATGACGGTTCTTG
TGCAGTACCGTAATAGTGCTTAAGTTGGCACCGGGTGCGATTGCGTTTTT
AAATCATTGCATTTCCGATTTTTTTGCGCACCCTCGGTGCCATAACCCCG
ATGGGTGCCGTATCCGCGATACCGGTGCGGAGTTCGAATTGAATCATTTC
TTTCTCGTTTTTTTGCGCACCCCAGTGCCATATCCCCGATGGGTGCGATG
CCGAACGAATATACAACGGCCTCACCGGTGCCGCCACGCTGCTGTACATA
CCCGATTCAGCCCAAAAAGTGGCACGGGGCGACTGCGATAGCACGCGATC
ATGGACAAACTCGACTCATTTCAATGCGTGGACCGCGACGGCGCAATGGT
ATATAATAGGAGCGCCCCGATTATTCCTAACCGCTCGCAAAAGGTACCGT
AATTGCATACCAGATACATTTCAAATATGGCCGGAGTTGAGGCGGTAGCA
AGTCGTCTTGGATTTATATCGGGGTTACCGCACCGGGTGCCATATCCGCG
ATACCGGTGCAGAAATCGAATTAAATCATGACATTTCGGATTTTTGCGCA
CCCCTGGTGCCATATCCCCGACGGGTGCCAACTCCGCGATGGGTGCCAAC
TTAAGCACTTTCACGGTAGGTAAAGACTCCGCATTTCCTTCTACCCGCCG
CTAAGCAGTGCGGTGTGTTTCTCCTCTTGAGGCATCCACGGGCCAAATGG
GTTTCGCGCGCTGCGCGGTGAGCTTCTGTGTTACGGATACGCTAAGTCAG
CGCGGACTTCGTTCTCGTGTTCTGTGCGTCCCTCGGGGTTCTTTCATGCT
ACTGTTCACATACAATTACTTATCGTGTACTCTATTCCCGTGCCTGCCAC
TGGCGCGTTGAACGTTAGTTTCGAGAGCGCAAGGTGCGGAAGCGATACGT
TGCGATGGTGCACGGCGTCCTTTGGGCGGACGAGGGAGAGGTTGACCTTC
CGCTTTCCAGAAATACGGGTTGCCCCCCGCTTCACATGGTCAACATCGAG
CACGGGAAGCCATCGCTCACAAAATGGTGAGGACGACATGGTGGCGCAAC
ATGGCATAGAGTTTGCGCAAACCACCAGTTGGCAAACGCCTAGTAGCGGT
AGACATCGCTTGGTGACCTCGGTCGTCGCGGCTGTGGTAGAGTAGCTGCA
AAGTAGCAAGCATTTTCCCGCCTTGTGAGAGGGCACCGCACACGACGAGT
TGTAGGCGGTATTTTCTCGTGTCCTCGCGGTTCATGGCCCTTGCAAGAAA
GTCCGTGATGAAGCTGTCTGCAGTAACGACCACCACGGTTTGGGTGTTTT
TCGTGCCGCAGGCGATGGGACAGGACATGGTGCGTGTGCAACGTGACAAC
TCAAAAAACAAAGTAACCACCCCCCGATGACTCAATCCTCCGCATGCACG
TGCAACCTTGTGGCATCATCCCATGGTCAATGCTGGGACCGACAACATAA
GGCGGGTCCTGGAGAGGGCTGCCGACCGTACGAGAGTTGAACTCATTCCC
GTATCAGGCCGTTCCCACCAGCTGGTGAGTGGGAGAAGAAGTGGGTGATA
TATACACATGCTTGTGAACATTGTCACGTCTGAGGTTTTGTTCTGCTCAC
AAACTTCTACGCCCTGGTACGTCGTGGACAAAGCTAAGAGTTTTCGCTGA
AAGCCACCAAATCCGTGATATTTTCGCCGTTTGTGTTTCCCTCTGGACAG
CGACTTCACATGGATGCAATAGGCCATCCCATCCTCGGGGACCACTTCTA
CGGCACAAGCGAGTCCCTCGCCCTCGCGGATCGGTGCCAGCTGCACGCGC
ACACGCTGTGCGTTCGACACCCGATAGCGGGGGAGAGAACCATGTTTACC
GCTCCGTGCGACTTTTGAGCTTTGAGCTCTCACGGTCTACGGCTGTTACT
TTTTGTTGGCAGCAATTCGCGCTGTGTGACGCGGTCGTTGGGGGTGGGTA
TAAACCAGCCCTGCCTCATCATTTTAGCGTCTTTGGTGTGGTAGCCTGCT
GCTTGTTTTCATCTATTGCGTCTGGTTCACCTTCACGGATGGTCAGTACT
AATCGGTACTCAACATGCTCAGCAAATGGCTTGTGAGCGACGTGGTATCT
TTTCTTGTTCCGCCGCGCATTTTGTTCGCGTGTTTTCGTATGTTTTTTCG
CATGTTTCGCATTTTAAGGCACTTGCACACACCTGCACTCTTTACTGCTG
GTGTTGTCTTTTCAGGCCGTTTTTTTTCAGAGCAAAGGCAGCAAAAACAT
ATTGTCGGCGTCCGTATAAAATGGTATCCAGGAGTTTCCGC
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Coding sequence (CDS) from alignment at P-lacustris_contig11:375657..380097+

