|
|
Homology
BLAST of mRNA_P-lacustris_contig106.551.1 vs. uniprot
Match: D8LC29_ECTSI (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC29_ECTSI) HSP 1 Score: 352 bits (902), Expect = 1.500e-114 Identity = 180/224 (80.36%), Postives = 195/224 (87.05%), Query Frame = 2
Query: 323 ENGGG--LSSCSYQPECDFVVFPSNTSVCWSELSEEELARVRRIILIDSRWVNTGAVVRHPKLMGLRHVRIRDPPAVSRFWRWHGEGEGHICTAEATYLVLKDFEEATGLATEGGRLEDILFLFALVGSRIKAAYESDPSKLGMGFPSSEEAKLRHRVRRVRLDRLVKAKYRGLEAVRESNGDEAAIEEFFRRRRGESIYDAASMNVASWKEKPVEVCNEEEAV 988
E GG LSSCSY+PE DFVVFPS SVCWSELSEE+LARVRR+ILIDSRWVNTGAVV HPKL GLRHVRIR+PPAVS+FWRWH EGEGHICTAEATYLVLKDFEEATGL T GGRLEDILFLFAL+GSRIKAAYESDPSKLG PSSEEAK R RVR V+LDRLVKAKY+GL+A+RE +GDEAAIEEFFRRRRGES+YDAAS AS ++PV C E+ V
Sbjct: 98 EGSGGDDLSSCSYRPESDFVVFPSAASVCWSELSEEDLARVRRVILIDSRWVNTGAVVGHPKLKGLRHVRIREPPAVSQFWRWHTEGEGHICTAEATYLVLKDFEEATGLVTRGGRLEDILFLFALMGSRIKAAYESDPSKLGKSCPSSEEAKQRRRVRLVQLDRLVKAKYKGLDALRERDGDEAAIEEFFRRRRGESVYDAASTTSASLAQQPVGDCTEQGEV 321
BLAST of mRNA_P-lacustris_contig106.551.1 vs. uniprot
Match: A0A6H5KIR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIR2_9PHAE) HSP 1 Score: 146 bits (368), Expect = 5.210e-38 Identity = 69/94 (73.40%), Postives = 81/94 (86.17%), Query Frame = 3
Query: 42 RASSCMDEYLDKPPDIKLWPETRQECHSCGKRGRLYCSDCLVFVGTPSVVQTPT-VRLPVQVDIVVTAEERRRSSGVHVAVVAPQSVRVVPFEG 320
R +S M++YL++PPDI LWP+ RQECH CGKR RLYC DCL+ VG P V+TPT +RLP+QVD+VVTAEERRRSSGVHVAV+APQSVRVV FEG
Sbjct: 6 RGASAMEDYLERPPDINLWPKARQECHRCGKRVRLYCPDCLLLVGMPDGVETPTELRLPLQVDVVVTAEERRRSSGVHVAVMAPQSVRVVSFEG 99
BLAST of mRNA_P-lacustris_contig106.551.1 vs. uniprot
Match: A0A2P6MYR2_9EUKA (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MYR2_9EUKA) HSP 1 Score: 68.2 bits (165), Expect = 4.600e-9 Identity = 36/128 (28.12%), Postives = 71/128 (55.47%), Query Frame = 2
Query: 353 YQPECDFVV--FPSNTSVCWSELSEEELARVRRIILIDSRWVNTGAVVRHPKLMGLRHVRIRDPPAVSRFWRWHGEGEGHICTAEATYLVLKDFEEATGLATEGGRLEDILFLFALVGSRIKAAYESD 730
Y+ E D V+ FPS + +SE ++ + ++II+IDS W T ++R+ +L GL+ VRI+ ++FWR+ G + T EA Y +++++ G ++++L+ F+ + I+ Y+ +
Sbjct: 118 YRQEKDEVLLLFPSPDA---KNISEIDVTKYKKIIVIDSTWSQTKGILRNERLQGLQCVRIQTYE--TKFWRYQDHGREFLATIEAIYYFYREYQQRINGGVYRGEMDNLLYYFSFFYNLIQGVYKKN 240
BLAST of mRNA_P-lacustris_contig106.551.1 vs. uniprot
Match: Q54C26_DICDI (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54C26_DICDI) HSP 1 Score: 64.7 bits (156), Expect = 9.700e-8 Identity = 30/124 (24.19%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 353 YQPECDFVVFPSNTSVCWSELSEEELARVRRIILIDSRWVNTGAVVRHPKLMGLRHVRIRDPPAVSRFWRWHGEGEGHICTAEATYLVLKDFEEATGLATEGGRLEDILFLFALVGSRIKAAYE 724
Y + +++PS S C+ + + + + +++++ ++S+W N +++HPKL G++ V+I + FWR G+ ++ T EA Y K+F + G +++LF + + I+ Y+
Sbjct: 173 YNLDETILLYPSEDS-CF--VKDIDFSNIKKVLFVESQWHNARKILKHPKLQGIKCVKIDMQKTM--FWRHQRHGDSYLATIEAIYYFFKEFHLSQNNNQYNGEYDNLLFYYTFFYNLIQTTYK 291
BLAST of mRNA_P-lacustris_contig106.551.1 vs. uniprot
Match: J9IQ79_9SPIT (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IQ79_9SPIT) HSP 1 Score: 59.3 bits (142), Expect = 6.310e-6 Identity = 30/126 (23.81%), Postives = 63/126 (50.00%), Query Frame = 2
