mRNA_P-lacustris_contig1061.566.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig1061.566.1
Unique NamemRNA_P-lacustris_contig1061.566.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig1061.566.1 vs. uniprot
Match: D7FHF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF3_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.190e-27
Identity = 72/95 (75.79%), Postives = 72/95 (75.79%), Query Frame = 2 
Query:  590 PLGTGAWPPELLEAAQAAGLTLPPGAGRVGGSGGGT------HSPPGHPGGHRIGGGARAGGTILRMTIPGMVDEDSPAGPGVRIQLMSTRREMP 856
            PLG GAWPPELLEAAQAAGLTLPPGAGRV G           H   G     RI  GARAGGTILRMTIPGMVDEDSPAGPGVRIQLMSTRREMP
Sbjct:  113 PLGVGAWPPELLEAAQAAGLTLPPGAGRVSGXXXXXXXXXXXHPHGGXXXXXRIXXGARAGGTILRMTIPGMVDEDSPAGPGVRIQLMSTRREMP 207
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BLAST of mRNA_P-lacustris_contig1061.566.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.260e-27
Identity = 149/296 (50.34%), Postives = 153/296 (51.69%), Query Frame = 2 
Query:  101 GGRGGGGGA-VVDTLSERFAQLAALEGRAEMQRAAAISRRSAGSTGASPPASSSFSGASA----------------------VRQA---AMVAMERAXXXXXXXXXXXXXRL----TASRASGSKPSAXXXXXXGSSTGLKTPHRGRSG-GPISGGLDAAAALERELSLLRHARAAQAAHAXXXXXXXXXXXXXP-----LGTGAWPPELLEAAQAAGLTLPPGAGRVGGSGGGT--------HSPPGHPGGHRIGGGARAGGTILRMTIPGMVDEDSPAGPGVRIQLMSTRREMP 856
            GG G G G   VDTLSERFAQLAALEGRAE+QRAA                                               VRQA   + VAMERA              +    TAS         XXXXXX             SG GP S  LDAAAALERELSLLRHARAAQ    XXXXXXXXXXXXX      LG GAWPPELLEAAQAAGLTLPPGAGR G              H   G PGGHRIGGG+RAG            DEDSPAGPGVRIQLMSTRREMP
Sbjct:  108 GGEGAGAGTGAVDTLSERFAQLAALEGRAEVQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRQAQAASRVAMERARAAAASNSWTSRPSVAGANTASGXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSGPSSRNLDAAAALERELSLLRHARAAQXXXXXXXXXXXXXXXXXXXXXXLLGVGAWPPELLEAAQAAGLTLPPGAGRAGDXXXXXXXXXXXXXHPHGGPPGGHRIGGGSRAG------------DEDSPAGPGVRIQLMSTRREMP 391
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1061.566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHF3_ECTSI1.190e-2775.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2P5_9PHAE4.260e-2750.34HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1061contigP-lacustris_contig1061:62183..64416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1524
Cds size1077
