mRNA_P-lacustris_contig1087.720.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig1087.720.1 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE) HSP 1 Score: 437 bits (1124), Expect = 3.030e-141 Identity = 273/461 (59.22%), Postives = 332/461 (72.02%), Query Frame = 1
Query: 304 RSGCPSSS--LRMACLVFAGGLGVAGAFLTPA-RLTVEGERLLGATVLGAAGTDVSSRQRFETNPADVASRIGILRDQIRDAIWEATDSIANAVEAMPNVGVHTNKTLSRLGVMVEKIDDEYFSKYLSFGSTPAFQETLAAVPSATLEREAGTGVGVAKPFTGGKKPIEKGKDKLSSSA---SVTASSKISRAAGXXXXXXXXXXXXAVVAESFAFKQEEME-ASRSKAGTVKLDRPKQVQDVFDEVQKKAVKYYKSNIAAPFSSKDGVAKGEGETPLPEVMQALEAKLESLLEESKFNPRKLKKDQKSQLVEAIRAMEASYPADANPLQSPELSGQWSVVYSSSSRLLGRALRGVLTAFFKTSDPRQVVDTGASSVLNACRARLRLTPLAIRVAKKGTYRATAGRKVLVEMPPTKKGWLRRMLPSLRAGKVEAEVTYLSNNWRVCRACGATVAFRKSGGD 1665
RS C SS + M L+ AG LG GAF+ P + T E G +GAAGT+ +S + T D +S+ +LRDQ+RDAIW+ATDSI +AVE MP+V +TN++L +LG +VE ID+ YFSKY++ G+TPA+++TLAA + T GTGV ++K G KP DK++ A + TASS S+A XXXXXXXXXXXX + A +GTVKLDRPK+VQ VFD+VQKKAV +YK++ A S+D A+G P+ E + LE KLESLL ES F PRKLKKD+KSQLV+AI+AME SYPA ANPL P LSGQWSVVYSSSSRLLGR ++G+ + FFKTSD RQVVDTGASSVLNACRARLRLTPLA+RVAKKG+YR TA RKVLVEMPPTKKG LRR+LPSLRAGKVEAEVTYLS+ WR+CRA G T+AFRKSGG+
Sbjct: 6 RSVCTSSRRLVGMHILIVAGLLGQTGAFMAPTGKPTAERGLERGVKAIGAAGTEAASSKSTSTGSTDASSKTLLLRDQLRDAIWKATDSITHAVEGMPDVMANTNESLLKLGTLVENIDERYFSKYVAVGATPAYKDTLAAAAT-TTSGATGTGVSMSK----GGKP-----DKMTEEAEGLASTASSDASKAXXXXXXXXXXXXXXXXXXXXXXXXDAKAAVAEEGSSGTVKLDRPKEVQGVFDDVQKKAVDFYKTSSGAMSKSQD--AEGGAVAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSRLLGRVIKGLFSGFFKTSDRRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYRKTAERKVLVEMPPTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRICRAGGVTLAFRKSGGE 454
BLAST of mRNA_P-lacustris_contig1087.720.1 vs. uniprot
Match: D8LNG8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG8_ECTSI) HSP 1 Score: 244 bits (623), Expect = 9.960e-70 Identity = 163/316 (51.58%), Postives = 208/316 (65.82%), Query Frame = 1
Query: 394 RLTVEGERLLGATVLGAAGTDVSSRQRFETNPADVASRIGILRDQIRDAIWEATDSIANAVEAMPNVGVHTNKTLSRLGVMVEKIDDEYFSKYLSFGSTPAFQETLAAVPSATLEREAGTGVGVAKPFTGGKKPIEKGKDKLSSSASVTASSKISRAAGXXXXXXXXXXXXAVVAESFAFKQEEMEASRSK--AGTVKLDRPKQVQDVFDEVQKKAVKYYKSNIAAPFSSKDGVAKGEGETPLPEVMQALEAKLESLLEESKFNPRKLKKDQKSQLVEAIRAMEASYPADANPLQSPELSGQWSVVYSSSSRLLGR 1335
R T EG G +GAAGT+ SS + + P DV+S+ +LRDQ+RDAIW+ATDSI +AVE MP+V +TN++L +LG +VEKID+ YFSKY++ G+ P++++TLAA VA G + K + L+S T SS +S+A XXXXXXXXXXXX + + +GTVKLDRPK+VQ VFD++QKKAV++YK++ A S+D A+G P+ E + LE KLESLL ES F PRKLKKD+KSQLV AI+AME SYPADANPL P LSGQWSVVYSSSSR LGR
Sbjct: 6 RPTAEGGLERGVKAIGAAGTEASSSKSISSTPTDVSSKTLLLRDQLRDAIWKATDSITHAVEGMPDVTANTNESLLKLGTLVEKIDERYFSKYVTAGANPSYKDTLAAAAXXXXXXXXXXXXXVAASKGGKLDKMTKEAEGLAS----TVSSDVSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEEGSSGTVKLDRPKEVQGVFDDIQKKAVEFYKTSSGAMSKSQD--AEGGAAAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVAAIKAMEESYPADANPLADPALSGQWSVVYSSSSRGLGR 315
BLAST of mRNA_P-lacustris_contig1087.720.1 vs. uniprot