Query: 374 VVFPSNTSVCWSELSEEELARVRRIILIDSRWVNTGAVVRHPKLMGLRHVRIRDPPAVSRFWRWHGEGEGHICTAEATYLVLKDFEEATGLATE----GGRLEDILFLFALVGSRIKAAYESDPSK 739
++FP+ ++ + ++ EELA+++++++ID W T ++ L L+ V+I V FWR+ E ++ T EA Y +DF+ + G+ +++L+ + I+ Y+ K
Sbjct: 177 LLFPTEDAIEVTSMNAEELAKIKKVVIIDCTWHQTAHFLKQQNLKKLKTVKILTEKTV--FWRYQRISESNLATIEALYYFFRDFDVNKNCQGDYSKYDGKYDNLLYYYVFNYKLIQFEYKEGQKK 300
BLAST of mRNA_P-lacustris_contig106.551.1 vs. uniprot
Match: A0A078A0U2_STYLE (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A0U2_STYLE) HSP 1 Score: 59.3 bits (142), Expect = 6.580e-6 Identity = 31/126 (24.60%), Postives = 67/126 (53.17%), Query Frame = 2
Query: 374 VVFPSNTSVCWSELSEEELARVRRIILIDSRWVNTGAVVRHPKLMGLRHVRIRDPPAVSRFWRWHGEGEGHICTAEATYLVLKDFE---EATG-LATEGGRLEDILFLFALVGSRIKAAYESDPSK 739
++FP++ + ++SEEELA+++++++ID W T ++ + ++ ++I+ V FWR+ E ++ T EA Y +D++ +G A G+ +++L+ +A I+ Y K
Sbjct: 168 LLFPTDDAQEVIKMSEEELAKIKKVVIIDCTWNQTHHFLKQANVKKIKKIKIQTEKTV--FWRYQRISEANLATIEALYYFFRDYDVNKNCSGDYAKYDGKYDNLLYYYAFNYKLIQYEYVEGSKK 291
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 254.2 |
| Seed ortholog evalue | 4.6e-65 |
| Seed eggNOG ortholog | 2880.D8LC29 |
| Preferred name | DTWD1 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | DTW |
| EggNOG OGs | KOG3795@1,KOG3795@2759 |
| Ec32 ortholog description | DTW |
| Ec32 ortholog | Ec-20_004220.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 8 |
| Model size | 1591 |
| Cds size | 558 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815330.9905684-UTR-P-lacustris_contig106:221478..222006 | 1622815330.9905684-UTR-P-lacustris_contig106:221478..222006 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 221479..222006 - |
| 1693493481.0932803-UTR-P-lacustris_contig106:221478..222006 | 1693493481.0932803-UTR-P-lacustris_contig106:221478..222006 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 221479..222006 - |
| 1622815331.0662959-UTR-P-lacustris_contig106:224843..224883 | 1622815331.0662959-UTR-P-lacustris_contig106:224843..224883 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 224844..224883 - |
| 1693493481.1574163-UTR-P-lacustris_contig106:224843..224883 | 1693493481.1574163-UTR-P-lacustris_contig106:224843..224883 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 224844..224883 - |
| 1622815331.0790973-UTR-P-lacustris_contig106:225334..225506 | 1622815331.0790973-UTR-P-lacustris_contig106:225334..225506 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 225335..225506 - |
| 1693493481.1807623-UTR-P-lacustris_contig106:225334..225506 | 1693493481.1807623-UTR-P-lacustris_contig106:225334..225506 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 225335..225506 - |
| 1622815331.0891902-UTR-P-lacustris_contig106:226030..226102 | 1622815331.0891902-UTR-P-lacustris_contig106:226030..226102 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 226031..226102 - |
| 1693493481.1939957-UTR-P-lacustris_contig106:226030..226102 | 1693493481.1939957-UTR-P-lacustris_contig106:226030..226102 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 226031..226102 - |