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1061.566.1prot_P-lacustris_contig1061.566.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig1061 62370..64156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.3185222-UTR-P-lacustris_contig1061:62182..623691622815332.3185222-UTR-P-lacustris_contig1061:62182..62369Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 62183..62369 +
1693493481.9869719-UTR-P-lacustris_contig1061:62182..623691693493481.9869719-UTR-P-lacustris_contig1061:62182..62369Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 62183..62369 +
1622815332.354483-UTR-P-lacustris_contig1061:64156..644161622815332.354483-UTR-P-lacustris_contig1061:64156..64416Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 64157..64416 +
1693493482.012083-UTR-P-lacustris_contig1061:64156..644161693493482.012083-UTR-P-lacustris_contig1061:64156..64416Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig1061 64157..64416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815332.330466-CDS-P-lacustris_contig1061:62369..629541622815332.330466-CDS-P-lacustris_contig1061:62369..62954Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 62370..62954 +
1693493481.9957654-CDS-P-lacustris_contig1061:62369..629541693493481.9957654-CDS-P-lacustris_contig1061:62369..62954Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 62370..62954 +
1622815332.3422494-CDS-P-lacustris_contig1061:63664..641561622815332.3422494-CDS-P-lacustris_contig1061:63664..64156Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 63665..64156 +
1693493482.004-CDS-P-lacustris_contig1061:63664..641561693493482.004-CDS-P-lacustris_contig1061:63664..64156Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig1061 63665..64156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig1061.566.1

>prot_P-lacustris_contig1061.566.1 ID=prot_P-lacustris_contig1061.566.1|Name=mRNA_P-lacustris_contig1061.566.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=359bp
MQRAAAISRRSAGSTGASPPASSSFSGASAVRQAAMVAMERARAAAAAAS
SSASSRLTASRASGSKPSASASASAGSSTGLKTPHRGRSGGPISGGLDAA
AALERELSLLRHARAAQAAHAAAGGFAGGGGGGGPLGTGAWPPELLEAAQ
AAGLTLPPGAGRVGGSGGGTHSPPGHPGGHRIGGGARAGGTILRMTIPGM
VDEDSPAGPGVRIQLMSTRREMPPPPAAAGRHPPGAMQQQQSRSQGSLGQ
GQGEPQRRPLPTRSTGGPGSSALGRPNSGGGGGGRPPNRGAASAAATATP
SAPTGASAKVRAKPGASAGRADGTRTGVKQGSTRGGRASRSSSSSGAGSV
SAGGTLAP*
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mRNA from alignment at P-lacustris_contig1061:62183..64416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig1061.566.1 ID=mRNA_P-lacustris_contig1061.566.1|Name=mRNA_P-lacustris_contig1061.566.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2234bp|location=Sequence derived from alignment at P-lacustris_contig1061:62183..64416+ (Pleurocladia lacustris SAG_25_93)
