mRNA_P-lacustris_contig1092.761.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A6H5KW13_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW13_9PHAE) HSP 1 Score: 107 bits (267), Expect = 6.110e-21 Identity = 70/206 (33.98%), Postives = 110/206 (53.40%), Query Frame = 1
Query: 760 ALGPESRTNFVKVLDLLHKHNQGGLFPENPKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLNNLLK--VRGLETSLPIMIGCTGASSSPS*PYLRHTASCRSKRRTATKQHFEMRQADYGKHVLQLRPPDDPGSVFSAAWRHQTASDILLHSRTLE 1371
ALGPES +V+D+L++ FP+N K++ ++EGREV+LP+ DEN P ACKA+R SP +DI+ +++ EAG++ TS WCA +V K +G +RLC D+R LN LL+ + GL + + G+ ++ +S K + ++R A +H LR P ++ + D+ LHS T E
Sbjct: 898 ALGPESHQ---RVIDMLNEIK--AFFPKNTKLINVIEGREVTLPLYDENVKPFACKAQRISPHMSDILMKQINDMLEAGILSFSTSEWCARIVPVLKKDGTYRLCIDFRELNKLLQKNINGLGDIVGMYDRMKGS---------KYFSSIDLK-----SAYHQLRVAQKNRHRTALRDPTGRLLQWNGKGVEKWLDDMGLHSATFE 1084
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A6H5JF70_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF70_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.020e-20 Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1
Query: 766 GPESRTNFVKVLDLLHKHNQGGLFPENPKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLNNLLK 1107
G S ++L LL+K LFP+N K+V + GR+V LP+IDE+ TP+ACKA+R SP ADI+ ++ AG R TSSWC+ +V PKS+G +R+C DYR LN L+K
Sbjct: 42 GQTSPATRERLLKLLYKFRS--LFPKNTKVVKIKHGRKVGLPLIDEDVTPIACKAQRWSPPMADILMKQLNQGLAAGTFRLSTSSWCSRIVPVPKSDGTYRICIDYRDLNKLIK 153
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE) HSP 1 Score: 104 bits (259), Expect = 4.810e-20 Identity = 71/201 (35.32%), Postives = 102/201 (50.75%), Query Frame = 1
Query: 829 GLFPENPKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLNNLLKVR--GLETSLPIMIGCTGAS--SSPS*PYLRHTASCRSKRRTATK------QHFEMRQADYGKHVLQ----------LRPPDDPGSVFSAAWRHQTASDILLHSRTLE 1371
GLFP NPK+V + GREV +P+IDEN TPVACK ++++P +A+I+N AD E GVIR TS+WC+ + K +G R+ DYR LN + K G+ T + G++ + P H S + R T + +E + +G + LRP ++ G V + DILLHS TLE
Sbjct: 92 GLFPANPKVVAALPGREVPIPLIDENVTPVACKQQQYNPVQAEIVNDQADLWLETGVIRYSTSAWCSRTSIVKKKDGSNRVTIDYRPLNAVTKKDSGGIGTLATMHHRIKGSNFFTLLDLPSAYHQLSIKEADRHKTAFRDARGRLYEFTRCGFGLTTIPAVFSAHLGDTLRPTENKGGV------ERWLDDILLHSATLE 286
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A6H5KGS7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS7_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.210e-19 Identity = 56/121 (46.28%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 763 LGPESRTNFVKVLDLLHKHNQGGLFPENPKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLNNLLK--VRGL 1119
LGPESR V++L FP+N KIV ++ GREV LP+ DEN P ACKA+R SP ++I+ DE+ EAG++ TS WCA +V K +G +R+C DYR LN L+ V GL
Sbjct: 779 LGPESRRRAVELL-----RECKDFFPQNTKIVNVIAGREVELPLYDENVKPFACKAQRFSPHMSNILMEQIDEMLEAGILSFATSEWCARIVPVLKKDGTYRICIDYRELNKRLRKNVNGL 894
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A6H5K948_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K948_9PHAE) HSP 1 Score: 101 bits (251), Expect = 5.060e-19 Identity = 65/201 (32.34%), Postives = 98/201 (48.76%), Query Frame = 1
Query: 829 GLFPENPKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLNNLLKVR----GLETSLPIMIGCTGASSSPS*PYLRHTASCRSKRRTATK------QHFEMRQADYGKHVLQ----------LRPPDDPGSVFSAAWRHQTASDILLHSRTLE 1371
GL P N + + GREV +P+IDE+ TP+ACK +RH+P ADIIN D+ +E G+I S WC+ +V+ K NGK RL D+R LN L K G S+P +G + + P + H + R T + ++ + +G + L+P ++ G V + DIL+H+ TLE
Sbjct: 41 GLCPANDMTLSQLHGREVEIPLIDEDVTPIACKQQRHNPIHADIINRQVDQWKELGIIDYSDSQWCSRIVMQQKKNGKPRLTIDHRALNELTKKSSGGIGTLASMPDRVGKSKWFTLLDLPQVYHQIPIKPSDRHKTAFRDARGRLYQFNRCGFGLTTIPAVFSALLGDTLQPVENKGCV------ERWLDDILIHTETLE 235
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 7.470e-18 Identity = 69/223 (30.94%), Postives = 101/223 (45.29%), Query Frame = 1