| 1622815331.0995202-UTR-P-lacustris_contig106:234863..235084 | 1622815331.0995202-UTR-P-lacustris_contig106:234863..235084 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 234864..235084 - |
| 1693493481.2081604-UTR-P-lacustris_contig106:234863..235084 | 1693493481.2081604-UTR-P-lacustris_contig106:234863..235084 | Pleurocladia lacustris SAG_25_93 | UTR | P-lacustris_contig106 234864..235084 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815331.0074685-CDS-P-lacustris_contig106:222006..222160 | 1622815331.0074685-CDS-P-lacustris_contig106:222006..222160 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 222007..222160 - |
| 1693493481.105179-CDS-P-lacustris_contig106:222006..222160 | 1693493481.105179-CDS-P-lacustris_contig106:222006..222160 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 222007..222160 - |
| 1622815331.0191627-CDS-P-lacustris_contig106:222477..222608 | 1622815331.0191627-CDS-P-lacustris_contig106:222477..222608 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 222478..222608 - |
| 1693493481.1153345-CDS-P-lacustris_contig106:222477..222608 | 1693493481.1153345-CDS-P-lacustris_contig106:222477..222608 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 222478..222608 - |
| 1622815331.0324523-CDS-P-lacustris_contig106:223354..223420 | 1622815331.0324523-CDS-P-lacustris_contig106:223354..223420 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 223355..223420 - |
| 1693493481.127458-CDS-P-lacustris_contig106:223354..223420 | 1693493481.127458-CDS-P-lacustris_contig106:223354..223420 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 223355..223420 - |
| 1622815331.0427482-CDS-P-lacustris_contig106:223911..224021 | 1622815331.0427482-CDS-P-lacustris_contig106:223911..224021 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 223912..224021 - |
| 1693493481.137617-CDS-P-lacustris_contig106:223911..224021 | 1693493481.137617-CDS-P-lacustris_contig106:223911..224021 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 223912..224021 - |
| 1622815331.05292-CDS-P-lacustris_contig106:224746..224843 | 1622815331.05292-CDS-P-lacustris_contig106:224746..224843 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 224747..224843 - |
| 1693493481.1468709-CDS-P-lacustris_contig106:224746..224843 | 1693493481.1468709-CDS-P-lacustris_contig106:224746..224843 | Pleurocladia lacustris SAG_25_93 | CDS | P-lacustris_contig106 224747..224843 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig106.551.1 >prot_P-lacustris_contig106.551.1 ID=prot_P-lacustris_contig106.551.1|Name=mRNA_P-lacustris_contig106.551.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=186bp
MGLRHVRIRDPPAVSRFWRWHGEGEGHICTAEATYLVLKDFEEATGLATE GGRLEDILFLFALVGSRIKAAYESDPSKLGMGFPSSEEAKLRHRVRRVRL DRLVKAKYRGLEAVRESNGDEAAIEEFFRRRRGESIYDAASMNVASWKEK PVEVCNEEEAVGVDDRTREQSNAKRNSGGGKDSIA* back to topmRNA from alignment at P-lacustris_contig106:221479..235084- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-lacustris_contig106.551.1 ID=mRNA_P-lacustris_contig106.551.1|Name=mRNA_P-lacustris_contig106.551.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=13606bp|location=Sequence derived from alignment at P-lacustris_contig106:221479..235084- (Pleurocladia lacustris SAG_25_93) CACCAGCCTCTCGCTCTCTATGAGCAACCATGAACGAGTATCGTGCATCA