GGATCCCCTCCGTGGGGATAGGGCTGGTGGAGCAGCGCCGTACACTCATC
CTCATGCTTCGTTTTCGGCGGCGGCCCCTGGTTTCGGCGATCAAATCATC
GGAGGGCGAGGAGGAGGAGGCGGAGCGGTGGTTGATACGCTTAGCGAGCG
GTTTGCGCAGCTCGCGGCGCTGGAAGGGCGCGCGGAGATGCAGAGGGCGG
CGGCCATATCGCGCCGGTCCGCGGGATCAACGGGGGCAAGCCCGCCGGCG
TCGTCTTCCTTCTCCGGTGCCTCGGCCGTCCGCCAGGCGGCAATGGTGGC
CATGGAGCGAGCCCGCGCTGCCGCTGCGGCGGCGTCCTCGTCTGCATCTT
CTCGCCTGACCGCTTCTCGCGCATCAGGCTCGAAGCCGTCTGCTTCTGCT
TCTGCTTCGGCCGGCAGCAGTACCGGCCTCAAGACTCCTCATCGTGGCAG
AAGCGGAGGGCCGATCTCCGGGGGCCTCGATGCCGCCGCGGCGCTCGAGC
GCGAGCTGTCTCTCCTGCGGCATGCGCGAGCGGCCCAAGCCGCTCACGCG
GCTGCAGGAGGTTTTGCAGGAGGTGGGGGTGGTGGCGGACCCCTTGGAAC
GGGCGCATGGCCGCCGGAACTTCTTGAAGCCGCGCAGGCGGCGGGGCTGA
CCTTGCCCCCCGGAGCGGGTAGGGTTGGCGGCAGCGGCGGCGGGACTCAC
TCGCCACCGGGCCACCCGGGAGGGCATAGGATAGGGGGAGGGGCGAGGGC
TGGAGGTACCATTCTTAGGATGGTGAGCGAGCGTGGGTTGGACGGTTACG
TTTTGCGTTGTGCAGTTGGATTTTCGGGTTAGGGTTAGGCTTTACGGCCG
ACCAGGTGGAGCCTCTGATGTCGAGAGGATGGCACGTGTGATGCGTTCAC
GTTCTACTTTCGAGTTTGTTTATTCTGGTTCGACGATACTGCTCCAGGGT
TGGCAGCTTCGACCTTCGAATGCTTTGCTGTCTTTCCGCTTGAGACCTAT
CCCTTACTCGGAGTATACCTTTTCAGGTAGTAAACCCATGACCACGGAAG
GCGCCCGCGTAAGTCGGACCAGTACGCACCGTAGAAGTAACTGGGAAGAG
AACGGAACGTTTTTGTTGTATGAAGACAACAACAACAACAACAACAACAA
CAACAACAACAACACGTTTTTTTTTTTGTATGAAGACAACAACAACAACA
GCAACAACAACAGCGACCGCAACAGGCAGCAACAACCTACTCTTTTTATT
TTCGAAGGGGCGCGACGACGCAACAGCGGCGAAAATAAAGAACAGCCATA
AAGCTTTTCCTCGTAGCTCTTGGGGAAAGAGCGCGCTGCAGTACTCATCT
CTCCTTGCCCCACGGAAGCTCGTTATCTTTACACAGCCCAAGTGCCTCGT
TCTCATCTCTACCCTCATCCCCGACTCCTTCTCCGTTTGCCATCGATTGG
CCGCACCGGGCACGATTTTATTTACACCCCAGACCATTCCAGGGATGGTG
GATGAGGACTCGCCCGCCGGGCCGGGGGTCCGAATCCAGCTCATGTCGAC
GCGGAGGGAGATGCCGCCGCCGCCCGCCGCGGCGGGTCGGCACCCCCCAG
GTGCGATGCAGCAGCAGCAGTCTCGATCGCAGGGGTCGCTGGGCCAGGGG
CAGGGGGAGCCTCAACGCCGGCCATTGCCCACGCGGTCGACAGGAGGTCC
GGGTTCTTCGGCGCTCGGTCGCCCGAACAGTGGTGGTGGCGGGGGGGGCA
GGCCCCCCAACCGTGGCGCAGCTTCCGCAGCGGCCACCGCCACTCCTTCG
GCGCCAACCGGCGCTTCCGCGAAGGTGAGGGCGAAACCTGGTGCAAGCGC
GGGCCGTGCTGATGGCACGAGAACCGGGGTCAAGCAGGGAAGCACTCGCG
GTGGTCGCGCCAGCAGGAGTTCCAGTTCCTCCGGCGCTGGGTCGGTGTCG
GCGGGAGGGACTCTCGCCCCATGACCCGGGGGCGGCGGAAGGGAGCCGGA
GCCTGGGGCGGGGAGAAAACAGCGGGCACCTCTTCCGCCACCGCCGCAGC
CGCCGCTACTGCCGAGAAGGCCCAGCGTTCAGGCCGCTTGCCGTCGAAGA
GGAAGAGAGAGGTTTCTGGCTCAAGGAGCGGCTCCAACGCTGGCGCAGAC
GAAGCTGCGACGTCGGCCTCGTTGATGGTCCCCGGGACGACGTTGCGTTT
AAGAAGGACTCGATCCTTGTCCTCCTCTTCCTCA
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Coding sequence (CDS) from alignment at P-lacustris_contig1061:62183..64416+