Match: A0A836CKA5_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKA5_9STRA) HSP 1 Score: 141 bits (355), Expect = 6.840e-32 Identity = 137/469 (29.21%), Postives = 205/469 (43.71%), Query Frame = 1
Query: 439 GAAGTDVSSRQRFETNPADVASRIGILRDQIRDAIWEATDSIANAVEAMPNVGVHTNKTLSRLGVMVEKIDDEYFSKYLSFGSTPAFQETLAAVPS--------------------ATLEREAGTGVGVAK-----PFTGGKKPIEKGKDKLSSSASVTASSKISRAAGXXXXXXXXXXXXAVVAESFAFKQEEMEASRSKAGTVKLDRPKQVQDVFDEVQKKAVKYYKSNIAAPFSS---------------KDGVAKGEGETPLPEVMQA-LEAKLESLLEESKFNPRKLKKDQKSQL------------------VEAIRAMEASYPADANPLQSPELSGQWSVVYSSSSRLLGRALRGVLTAFFKTSDPRQVVDTGASSVLNACRARLRLTPLAIRVAKKGTYR-----ATAGRKVLVEMPPTKKGWLRRMLPSLRAGKVEAEVTYLSNNWRVCRACGATVAFRK 1653
G T +S Q ++ V +G +++RDAI +A+D++ +AVE + L LG M+ +++D+YF+ + T ++ TL P+ A + E TG A+ P P+++ + S A S+ ++ A A A++ KQ+ SKAG + L RP QVQ+V + +QK+AV YK A + VA E P +A LE +LE LL+ S +P ++ + ++ L V + A+EAS P A+PL SP L+G W++VYSSS + AL +AFFK S P Q VD A +VLN+ RLRLTPL +R + GT+ G +V +G R R G VTYLS WR+CR+ G +AFRK
Sbjct: 35 GYVNTMAASTQPDNSDAHTVVEEVG---EKLRDAIMDASDTVWSAVETKLAEAADIHP-LEDLGKMLMELEDKYFATSSAASPTSSYLSTLGGSPTPPPLNITAEPEEVITMEASVAEIAAELDTGAEAAEAIGGTPVPAVAAPVQEASATVGSEAKAVPSAAVATPA-------------APPAKATPAKQQ------SKAG-LDLQRPAQVQNVIESLQKRAVAMYKGAAQAASAGFVRDEDVPAVAVAAXXXXVADAMPEIAPPRASEAMLEKRLEDLLKTSDMSPARMSEQDQAALTTLHKSTRLTTHLHATHQVTTLEALEASTPPGAHPLHSPLLTGDWALVYSSSGSVFKAALGKKRSAFFKVSSPTQSVDAAAGTVLNSALLRLRLTPLRLRARQAGTFTLDKGSGAPGATAIVNFA---RGGFGRFAKLFRRGTAAVTVTYLSTGWRICRSDGVVLAFRK 476
BLAST of mRNA_P-lacustris_contig1087.720.1 vs. uniprot
Match: D8LNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG7_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 1.340e-17 Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1
Query: 1516 MPPTKKGWLRRMLPSLRAGKVEAEVTYLSNNWRVCRACGATVAFRKSGG 1662
MPPTKKG LRR+LPSLRAGKVEAEVTYLS+ WRVCRA G TVAFRK+GG
Sbjct: 1 MPPTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRVCRAGGVTVAFRKNGG 49 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1087.720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig1087.720.1 >prot_P-lacustris_contig1087.720.1 ID=prot_P-lacustris_contig1087.720.1|Name=mRNA_P-lacustris_contig1087.720.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=458bp MMFRSGCPSSSLRMACLVFAGGLGVAGAFLTPARLTVEGERLLGATVLGAback to top mRNA from alignment at P-lacustris_contig1087:6659..27125+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig1087.720.1 ID=mRNA_P-lacustris_contig1087.720.1|Name=mRNA_P-lacustris_contig1087.720.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=20467bp|location=Sequence derived from alignment at P-lacustris_contig1087:6659..27125+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig1087:6659..27125+ >mRNA_P-lacustris_contig1087.720.1 ID=mRNA_P-lacustris_contig1087.720.1|Name=mRNA_P-lacustris_contig1087.720.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2748bp|location=Sequence derived from alignment at P-lacustris_contig1087:6659..27125+ (Pleurocladia lacustris SAG_25_93)back to top |