TCATGCATGGACGAGTATCTCGATAAGCCTCCCGACATCAAGTTATGGCC
AGAAACCAGACAGGAGTGTCACAGTTGTGGAAAGAGGGGGCGGCTCTACT
GCTCTGATTGCCTCGTTTTCGTGGGCACGCCTAGTGTGGTGCAGACTCCA
ACAGTGCGGCTACCGGTGCAGGTGGGCTATGCTATGTATCAATTTCTCAG
ATGTGTGCTTGATTTCACAGCTCCACAGCAGTACAGCTCATCCCCACGAC
TAACACTTTAGCGATCGTTTCTGGAGGTGCGAGGACACTGACAGGCGACA
GGCGACAGGTTCGTGTTGTTGCATTAGACTGCATTGGGTGTGGATGAATT
ACGCTCTCTTTATCTCGATGGCGAGAGGAAAGTGGAACGAGGTGGTTTTG
GCTACCGAAAAACTGCACAGGTAGCAGGTACTTGTAGGCGGTGGTGAGTG
GTGAGATCGAAAGAAGGTTCCAGGAATCGGTACGGAACAGGGCACATTTG
CAAAGCATATGATTTGCACGCTCCGAAGTACTTCGAACCATGTTGTATAT
GCATACATCAGGGGTGGTCACCCTTCCCCAGTGGTATAGTGGTTACTGGT
TACCTCGTTGAACCTACTTGTCTGGAGTTCAATTTCCTCTGCGGGGGGTT
TTCTTCCAACTTTGCTGTGGAAAGTGTTGAGAGGCACGAGTCCACTGCAC
TACCAGTCAGCGCTGACTGGTAGCCCAGTGGGCATCGTGCTTTTCAACAA
AAGCTAAAATCCGGGGTTGTTTGATGCGGGTGAGCCCGTCAGAGGTCGAT
CGGAGAAAGGTTGAGTCAAGACCTTGACATAATTAGAGACTCAACAACAA
AGCACCTGATCCACGAGGGGTCCCATCATATCACACCAGGGTCCCCCAAC
ACATGCAGATCTGTGTCCGACACCGTATATACCAAACAGCCCCCTATTCG
GTACTCAGACACATCTACGGTAAAAAACCTTTCATCACCAGGGTAAAACG
GTAAATCATAACCTCGAGTCTCAAGCTCCTTTTCCTCCAATACAATATCA
AGAAACAATAACCCTCTCGAGAAATATTCTCAACGAAAACTACCGTAGGT
GACATAAGATAGCACACCCGTGTGATAATATTTTGGAGCTCATAAAACTT
ATCACACGGTGTGCTATTCTGTAAGGGGTGTGTTATCTTCTGTCACCGAT
ATAGTTCATATTACGGAGCCCGCAATCAGGGTGTGTAATAAAGCAAGGGG
GTGTGATAAAACAAGTTGCTCCTGTGCTGCCACTCCTCGAAAAGGGTGTG
ATAGAACATGGGCGTGTAATAAAAAAGGGAGCGATATCTCTCTCGCCAAC
AAATTGCTGCCGGCCTGAGAGGTGTGGTAGTAGTCTATCTGTCGCCAACG
AATCGTTGCCAGTAGCCTCCTTCACCTCCGTGTGGTTTGTGTTTGAACAT
GCACCAGCTATGCACAAGTGGATTGGTGTGCGTGGGTGATAAAAATACTA
CTGTGTACCGCACGGTGTGATGACAGGGGCTCCGTGATTACTATGCGGCG
TAACTTGAGGGGTGTGCTATCTTATGTCACCGGTGTGATAACTGACCGTT
TTTTTGGGCCCAAAAAACTTATCACACGGTGCGCTATTCTGTACAGGGGT
GTGCTATTTTATGTTGCTATCTTATGTCACCAACGGTGAACCACGCCATT
CATCACACAACATCTCCACCGAAACAAAGTCACCGGAAATATCACATTTA
TTCTCCACCATCTTCATATCCGAAAACAAAAGTCTGTCATAGGTTATCTG
CGAACGCATCCAATTCGCTTGTTCTCCATATATTCTCAAGAATAGCCAAA
ACATAAGAAACATCTTCAGGCAATGCTTTCACAGAATCAACAATCCATCA
CAACGATCTTCTCCACTCGAATAAAATCCTCAAATAAAAACCATATTTCA
ACTTATTGACCAGTACAAATAAGCATTCGGAAAGCACACAAGCCTCAACC
ATTACTCATCAATATATGCCATTTTCTGTCCTCCAATACTGTATACCTTA
CAAAAAGCATAGCCAGCAAAGAAATGAAGTATTAACCTCCACCCATAATA
CTGAAGCTTTCAATCCTCCTCAACCAATTATGCAGCATAGACCAACAATT
ATGCAGCATAAACCGCTAGCCAACAGCCCCTCTACCGTGGCATCTTTCCC
GAATATAACATTAACATGCATTCGTTCCCGCTGCAAGAATCAACCATCGA
GCAACCCTAGACACGCAAAGCGGAAACCATATAGAACTTCCCATGTCGCT
GCTGCATCTGCGGATAGAATCATGGTACACAACTCCCCCCCTTCAGGATT
TTAGGCAGTACAGCAGTCATTATAGCATTGTACGGCCCTCCCGCCGAAAC
AAACCAAACAAATGACAATACAACAGGGAAACGAAGTGGCTTGCGTGAAA
AATAATGAATAAATAAATAAATAACCATAACAAACGCAAGCGTTGACCCC
CCTACTGGTGCAATGGAAAAATCAACGGATACTCATCACATACTCACGGT
GAGCACAAAAAAAAACTTATTGCGAAGCGGTTTCGTGAGGAAATCCGCAC
GCTACCGTGAATTCCCCCCCGAAATACCCCCATGACAAAGTACATCATAC
AAGCAAAATAAAAATAACGTATCACGCCCCAAGTGCACGGCCCTGGTGTG
CCCGTGTACTGGGGAAGCAATGGAATTGTCGGGCATGTTCATGCCAGAGG
GAGGGGAAGATGATATCGGTGTCGGAATCAATCAACGTTGCATGCTCGAC
GAAAATCTCGCAATTACCGCTATCCCCCCCTAACTCCGTACATCCAGCCC
ACACGATTTGCACGGCTGATGATGCAGGTCAAGTACTTCCATACTAGTGT