>mRNA_P-lacustris_contig1061.566.1 ID=mRNA_P-lacustris_contig1061.566.1|Name=mRNA_P-lacustris_contig1061.566.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2154bp|location=Sequence derived from alignment at P-lacustris_contig1061:62183..64416+ (Pleurocladia lacustris SAG_25_93)
ATGCAGAGGGCGGCGGCCATATCGCGCCGGTCCGCGGGATCAACGGGGGC
AAGCCCGCCGGCGTCGTCTTCCTTCTCCGGTGCCTCGGCCGTCCGCCAGG
CGGCAATGGTGGCCATGGAGCGAGCCCGCGCTGCCGCTGCGGCGGCGTCC
TCGTCTGCATCTTCTCGCCTGACCGCTTCTCGCGCATCAGGCTCGAAGCC
GTCTGCTTCTGCTTCTGCTTCGGCCGGCAGCAGTACCGGCCTCAAGACTC
CTCATCGTGGCAGAAGCGGAGGGCCGATCTCCGGGGGCCTCGATGCCGCC
GCGGCGCTCGAGCGCGAGCTGTCTCTCCTGCGGCATGCGCGAGCGGCCCA
AGCCGCTCACGCGGCTGCAGGAGGTTTTGCAGGAGGTGGGGGTGGTGGCG
GACCCCTTGGAACGGGCGCATGGCCGCCGGAACTTCTTGAAGCCGCGCAG
GCGGCGGGGCTGACCTTGCCCCCCGGAGCGGGTAGGGTTGGCGGCAGCGG
CGGCGGGACTCACTCGCCACCGGGCCACCCGGGAGGGCATAGGATAGGGG
GAGGGGCGAGGGCTGGAGGTACCATTCTTAGGATGATGCAGAGGGCGGCG
GCCATATCGCGCCGGTCCGCGGGATCAACGGGGGCAAGCCCGCCGGCGTC
GTCTTCCTTCTCCGGTGCCTCGGCCGTCCGCCAGGCGGCAATGGTGGCCA
TGGAGCGAGCCCGCGCTGCCGCTGCGGCGGCGTCCTCGTCTGCATCTTCT
CGCCTGACCGCTTCTCGCGCATCAGGCTCGAAGCCGTCTGCTTCTGCTTC
TGCTTCGGCCGGCAGCAGTACCGGCCTCAAGACTCCTCATCGTGGCAGAA
GCGGAGGGCCGATCTCCGGGGGCCTCGATGCCGCCGCGGCGCTCGAGCGC
GAGCTGTCTCTCCTGCGGCATGCGCGAGCGGCCCAAGCCGCTCACGCGGC
TGCAGGAGGTTTTGCAGGAGGTGGGGGTGGTGGCGGACCCCTTGGAACGG
GCGCATGGCCGCCGGAACTTCTTGAAGCCGCGCAGGCGGCGGGGCTGACC
TTGCCCCCCGGAGCGGGTAGGGTTGGCGGCAGCGGCGGCGGGACTCACTC
GCCACCGGGCCACCCGGGAGGGCATAGGATAGGGGGAGGGGCGAGGGCTG
GAGGTACCATTCTTAGGATGACCATTCCAGGGATGGTGGATGAGGACTCG
CCCGCCGGGCCGGGGGTCCGAATCCAGCTCATGTCGACGCGGAGGGAGAT
GCCGCCGCCGCCCGCCGCGGCGGGTCGGCACCCCCCAGGTGCGATGCAGC
AGCAGCAGTCTCGATCGCAGGGGTCGCTGGGCCAGGGGCAGGGGGAGCCT
CAACGCCGGCCATTGCCCACGCGGTCGACAGGAGGTCCGGGTTCTTCGGC
GCTCGGTCGCCCGAACAGTGGTGGTGGCGGGGGGGGCAGGCCCCCCAACC
GTGGCGCAGCTTCCGCAGCGGCCACCGCCACTCCTTCGGCGCCAACCGGC
GCTTCCGCGAAGGTGAGGGCGAAACCTGGTGCAAGCGCGGGCCGTGCTGA
TGGCACGAGAACCGGGGTCAAGCAGGGAAGCACTCGCGGTGGTCGCGCCA
GCAGGAGTTCCAGTTCCTCCGGCGCTGGGTCGGTGTCGGCGGGAGGGACT
CTCGCCCCATGAACCATTCCAGGGATGGTGGATGAGGACTCGCCCGCCGG
GCCGGGGGTCCGAATCCAGCTCATGTCGACGCGGAGGGAGATGCCGCCGC
CGCCCGCCGCGGCGGGTCGGCACCCCCCAGGTGCGATGCAGCAGCAGCAG
TCTCGATCGCAGGGGTCGCTGGGCCAGGGGCAGGGGGAGCCTCAACGCCG
GCCATTGCCCACGCGGTCGACAGGAGGTCCGGGTTCTTCGGCGCTCGGTC
GCCCGAACAGTGGTGGTGGCGGGGGGGGCAGGCCCCCCAACCGTGGCGCA
GCTTCCGCAGCGGCCACCGCCACTCCTTCGGCGCCAACCGGCGCTTCCGC
GAAGGTGAGGGCGAAACCTGGTGCAAGCGCGGGCCGTGCTGATGGCACGA
GAACCGGGGTCAAGCAGGGAAGCACTCGCGGTGGTCGCGCCAGCAGGAGT
TCCAGTTCCTCCGGCGCTGGGTCGGTGTCGGCGGGAGGGACTCTCGCCCC
ATGA
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