Query: 763 LGPESRTNFVKVLDLLHKHNQGGLFPENPKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLNNL-LKVRGLETSLPIMIGCTGAS---SSPS*PYLRHTASCRSKRRTATK------QHFEMRQADYGKHVLQ----------LRPPDDPGSVFSAAWRHQTASDILLHSRTLE 1371
L P +RT +K++ GLFP + + GREVS+P+ D NATP+ACK +R P DI+N D+L E G++ S WC+ + L PK +G R+ DYR LNNL +K G +L M S + P H + R T + ++ + +G + LRP + G + + DIL+HS TLE
Sbjct: 767 LSPRARTTLLKII---RAQADKGLFPVKGAPLKQIHGREVSIPLKDPNATPIACKQQRLPPQSQDILNSTVDKLHEQGIVEYADSQWCSRVSLQPKKDGGTRMTLDYRPLNNLTVKNSGGIGNLASMHDRVRKSKWFTLLDLPQAYHQIPIKPSDRPKTAFRDARGRLYQFTRCSFGLTTIPAVFSALLGDTLRPTESKGGI------ERWLDDILIHSETLE 980
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A6H5JAJ3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ3_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 4.420e-17 Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 763 LGPESRTNFVKVLDLLHKHNQGGLFPENPKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLNNLLK 1107
LGP+SR+ + ++ H+ LFP NPKI+ + GREV +P++DEN TPVACK ++++P +A+I N D + GV+RR +S WC+ + K G R+ DYR LN + K
Sbjct: 881 LGPQSRSRLLGIIGKAHELE---LFPANPKIMDALPGREVPIPLVDENVTPVACK-QQYNPIQAEIANKQVDLWLKTGVVRRASSVWCSRTSIVKKKAGSNRVAVDYRPLNAVTK 991
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.480e-16 Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 844 NPKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLNNLLK--VRGL 1119
N K++ ++EGREV+LP+ DEN P +CKA+R SP +DI+ +++ EAG++ TS WCA +V K +G +RLC DYR LN LL+ V GL
Sbjct: 699 NTKLIKVIEGREVTLPLYDENVKPFSCKAQRFSPQMSDILMKQINDILEAGILSFATSEWCARIVPVLKKDGTYRLCIDYRELNKLLQKNVNGL 792
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A6L2KSZ1_TANCI (Reverse transcriptase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2KSZ1_TANCI) HSP 1 Score: 68.2 bits (165), Expect = 7.910e-10 Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 847 PKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLNNLLKVRGLETSLPIMI 1143
PK +P + +P++D N P+ + RH ++ D I I EL ++GVIR S + +P+V+ K +G WR+C DYR LNN + ++ LPI +
Sbjct: 57 PKSLPPHRIHDHKIPLLD-NTAPINIRPYRHPLSQKDAIEKIVKELLDSGVIRASHSPFSSPIVMVKKKDGSWRMCVDYRALNN----KTMKDKLPIPV 150
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Match: A0A2K3MQI8_TRIPR (Ty3/gypsy retrotransposon protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MQI8_TRIPR) HSP 1 Score: 70.5 bits (171), Expect = 4.110e-9 Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 796 VLDLLHKHNQ-----GGLFPENPKIVPMVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFTSSWCAPLVLAPKSNGKWRLCQDYRGLN 1095
+L + H+ Q +F E + P E + +P + E+A PV+ + R+S + DII+G+ DEL E G I+ S + +P+VL K GKWRLC D+R LN
Sbjct: 533 ILQVPHQITQLIDIYADIFEEPRTLPPHREAFDHKIP-LKESANPVSLRPYRYSSVQKDIIDGLVDELLEKGWIQHSNSPFASPVVLVRKKGGKWRLCVDFRRLN 636 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1092.761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1092.761.1 >prot_P-lacustris_contig1092.761.1 ID=prot_P-lacustris_contig1092.761.1|Name=mRNA_P-lacustris_contig1092.761.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=105bp MVEGREVSLPVIDENATPVACKARRHSPAEADIINGIADELQEAGVIRRFback to top mRNA from alignment at P-lacustris_contig1092:22385..23755+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1092.761.1 ID=mRNA_P-lacustris_contig1092.761.1|Name=mRNA_P-lacustris_contig1092.761.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1371bp|location=Sequence derived from alignment at P-lacustris_contig1092:22385..23755+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1092:22385..23755+ >mRNA_P-lacustris_contig1092.761.1 ID=mRNA_P-lacustris_contig1092.761.1|Name=mRNA_P-lacustris_contig1092.761.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=630bp|location=Sequence derived from alignment at P-lacustris_contig1092:22385..23755+ (Pleurocladia lacustris SAG_25_93)back to top |