AAAGTTTCTCAACACCGTGTACAGCGATACAGTGATCAGGAAACAAAGAG
TTGCAAAAGTCTCTGTTGTACCGTCACGACTATATGCTAATCTGTAGCAA
AAGATTATGTTTGTACCGTCACGACTACTCCGTATATGCTAATCTGTAGC
AAAAGATGATCAGTCCTCCGAAACAAATCACACACATCGAGAAGATTCAA
CAATAGCACAGGGCCAAAGTTAGCATCAAAGTATTTGACGTGCATCAAAA
CCATAAGAAGCCGACACGGTTGTCCAAACAAAATCAAAAACCAAACCGAA
GAAATATATTGAAAAAATATCGAAAAACAAAAAGAGCAAAAACCAACGAT
TGTGAACGCGGGCACGGCAATTTCATCACTGTACCGGGGAAAACCTTCGT
CATTCCGGCGTCCCATCAGGACGATTCATTCTCAGCCGCCGGTCGTGTAC
AACTTTCCCCGATACACCGCCCCGTCTCCACCGTTGCCGCTTTGGATGCA
GCTGGTGACCCCCCCTCCCCGTTGTCGCTGCTACCGTCATATCCATGGGA
GACCTCGTAACCTCCACCGTCGTCCCATCGGCCGTCGCCGTCGCCACCCT
CGTGTCTGCCGTCGTTCCCACAGCCATCCCCGCAGATGGCCATAGCCACT
GCTCCATACTCCCACGATTCACCTCGTTTAACCGCCAGCACCAACCATCC
CAGCCGACGCGGCACGACAAAAACAAAACCATGCCGCACTCCGCTGCCAC
CTGTCCCCGGCGAACTGCTGACACTCCGGGCCCCCTCAAAATGACCTCCG
GGCCCCATCAGCCCTGCAGGCTCCCCGCCGCCAATGCGGCAACGGCAAAC
AATAGCACCGGCCACCGCCGCCGCAGTTGATGTCGCGTCACGATGCCGTT
CCCTCATCTCCCGTTTCTTCCCAGTCGTCCAAGTCCTTGCTCCGGCTATA
AAGAAGAACAAACGCGAAAGCACCCGCCTTCCTCGGTCGAAAGGAACCTC
CACGCCGCGGATTACACTCCAAGCGCGTCGCGGTGACCACTAACCCCGAT
CGAAGGGCTGCTGGGATACAATCCAGGTGACAGCGCGGTTGTTTCCTGCA
CTGCCGTCGTTGTCACCTGCTGGTGTAGTCACCACTGCTACTGCTGCTGC
GGGCGTCATGACTGCTGCCTTCGAGGCAGCTGCTGCTGTTGTGGCTGCTG
TCGCTGCTACCGCAGCTGGTGGTGCGCACCTCCTGCACCAGCACGATGCC
AGGGTCAAAAGGGTGGGTGGACACGCCCATTTCTCCACCACTACCGCAAA
CATCGGAAGTCCCGCGGGTCGCCGCTGCGTCTGCCCCCCCTACCAACACA
GCGGGGGCAACAACATCGCCATGCGCCGTCGCCATCATGGAAGCGGTTGC
TGTACCGCCCCCAACCGATGCATCGAGGAGGAAAGTGCTTCTAGTCGCCG
CAGTCACCACCGGTGTCTCTGCATCTGATGCGGTGGACGGTCCGCTTACC
CCCAATCGACGCATCCAGGGGCACAGCACTGTTGAGGGCCTCAGGGGCTA
CCGTTTCAGCCGCAACCGTCGATGTCGCCGCTGTATCGGCCACCGGCACC
ACAGTCTCCGCCGCATCCGTAGAGGCCACACACACCCCACGGGAAGACGT
CGACACAGCTGGCACAACATCCGCTGAGGGAACACCCCCGCCGCGGGAAG
ATGCCGACACGGCGGGCACAACACCCGCTGAGGGAACGCCCCCCACGTGA
AAATGCCGACTGCGCCGCACTCTCAGCTGCCGTCAAGTCACCCCCGACAC
AGCCGCGGGTTTCGCCGCTACCTGGGTCAGCACTCCGGGCGACAGCCCTG
CCGACGTAACAGGGAAGACACTACTCCTCTGTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGTCGCAGACCCAGAACCCACCGTTGCCACACGCTCGGT
CTCCACGCTTTTCGCATGAAACCTCTGATGAAAGATTTCTATTTCGAAGC
GAGAGCAAAACTTTTCGGCGTTGAGCGTTGCAAATGCACTCGTCGTCTGC
CAACGGCCCAAACTGTCTTGGGCCCACACACCTTCCCAGTCGTATGCCCA
TAAGTCGCGCTGACAAAGATGAACTATTAGGTCGATGAGTTGGGAGCGAT
CTGTGTGCGTCCTGTTCCGTTATTGACCAGCGTCGCTCCAGATGGAAAGC
CTGCTGCGCGCGGTCAGTTCCGCCGCACCGTGGACCGGCGACGTAACCAA
AGGTCCACGCCCGACCGCTTGCACAACTCATCCGACCTGTGCCAAAAGCA
GCCATCGAACTAGCTGCGTCACCTGGACCAGCGCCACCGAGGTCTGCACC
GCCAAAGCGAGCGCGCTCACCAGCCAACACTGCCCGTGGTGTTGCTTCAG
CCGCCTCGTTCCGTGTCTTCGCTTCATCCTGCAATCGGCAATGCTTCCTC
CAATCGAGCGCGCAGGTTCTTTGCCCCCACCTCTGAAAACATGAACTTTG
TAACCAAATGCTGTCCCTAGGCCTTATACCACGGCCGCAGCTGATGACAC
ACACGCCCGTCTGGTCCTCGCCTTATACCGCGATCCCCAGCTCGATAACA
CACCCTTGCCAGCTTTGTCCCTCTGCCCGTACTTGATAACCCACACCGCT
GTCCCTGAGTTGTGCCGCAGTCCCATCTTGAAACGAATACTGCTGTCCCT
GCCAGTCTAACGATATATAAAAAATGATCGATATGTCGTAGGACCGGTCG
CGAGGGTTAGTGGGTATTGATGTCTGGAGGGCTGGGACTGCGGTATAAGG
CAGAGACATCGGTATTCGTTTCAAGATGGGACTGCGGCACAACTCAGGGA
CAGCGGTGTGGGTTATCAAGTACGGGCAGAGGGACAGAGCTGGCAAGGGT
GTGTTATCGAGCTGGGGATCGCGGTATCAGGCAAGGACCAGACGGACGTG
TGTGTTATCAGCTGAAGCCGTGGTATAAGGAGGGGACAGCATCAACCTCT
GACGGGCTGACCCGCACCAAACACGATATATCGATATATCGTGTTTGGTG