>mRNA_P-lacustris_contig11.826.1 ID=mRNA_P-lacustris_contig11.826.1|Name=mRNA_P-lacustris_contig11.826.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2010bp|location=Sequence derived from alignment at P-lacustris_contig11:375657..380097+ (Pleurocladia lacustris SAG_25_93)
ATGCCTCGAAGAGCACTCCCAGCAAGTTGTTTAAGAGCGTGCTCTTCCTC
GCCAAGCCCGTTGCGTTGTCTCGCCATGTTCGCAGCTTTGCCATGGAGTT
CAAATGGCCTTCGATCGATCAGCGGCGTGAGCAGGACCCGCGTGGATACC
ACGGTCGCGGGAGGTGTTGCAACGGCTGCTGTACGCAAAGTAGGGGAGGT
GCAGGTAGAGGCGACACCGCCGTGGCTTGGTAATGGTCCAGATCCAATGG
CGAACACTGCAAGTATTCGACCAGGGAGACCAAGCGCTCCCGTAGGTCAA
GCAGGAGCGAAGAGAAAGGGAATCGCTGCCGGGGAGGTGTGGCTAAACGG
TCCGTTCATAGCTCCCCAGCCGCCAGGACCCTTGATGCCTCGAAGAGCAC
TCCCAGCAAGTTGTTTAAGAGCGTGCTCTTCCTCGCCAAGCCCGTTGCGT
TGTCTCGCCATGTTCGCAGCTTTGCCATGGAGTTCAAATGGCCTTCGATC
GATCAGCGGCGTGAGCAGGACCCGCGTGGATACCACGGTCGCGGGAGGTG
TTGCAACGGCTGCTGTACGCAAAGTAGGGGAGGTGCAGGTAGAGGCGACA
CCGCCGTGGCTTGGTAATGGTCCAGATCCAATGGCGAACACTGCAAGTAT
TCGACCAGGGAGACCAAGCGCTCCCGTAGGTCAAGCAGGAGCGAAGAGAA
AGGGAATCGCTGCCGGGGAGGTGTGGCTAAACGGTCCGTTCATAGCTCCC
CAGCCGCCAGGACCCTTGGAAATTTTGTACGTGGACGATGACATCGTGGT
TTGCAACAAGCCAAGCAATCTGCTCTGTGTTCCGGGCCGGCTTGAGAAGG
ACTCGCTGGCTACAAGGAAATTTTGTACGTGGACGATGACATCGTGGTTT
GCAACAAGCCAAGCAATCTGCTCTGTGTTCCGGGCCGGCTTGAGAAGGAC
TCGCTGGCTACAAGGGCTGCCCTCGAGCTGGGACACTACCGGGTGGACAG
AATGATCGTCCACCGCCTAGACATGGCCACCTCTGGCTGCGTGATCATGG
CCCGCTCGGACGCAGCTCTCAAGGACCTCAACCGCCAGGGCTGCCCTCGA
GCTGGGACACTACCGGGTGGACAGAATGATCGTCCACCGCCTAGACATGG
CCACCTCTGGCTGCGTGATCATGGCCCGCTCGGACGCAGCTCTCAAGGAC
CTCAACCGCCAGTTTCGAGAGCGCAAGGTGCGGAAGCGATACGTTGCGAT
GGTGCACGGCGTCCTTTGGGCGGACGAGGGAGAGGTTGACCTTCCGCTTT
CCAGAAATACGGGTTGCCCCCCGCTTCACATGGTCAACATCGAGCACGGG
AAGCCATCGCTCACAAAATGTTTCGAGAGCGCAAGGTGCGGAAGCGATAC
GTTGCGATGGTGCACGGCGTCCTTTGGGCGGACGAGGGAGAGGTTGACCT
TCCGCTTTCCAGAAATACGGGTTGCCCCCCGCTTCACATGGTCAACATCG
AGCACGGGAAGCCATCGCTCACAAAATGGCGGGTCCTGGAGAGGGCTGCC
GACCGTACGAGAGTTGAACTCATTCCCGTATCAGGCCGTTCCCACCAGCT
GGCGGGTCCTGGAGAGGGCTGCCGACCGTACGAGAGTTGAACTCATTCCC
GTATCAGGCCGTTCCCACCAGCTGCGACTTCACATGGATGCAATAGGCCA
TCCCATCCTCGGGGACCACTTCTACGGCACAAGCGAGTCCCTCGCCCTCG
CGGATCGGTGCCAGCTGCACGCGCACACGCTGTGCGTTCGACACCCGATA
GCGGGGGAGAGAACCATGTTTACCGCTCCGTGCGACTTTTGACGACTTCA
CATGGATGCAATAGGCCATCCCATCCTCGGGGACCACTTCTACGGCACAA
GCGAGTCCCTCGCCCTCGCGGATCGGTGCCAGCTGCACGCGCACACGCTG
TGCGTTCGACACCCGATAGCGGGGGAGAGAACCATGTTTACCGCTCCGTG
CGACTTTTGA
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