mRNA_P-lacustris_contig1082.696.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1082.696.1
Unique NamemRNA_P-lacustris_contig1082.696.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1082.696.1 vs. uniprot
Match: D8LD02_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD02_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 7.750e-12
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 MKGTSESGRMGEGSYLSEEQREHFREKGYLVLPDWWSKQ 117
            M+GT E+   GEG +LSEEQREHF EKGYLVLPDWWSKQ
Sbjct:    1 MEGTGENKGAGEGKFLSEEQREHFNEKGYLVLPDWWSKQ 39
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1082.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD02_ECTSI7.750e-1276.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1082contigP-lacustris_contig1082:18955..19982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog2880.D8LD02
Preferred namePHYHD1
KEGG koko:K00477,ko:K18741
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001561,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006629,GO:0006631,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016491,GO:0016705,GO:0016706,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0048244,GO:0051213,GO:0055114,GO:0071704,GO:0072329,GO:1901575
EggNOG free text desc.phytanoyl-CoA dioxygenase activity
EggNOG OGsCOG5285@1,KOG3290@2759
EC1.14.11.18
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Exons2
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.428269-CDS-P-lacustris_contig1082:18954..190111622815358.428269-CDS-P-lacustris_contig1082:18954..19011Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 18955..19011 +
1693493498.0773783-CDS-P-lacustris_contig1082:18954..190111693493498.0773783-CDS-P-lacustris_contig1082:18954..19011Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 18955..19011 +
1622815358.4411218-CDS-P-lacustris_contig1082:19907..199821622815358.4411218-CDS-P-lacustris_contig1082:19907..19982Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 19908..19982 +
1693493498.0874386-CDS-P-lacustris_contig1082:19907..199821693493498.0874386-CDS-P-lacustris_contig1082:19907..19982Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1082 19908..19982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1082.696.1prot_P-lacustris_contig1082.696.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1082 18955..19982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1082.696.1

>prot_P-lacustris_contig1082.696.1 ID=prot_P-lacustris_contig1082.696.1|Name=mRNA_P-lacustris_contig1082.696.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=44bp
MKGTSESGRMGEGSYLSEEQREHFREKGYLVLPDWWSKQASML*
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mRNA from alignment at P-lacustris_contig1082:18955..19982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1082.696.1 ID=mRNA_P-lacustris_contig1082.696.1|Name=mRNA_P-lacustris_contig1082.696.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1028bp|location=Sequence derived from alignment at P-lacustris_contig1082:18955..19982+ (Pleurocladia lacustris SAG_25_93)
ATGAAAGGCACGAGCGAGAGTGGAAGGATGGGCGAAGGAAGCTATCTTTC
AGAGGAGGTGAGGATGAGGATCCCCTGGACTCAGACTTTAAATTCTTCGG
AGGTCAACTTCAACTTTGTACATGGAGGTGTTTGTGCTGTACTAGTGTTC
GGTTCTGCGTTCTGCCCATGGGGTCAAAATGACGCGATGCCTGCTGCAGC
CCTTACGAGGGTTGCAAGTGCTGGTAGCGGCGTCAGGTCTGCTTGAAGTC
GTTGTGGGAAACAAATCTGTCATTTTCAAACACCCACACCCAGCCTATCT
GTGGGTAGAGCACTTCAAAAGTCGGGGCTCCGTTTTGCTGTCATGTTTAG
TTGTAGAAACAGTAGGTTTTCTATCATTCGGAGTTGGAGAGAGGGAGTGA
GGTAGACTGTATGATGCTCTGGTGGAGACAAGGCCCAACCCCTGCGCTGT
GCAACAACCAACGGGATTTTTCGTGCCCAACGTTTTTAGCTGATCTGGTG
TATCTCGTGTGTGACTGGTGGTGATCTCTCGTTCGGCAGTTTTCAAATCC
AATCAAAATCAAAATCGGTTGACAACTTTAGGCTTCCTCCGTAGGCCACC
TGTTTGAAGGGTCCACAGGTGTAGGAAACTCAAACCCGCTTCAATACCGA
GGGCTGGCAGTTATCTCCGTTGATTTTGTTGGGCAAGGAGAGAAGGTGGA
GAAAGATAGTGAGCAGGGAAGTGCTACACGTGGTCCGCCTGCTTATCATA
CCAGCAAATGGTACATGGAAAATCCGTGTACCGTCAGTGGTCTCCCGATT
TCCACCGGTTTTTCGGAACGGTTCTGAGGAACGGTTCTTCCTGTATGCGA
GAATGTGTATGCATGGATCCTACGCTATCTTCCAGGATGTACGTCACCCA
CAAACTTGCTTCGTTGCCCTGTGTACCGTCTCTTGTGCGTGCGTTTCGCT
CAGCAACGGGAGCACTTCCGCGAGAAAGGCTACCTGGTCCTGCCCGATTG
GTGGTCAAAACAGGCGAGTATGCTATAG
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Coding sequence (CDS) from alignment at P-lacustris_contig1082:18955..19982+

>mRNA_P-lacustris_contig1082.696.1 ID=mRNA_P-lacustris_contig1082.696.1|Name=mRNA_P-lacustris_contig1082.696.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=264bp|location=Sequence derived from alignment at P-lacustris_contig1082:18955..19982+ (Pleurocladia lacustris SAG_25_93)
ATGAAAGGCACGAGCGAGAGTGGAAGGATGGGCGAAGGAAGCTATCTTTC
AGAGGAGATGAAAGGCACGAGCGAGAGTGGAAGGATGGGCGAAGGAAGCT
ATCTTTCAGAGGAGCAACGGGAGCACTTCCGCGAGAAAGGCTACCTGGTC
CTGCCCGATTGGTGGTCAAAACAGGCGAGTATGCTATAGCAACGGGAGCA
CTTCCGCGAGAAAGGCTACCTGGTCCTGCCCGATTGGTGGTCAAAACAGG
CGAGTATGCTATAG
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