CCGGTCAGCCCGTCAGAGATCGTCGGAGAAAGGTTGAGTCAAGACCTTAA
TTATTAGAGACTAAACACCAGAGCACCTGCTCCACGAGGGGTCCCGTCAT
ATCACACCAGGGTCCCCCAACACATGTAGATCTGTGTCCGACACCGGACA
TACCAAACAGGGGTTCGAATCTCACCTCCGACATGATTTTGCCTATGGAA
ATTGGCATGCCGATGGTATCTCTTGTACGTGGAATCCGGCAAGACAGCGC
TGATTACAGGGTTGGCAACCCTGGGGGTGAAATCCAAGTTCGTGGCTGAA
CAGCTAGACGGACTCCGGCATTAGCTTTTGTTGAGAAGCAGGATGCCCAC
AGAACTACCAGTCAGCGCTGACTGGTAGTCCAGTGGGCATCCGCTTCTCA
ACAGAAAGCGACTAATTGGTCAGTAGATATCTATATGGCTGGGTGCTAAC
CCTACAATCACCGAAAGGTGTACAAAAGGCATAGCGTTCAGAATAGATGG
GATGAAAATAACATACACATCTACAAGCTCCGGACCGGGGGCTATCGCCC
CCCCGTCCTCCGTCGAGGTGCAGCATCGACGTGGATGTTTAAAACGGCGT
ACCAAGTGGGACGGGTTGCAGCCGTTGTCGTTTTCAAAAGCAAAAGCACA
CGTGATGGGCCGTGTCATGTATGATGACGGAACCTTTTCTTTCGTGGAAA
GCCCTTAGAAACGTTAGGTCCGTGGGATGATTTATTGAACGGTACATGTA
GGACAGGCAGGGAAACCTTGCCACTTAACAGGAAGAATCATAGGGCAATA
ACATCATTTTCTCTTCACCTAGCACCCCGAAGGAGGAGACAATTCTTTTC
TTTTTGCGCCCCGCCCCCTTTTTGCGGTCTATTTTGCGCCCCCTTTTTTT
TTATTTGCGGTCTATTTTGCGGGCTATGCTTTGGTCGGCACCCACGTGCG
ATCCTGAGCTTCGAATAGGAAAGGAGCCACAGGACGTGGCCGCTCCGCGC
GTGCGTGCACGTATGTGGATGTTCTTCTTTTGTGGTCGCAACCTTTTCTG
GACGGTAAAATCCTCCCCTTGTTTTCTCGGACAGTAGCCTGCTGTGACGC
CTAATAGACAGGCAGGGCGAGCATCGAGGCGAACCTTTTCGGAGAAGCCA
ATCATGGTGCCGATCCTTGACAGTCCCGAACCTTTTTTTCTCGCGCCCCG
AAAACAGCTTGAGCTGAGAGTTGGCTCGTGGGAGAGAACCCGCGAGGTTC
TGCGCTCTCAGCGAGCGTTGAGCGCTTGCGTCTACTTACCTCTAGATATT
GGAGATTAGGAAAAACTCATTCTTGCCGTAGGCTGTTGCTTTTGTACCTC
CAGTGTTGTTCCTTCGGCAGAAAAAGGTGGGAGCCAGAAAAAAAAAAAAG
GCTCTAAAGAAAAAGAGAGGAAGGCTCGCCGGTGGTGCGTGCGGCGGGTG
GGGTGTCGCGGCTCGAAGCGCTGTTGGTTTGACCTCGCTCTCTCTCCCTC
CTCTCTGCTTGCCGCCGGCCTTGGGTTGCGCCTGTGGGTAATACAAAAAG
CAGCCACGGAAATGCTGCTGCTGTGTGCAGCAAGCCAACTAGATAGACTG
AAAGCTGTGCGGTTGACTGGTGTGTGTGAGGACGCTGCCCGCTCAGCACT
CTCTGTGTGTTTGGTCTCTCTCTGTCTCTCCCTCTCCCTCTCCCTCTCCC
TCTCCATATAAGGAGGCAGAGGAAGAGGATGGAGAGAAGACAATGATAGT
GAGAGGCGATTCTTTGGAGGAGGAGAGACAAAAATAGGTGACGAGGGCGG
AGATCGTGGAGTACAAGAGACGAAGCCGTTTGATCCTCCAGATCTACCGC
AGCCGCAGCAACGCTAGTAGTAGAGATAGGCCCAAGCAAACAAGAACGCT
AGCGGAGACCAACGCACTCTGTACTGGAAGGAACTACGCAGCAACGAGCA
GAGTGTGGTGACCAGGAGCAGGACGGAGAACTGACAGCTACAGGGAATTG
ATCCTAGCACGTCATCTCGAGGAGTAGGAGTAGGAACAGGAGGAATGCTT
GGTACAATAAGTGGTGCTGTGTTGTCTTTGAATCCGGAGGCTGGATCGTC
CCCGCTAGTCTCTTCCGCGTCCTCCACGTCAGGGAAGGCCGCGGTTTAGA
ATGTTCTAGCGCTCTTCTATTCCGCCAAGGCTGACGCCTTCTCATTGGTC
AGCCGGTTAGCGCAGTTGATGCTGGTTTATGAGGTAAATGGCAGCTCGCC
AACCGCCTTCCGCTGCGGCTGCTTCACTAGTGGCCACAAGTAGACGTGCA
GGGGAGAGAGAACAGTCAGAGTTACTGACTCATCGCTCGTTCCTGCCGGA
CTACTCTACCATGCGAATGGCTGTGGCGATGACTATTTAGCACTGCAGTC
AGCCAGCAGTGTGTGCATCTTTCTATAGTTTGCGCCGTGCTACATTCAGC
TCAATGTAGGCTACAGATTCCTCGCCATCGTTACGTAACCTGGCTTTAGG
GGCGTTTGATACTTGAAACCCTACCCGTAACGTTTACATGCCTACAGAGA
GTCGAACTCCGTGATCGGCTACATGCACAGTAGTGTCAAGCGATGGTAGG
TTGAAGAGGTTTGGAGATACGAGGCGGAAAAGCTATTGCTGCCATTATGG
ATAATAGTATAATAGGGTTGAGCCTCACCTACCCCACGCATTACGACAGG
GCACACCTTGGCCTTCAACGACGGAATGCTAATGCTTACTTGACAGCAAC
AGCCGCCTTGCTTGTTGACAAAGATGAGGCTACTCCGTTCCACTGGTAAG
CCACCGCTTCCCCCGCGTGGCGTGCACTGCTCGCAACCTCGGACCTTTAC
TCTGGTGTTCATCGCGGCAACGTTTCGTCTTTGTTTTTGTGGTGGATTCT
CCTCGCGCCCGTTGCCAATCCCTCGCCTCGGTTCCACCTTCGCGTGCGAC
GAAACCTCGGCGGTCGCCCCGGCGCTCATGAGGTGGACATCGTCGTAACA
GCTGAGGAGCGGAGACGATCTTCCGGCGTGCATGTCGCGGTCGTGGCGCC
GCAGGTGAAAAATAAGGGTGATGGTTAACAACGATTCGGCGGTTGCTTTT
GTCGCTACAAGTATCGCTGCTGGATGTAAACGATCGCCCAACGTGGGAAA
CGCGGTACAAAACGAATCGACATGACCGGGGTGTTCTTTCGTACAGGAAG
ACCTCGATCACGATCAACACGCAACTGCTGTTTGTCCTGGGCTTTATGTG
TATGGAAGGGGAAGACTATTTTTTTTTTTGGGGGCTGACCGGGGACGCGC
GCAAGTACACATATACAAGTAAAAAACTTCCATTATTCGTTCGAGAGCCC
AACATTTTTTTACGTCCTTTCCTCTTGGATGAAGTTTAAAAGGTTCACGG
CAAATCGGCTGTGAACTCACCGAAGCTAGCGATAGCATGAGCTGAATTGC
CTGCGTATCTGTGGACGCTTTGTACACCTACATCGGAACTCCTCAAGCCG
TGGCAACTCGTCGAAGGCTATGTCTGTCTTAACTTGACAGCAGTTTAGCC
ATTTGTTGCGCGTACATGTTGCATCCAGTCGGTTCGGGTCGTTCCCTTCG
AGGGGCTGAGAATGGTGGTGGTCTATCGAGCTGCAGCTACCAGCCGGAGT
GCGACTTTGTAGTGTTCCCGAGTAACACATCGGTCTGCTGGTCCGAGCTG
TCGGAGGAGGAGCTCGCGAGAGTACGCCGGATCATCCTCATCGACAGCAG
GCAAGTAAATCGAAAAAAGTTGAAAGAGGTCGAATGGCTGCCAAGGGGCA
AGTTATCTGCGTCTCTCTTCCAACAGGCGACAAGCAAGAGGGGAAGCCAT
CGCGATGATGCCTGCGGTCATCACAGACTATCTTTGGTGTAGGGCATTTG
CGTTTTTTGTGCTTGGAAGACGGGTCCTCGCTGAAATCGCTTGGACTGAT
CCCTCTTGCCTTGGTGGCTTTCTATTCCCAAGTGGCTAGTCTCCCTCCCC
AAGCAATGGGCAAGAGGTGAATCGATCAAATCCAGCTCCCTCCTGAAGCA
GTGTCGCAACAAACCTGCCCGCAAGCAAGCAAATACTGTTGCTATCGAAC
ACGGCAGTCAGTTGTGCTTTTTTCCCAAGGTCGGTTTCTCGGTGGGCGTC
GACCTTAGGGATCGTTGTTTCTTCACTAGGTCCGTTACTTGACGTTTGCA
GATGGGTCAACACCGGGGCCGTGGTCCGCCACCCCAAGCTCATGGGACTG
CGGCACGTTCGCATCCGCGATCCCCCGGCCGTCAGCCGCTTCTGGCGATG
GCACGGCGAAGGGGAGGGCCACATTTGCACTGCGGAAGGTAAGTGGGGCA
TGGTTTGCCACCCCGCACCTGAACCCGCTTTTTCTATCGTGGAGTAGCAG
TCCACGGGTTCCCACGGGTTTTGGGAGGGGAGGAAAGATGAGGACACACA
TGCGGCAGCCAGTCGCTCACCGCCCTTGGTGCCTTATTGTCCATGCTGCT
GAGGGAAATAATTGTAGTGCTTGGGATTTTGTTCAGCCGACTTTTGTACG
GATGGTTTCTGTTAGGAACCATTGCTGCCCTCCGGTGTTGCGGAAAGGAC
TGAAAGAACTGAACTATTTTTTGTCGGAGTGTGTGCGTTCTTGTCGACAT
GGCATAATGTGACATGGCGTGACATACCAATGACGTGACGTGACGTTAGG
GTGCTTCCAAGCCACCCCACCGATTGCTTGGCCAATCAAAGACCACCACC
GCCGACAGACACGACATGACGGAATCACGAATCACATCACAACGAGAAAC
AGTCGTGCACATCGATCGCTTTGCTGAGCCGAACCGGCTCAGGCCACCCC
ACCGCCCCGAACACTCAAGATCACAGCTTTGGCCATGAGTGTGCCTCGTG
TGATGCGAATCAGCGTACACTCTGCCCTGTACCGTTTCCCGACTACACGA
AGCGAATGGCCTGGGCTTGCTCCTCTCCTGCCTGCCTGGCTTGTTTGTGT
CGTGTTGATTGCGCTCGATAACGCCTCGCTTCGTTTTGCGCGGTTGGTTC
TGCTTTTGCACAGCGACATACCTTGTGCTGAAGGATTTCGAGGAGGCAAC
AGGGCTGGCGACGGAAGGCGGTCGTTTGGAGGACATTCTCTTCCTCTTCG
CCCTCGTCGGCTCGAGGATCAAGGTGTGGGTGTCGCCCACAGCGTGTTAC
CTGAATACAGCTACAAGTACGAGTGTTGCGTCCCGGCGTTTGTTTGTTTT
TTGCTGTTCCAAGATCAGCTCTGCAAGCTTACAACGGACTATCTATGGAG
TGCTCATCCCCCAAATGGTTTGGTGAAGGTTTAGAGGTTTGGTTGACTCT
TTCTTTTTTTCTTGTATTCTGGTATCTGTTACTGTAAAAGGGTGTGCGCT
GTAGTGCATGATCACGATCCCGGCGAGATCCCACCAAGATCGTTTGTGCG
ACTCGATTTTAGGCCACCTCAACCCCAACCCCAACCACGCCCCGAGCAGC
AATAGAAATAGAACTAGAAAAGGGTCACGTGAAAATACCAACATGCATGT
GTGGATGGTGTAGCATTCATGTCGGCGTGTGGCCGAAGTCTCTCTAAACT
CGGGACGTTGTCACCTTTCTTTCCTTCGTTGGCAATGTCTGCCTTCCGTC
TGGCAACTCTCCAGGCTGCATACGAGTCCGACCCTTCCAAGCTGGGTATG
GGCTTTCCCTCTTCGGAAGAGGCCAAACTGGTGAGGGATCATTTTCGCAA
GGCTTATTTTATGGCGGTACAGTAGCGTTGTTTTCGGCGGACACAGAAAG
GGGGGTATGGCCATATGGCGGTAATTTTTCGGCGGGTGGCTATTTCGCGT
ATTTTGGCGGGTACGCTTTTGGCGGTGGCGGTAAGACCGAAAAATGGCGG
TATTCCAGCGGTTTACCGTTATCGCTACCCCCCACCACGGCGGTAAAAAG
CAGCGGGAAAAAGGCCGCCATAACCCTTGAAGAATTTTAGTCACGTGCGA
GGTCGACGCTTTCGCCGAGAACCTTGCGTCGACATCCATCAGTCACAGCA
AGCCCCGCGAACGAATGCAGTCAATGTGGGTTGGCTAACTGTCCACTCTC
CTGATGTTCGCCGTGCCTCGTCTGGTATCGCAGTAGAAGTAGTCGCACAG
CAGGCAATCGCGAAACGCGTCGGTCGTCTCACCTCTGCTTGTTCAGGCGA
ATGCAAAAAAAATCGGCCGGCCCCTGACCGGACCTTGTTTTGTTTCCCCG
AAACAATGAATGGAAGGTCACAGCTTTGCTTGGATTTCACAGCTATATTA
TTGAAGTATCAGCGGTCAGCTCATCTCTGACCATCTAGACGTGTGCTTCA
GCGTGCAAAGTTTCTGCCGAATACACCTCCCAACCCTGGAGGTGCACCAT
CTCTGTCGTGGGATGCTCGAGTTTGTCTCTGCACGATGATGAGTCCTCCA
CCCGCCCCTCCCCTGCGACATTCCAGCGTCACCGAGTTCGACGTGTTCGT
CTAGATCGTCTGGTGAAGGCCAAGTACAGGGGGCTCGAGGCCGTCAGGGA
GAGCAACGGGGATGAGGCTGCCATCGAGGAGTTCTTCCGAAGGCGTCGTG
GGGAAAGGTAGCTGCGGTGTAGGGCGTCCGCTGTACGCAGCAAAGACAGC
GTCAGCAACAGGACGGGTTCCGCGATAAGGCTTGACACGATCCCAGACCG
ACAGACCTGCCGTGCGTGAGCAACCATGGACTCTCCCGCCCTGCTTGGTA
GAGCATGATAGTTTATGTGTTCTCGCACGTTTTTCAGGTTAGAGTTCTCA
TCCTACTCACACGGTGATGGTGGGCCGTTTGGTCGTATGCCAGGGCAAAA
CTTGAATAAGGAACCTTTCAAACATCTTACCCCCGCGCCCCCACGTCATG
TTGTGTATTTTCTGTCCTATCCAGTATCTACGATGCCGCGTCCATGAACG
TTGCATCCTGGAAGGAGAAGCCCGTTGAGGTCTGCAATGAAGAAGAGGCG
GTTGGCGTGGACGACAGGACACGAGAGCAGTCGAATGCGAAAAGGAATAG
TGGTGGCGGCAAGGATAGCATCGCGTAGCGAGGGTCTTTCGGCCGCTCGA
CCTGTTGTCGTGTCAACAAAGCAGCGTTTTCGGGTGAAATTCCCCCGACC
CCCGAGGCCAATAATGCCTGTTTTCGTGAAGAAAGGGGCGGCGACAAAAG
ATCGACACCCAAAACAAGCAGGTTGAAAGACAGAGAATGTCCGACTCGAA
GATGAGAGTTATGCATACAATTACCACGCCAAGAACACTGACGAATCACT
GTAATAACTGTTCCCGTGATGTTTCCCGCCTGTCCGCATGGTTGACACTT
CGTGGATATTTTTATTTCCTCGAAAGGCGTGGAGTTCTGGAGCCTCCTGG
GTTTCAGTGCCTGTCGCGAGTAAAAAACGATTACTGTACCTTGATCCTTC
ATGAGCATTTCGGCTCTTTTTTCGTCCCAGATCTGGGAAGTACCCGAGAA
AATTGTCGTATATCTTGGATTGTTTGTAACCGCCGTTAGCGGGACGAAAA
ACTAGGGCTGGCTGTGAATCGATTGGATTTGTTTATATTGTAAGCATCAG
CATTGG back to topCoding sequence (CDS) from alignment at P-lacustris_contig106:221479..235084- >mRNA_P-lacustris_contig106.551.1 ID=mRNA_P-lacustris_contig106.551.1|Name=mRNA_P-lacustris_contig106.551.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1116bp|location=Sequence derived from alignment at P-lacustris_contig106:221479..235084- (Pleurocladia lacustris SAG_25_93) ATGGGACTGCGGCACGTTCGCATCCGCGATCCCCCGGCCGTCAGCCGCTT CTGGCGATGGCACGGCGAAGGGGAGGGCCACATTTGCACTGCGGAAGATG GGACTGCGGCACGTTCGCATCCGCGATCCCCCGGCCGTCAGCCGCTTCTG GCGATGGCACGGCGAAGGGGAGGGCCACATTTGCACTGCGGAAGCGACAT ACCTTGTGCTGAAGGATTTCGAGGAGGCAACAGGGCTGGCGACGGAAGGC GGTCGTTTGGAGGACATTCTCTTCCTCTTCGCCCTCGTCGGCTCGAGGAT CAAGCGACATACCTTGTGCTGAAGGATTTCGAGGAGGCAACAGGGCTGGC GACGGAAGGCGGTCGTTTGGAGGACATTCTCTTCCTCTTCGCCCTCGTCG GCTCGAGGATCAAGGCTGCATACGAGTCCGACCCTTCCAAGCTGGGTATG GGCTTTCCCTCTTCGGAAGAGGCCAAACTGGCTGCATACGAGTCCGACCC TTCCAAGCTGGGTATGGGCTTTCCCTCTTCGGAAGAGGCCAAACTGCGTC ACCGAGTTCGACGTGTTCGTCTAGATCGTCTGGTGAAGGCCAAGTACAGG GGGCTCGAGGCCGTCAGGGAGAGCAACGGGGATGAGGCTGCCATCGAGGA GTTCTTCCGAAGGCGTCGTGGGGAAAGCGTCACCGAGTTCGACGTGTTCG TCTAGATCGTCTGGTGAAGGCCAAGTACAGGGGGCTCGAGGCCGTCAGGG AGAGCAACGGGGATGAGGCTGCCATCGAGGAGTTCTTCCGAAGGCGTCGT GGGGAAAGTATCTACGATGCCGCGTCCATGAACGTTGCATCCTGGAAGGA GAAGCCCGTTGAGGTCTGCAATGAAGAAGAGGCGGTTGGCGTGGACGACA GGACACGAGAGCAGTCGAATGCGAAAAGGAATAGTGGTGGCGGCAAGGAT AGCATCGCGTAGTATCTACGATGCCGCGTCCATGAACGTTGCATCCTGGA AGGAGAAGCCCGTTGAGGTCTGCAATGAAGAAGAGGCGGTTGGCGTGGAC GACAGGACACGAGAGCAGTCGAATGCGAAAAGGAATAGTGGTGGCGGCAA GGATAGCATCGCGTAG back to top
|